Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00006 ATGGATTTGACGGGAGAAAGGTCTGAACCTCACGTCGCCCAACAAAGGCGCCGGGAAAGGCTAAGAGTTCAGCAAATTAGTTCAACTCAATCTATTCCGACTGATGATAACCAATTCTTTTTTCATTCAGAATTAAGGCCAGATCTTGGTGAAGTTGGCAATGCAAGTTCTCTTTTTGACCCATCTTTCCTCCCCTCGGAACTGATGGGGTTTTCGTCGGATTTTAACGCTCTACCTTCCCAAAGTGACTCAATCGGACGTCAGCAAATGTCAGAGAATACCCTCTTTCGTTCTCAGTGGATCTCATCTGATTTCAATTTATCATCTAAAGTTCAACATCAAGCTGGAGATTGGATGTTGACTTATGGAAGTAGTTCATGGTCTGCGGAAAATAATCCCAATCTAATGATTTCCGGCGAAATAGGTAATGCTTCTGTCCGTCAGCCATACTTGAACCCAAGTTACAGCAATGACTATAATTTTTCCGGTGATCACCTTCCTGAACCAGATCGCCGGAAGCATGCAGGAGAAACTCAGTTCAGTTCTCCACCTTTCCAAAACACCCTACAAGATGTAGTCATTCCGGCGTCTATACGAACTCCGGTATTAGAAAACGGACAGGGGAGGTGGTCCAGTGCAAGTGAGTTTGCCAGTTTTCCATCGTTTAAATATCAAGAAGATTTATTACGCTTTGGAAATTCTAGTTATTGGGTCGACAGATCAGTTCAAAATAGCTTTCAACAAGGTCTTTCTCTATCACTGTCATCAAATCCACCTTCCAAATCGTTGGTTTCTCAGCTTGAAGACGGCTGTGCGTTCGAAGATTTGGAGCAAAGCAGTAGTAAAACAGCCGGAATATCTGGCAATTTCAGTTCAACATCAAAACCGCCCACCATTAGTAAACGCTGTGGAAAGTCTATTCAAGAAACATTTGGCGTTTCTCCAAACGCTTACGGAAACACTGGTCCTCTCGGTCCTTTCACCGGCTATTCAATCATTTTGAAGCGTTCAAAATTTCTGAAGCCTGCCCAGCAATTATTAGAGCAAATTTGTGGTAAAAGTGGATTAAAGTTTGGAAGAACACGCGGCGTGTTGAATAGAACATCTGGAGAAGTCAGTGTCTCAGTTTCTGCCGATGTTTCCGATGCGACAGCAACTAAAGTTCCGTCCAAGGGTTATAACTTAACTTCTTCGTCGTCTATATTTTATGGTCCAGGCGAAACGACCGGTGTTAAAGCCGGGAGCTTTTTCTATGAACCAGTTCGTCCAGACATCCCACGAAAGAAAGCTAAGCTACTGTACATAATGGACGAGGTTGTATGCAGAAGATACAGACAGTATAATCAGCAGATGCAAATGGCTGTGTCGTCGTTTGAATCCGTTGCTGGGCTTGGGTCGGCAATGCCATTCATGTCGTTCGCGTTGAAGACAGTCTCTAGGCAATTTAGATGTCTGAAGAATGTAGTTTCCGAGCAGTTGAGGCATGTGGGGAGAGGGATGGCTGAAGAATTAACGTCACAAAAAGTTGAAGGCAGTAGTGGGCAGCAGTTCAGAGGCGGTGAAGAATGCGTGGAGGAGTATGGTTATGGCGATGGTTGGGATGGCTTCCGTTTGCTCCAACCCCATCAACATCTGTGGAAGCCCCAGAGAGGCCTGCCTGAAAGAGCTGTTGTCGTTCTTAGAGCTTGGCTTTTCGAACATTTTCTTCACCCGTACCCAACAGATGATGATAAGCATATGTTAGCCACTCAAACAGGCTTATCTCGAAACCAGAGTTTCGTATCAAACTGGTTTATAAATGCTCGAGTGAGAGTGTGGAAGCCGATGGTCGAAGAAATACACGTCCTAGAAACTGAAGAACCTCCGAGCGAAACAAATCAAATTCACTACCTGGGAAACAATTCAGAGAGTCAGCGAAACTCTGGAGGAATTGACGATCAGGGTCAGCCATTACAGTGCTTGGATGAAGACAACCCATGGTGGAGCAGCCACGAGAAGCGGTCGAGGGTGGAGAATGAAGAACCATATCCTGCGAGCTTCAATGAACCACCGACGGTAGGGTTCATGCCGTACGACGGCGGTGTGTCTTTAACGCTAGGGCTCCGGCATGAGGTGGAGAATTCTCAGCAACAGCTACCGTTACAACACCAGAATCAACTCGGAAGACAATGTGGAGGCCACTTTCTTGGTGATTTCGTCGGTTAA 2205 45.49 MDLTGERSEPHVAQQRRRERLRVQQISSTQSIPTDDNQFFFHSELRPDLGEVGNASSLFDPSFLPSELMGFSSDFNALPSQSDSIGRQQMSENTLFRSQWISSDFNLSSKVQHQAGDWMLTYGSSSWSAENNPNLMISGEIGNASVRQPYLNPSYSNDYNFSGDHLPEPDRRKHAGETQFSSPPFQNTLQDVVIPASIRTPVLENGQGRWSSASEFASFPSFKYQEDLLRFGNSSYWVDRSVQNSFQQGLSLSLSSNPPSKSLVSQLEDGCAFEDLEQSSSKTAGISGNFSSTSKPPTISKRCGKSIQETFGVSPNAYGNTGPLGPFTGYSIILKRSKFLKPAQQLLEQICGKSGLKFGRTRGVLNRTSGEVSVSVSADVSDATATKVPSKGYNLTSSSSIFYGPGETTGVKAGSFFYEPVRPDIPRKKAKLLYIMDEVVCRRYRQYNQQMQMAVSSFESVAGLGSAMPFMSFALKTVSRQFRCLKNVVSEQLRHVGRGMAEELTSQKVEGSSGQQFRGGEECVEEYGYGDGWDGFRLLQPHQHLWKPQRGLPERAVVVLRAWLFEHFLHPYPTDDDKHMLATQTGLSRNQSFVSNWFINARVRVWKPMVEEIHVLETEEPPSETNQIHYLGNNSESQRNSGGIDDQGQPLQCLDEDNPWWSSHEKRSRVENEEPYPASFNEPPTVGFMPYDGGVSLTLGLRHEVENSQQQLPLQHQNQLGRQCGGHFLGDFVG 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 52680 56192 - BLOR20176 Blo08g00006 63958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00006 734 MobiDBLite consensus disorder prediction 162 184 - -
Blo08g00006 734 CDD homeodomain 546 609 IPR001356 GO:0003677
Blo08g00006 734 SMART prehox3 328 491 IPR006563 -
Blo08g00006 734 Pfam Associated with HOX 333 489 IPR006563 -
Blo08g00006 734 MobiDBLite consensus disorder prediction 1 28 - -
Blo08g00006 734 MobiDBLite consensus disorder prediction 1 23 - -
Blo08g00006 734 Pfam Homeobox KN domain 563 604 IPR008422 GO:0003677|GO:0006355
Blo08g00006 734 SUPERFAMILY Homeodomain-like 550 614 IPR009057 -
Blo08g00006 734 SMART HOX_1 546 612 IPR001356 GO:0003677
Blo08g00006 734 MobiDBLite consensus disorder prediction 620 687 - -
Blo08g00006 734 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 77 706 - -
Blo08g00006 734 Gene3D - 549 613 - -
Blo08g00006 734 MobiDBLite consensus disorder prediction 659 673 - -
Blo08g00006 734 ProSiteProfiles 'Homeobox' domain profile. 565 608 IPR001356 GO:0003677
Blo08g00006 734 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 77 706 - -
Blo08g00006 734 MobiDBLite consensus disorder prediction 620 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01167 Blo-Chr7:31519826 Blo08g00006 Blo-Chr8:52680 1.21E-68 dispersed
Blo08g00006 Blo-Chr8:52680 Blo09g00247 Blo-Chr9:11077374 2.69E-70 dispersed
Blo14g00186 Blo-Chr14:1509403 Blo08g00006 Blo-Chr8:52680 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00006 - - jre:109019501 508.449