Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00019 ATGTCTTCTCGCCCTTCTGCTTTCGATGCATTAATGTCTGGTGCTCGTGCCGCAGCGAAGAAAAAACCCCAAGCTTCATCTCCCAAGAAGCGTAAAACCCTAGATTCTTCAATCCCTTCCCTAAAACCTAGTCCTACCAAAGCCCTTGATTTGCCGCCGGCTATTGAGCAACAGAGTGAAAGTCAAGTTCTGGTCAGTTGTAATGGTGCTAGCTTAGGGGTTTCAGCAGATACCCATAATTCGTTAGATGTCGACCAAGGTCTGGAGAATGGTAGCGATTGCGGAACCAAGAATGCACCGGTTGCAAAGAAAATGTGTGCGTCGAGTATTGAGGAGAGAATAGGTAAATTGAAGAGTAGTATCTCCGAATTGAAGAAAAAGGCAAAAGATTTTGATCCGAAATCGGTAGCTTGTTGGAAAAATGGAGAACGCGTACCCTTTCTGTTTCTATGTTTGACTTTCGATATGATATCTGGGGAGTCTAGTCGGATTATGATTACTGATATAGTGTGCAATATGTTGAGGACTGTAATGCACTCCACGCCTGATGATTTGGTTGCCATCGTTTACCTTTTGGCCAACAAAATAGCTCCCTCGCATGAAGGGTTGGAGCTTGGAATTGGTGATGCCTCGATTATCAAAGCACTCGCAGAAGCTTTTGGGAGGACCGAAGTTCAGGTTAAAAAGCAATACAAGGAATTGGGAGATTTAGGTCTTGTTGCAAAAGCAAGCCGCTCATCTCAATCAATGATGCGAAAGCCTGATGCATTAAATGTTGTCAAAGTTTTTGAAATGTTTAGGCTGATTGCTAAGGGAAATAGAAAATTAACTGGCATGCCTCAGGTTGAGTTTGTTTCTGTTTTCGGAAAAAAATCAACTCCTATAGAATCTGGAAAGGATAGTCAAGAGAAAAAGAAGAACCATATAAAGTCACTTCTTGTAGCTGCCACTGACTGTGAACCCCTATATTTGATTCGACTACTGCAGGCAAAGTTGCGAATCGGATTGGCTGAGCAGACTCTTCTTGCTGCATTGGGCCAAGCTGCTGTATATGCTGAAAAACATTCGAAACCACCACCGCACATTCAATCTCCTTTAGAAGAGGCTACCAAGATTGTTAAACAAGTCTACTCAGTACTTCCAGTTTATGATAAAATTATCCCTGAGCTTCTCAATGGCGGTGTGTGGAATCTTTCCAAGACGTGTAGCTTTACACCAGGCGTCCCTGTTGGACCTATGCTGGCAAAACCAACTAAAGGTGTATCTGAGATCTCAAATAAATTCCAGGATATGGAATTTACCTGTGAGTATAAGTATGATGGGGAACGTGCCCAGATACATTACATGGAAAATGATTTGGTTGAGATATATAGCAGAAATGCCGAACGAAACACTGGGAAGTTCCCTGATGTTGTCGCTGCAGTATCAAGGTTAAAGAAATCATCTGTTAAATCATTTATTTTGGATTGTGAAATAGTTGCTTATGACCGAGAAAAGAAGAAGATTCTACCTTTTCAGATCCTAAGTACCCGAGCTCGCAAAAACGTGGTTGTAAGCGACATCAAGGTTGATGTTTGCATATTTGCATTTGATTTATTGTATCTTAATGGCCAACCGCTTATTCAGGAAGAACTGAAAGTTCGCAGAGAGCACCTTTATAATTCGTTTTGGGAAGAAACTGGGTACTTTCAGTTTGCCACAGCAATAACAACAAATGACCTTGAGGAAATACAGAAGTTTCTTGACGCTGCTGTTGATGAAAGTTGTGAAGGGTTAATTATCAAAACGCTAGATAGAGATGCGACTTATGAGCCTTCCAGAAGGTCCCTTAACTGGTTAAAACTGAAGAAAGATTACATCGACAATATAGGGGACTCGCTTGATTTGGTACCAATAGCGGCTTTCCATGGCCGGGGGAAGCGCACAGGGGTTTATGGTGCATTTCTCCTCGCTTGCTACGACAATGATAATGAAGAATTTCAAAGCATTTGCAAAATAGGAACTGGGTTTTCTGAAGCAATGCTTGATGAACGGTCTGCTAGTCTACGTTCTAAAGTGATTGCTGAACCGAAGTCTTACTATCGATATGGGGACTCAATCAATCCTGATGTGTGGTTTGATCCTTCTGAGGTTTGGGAGGTTAAAGCTGCTGACTTGACAATCAGTCCAGTTCATCGTGCAGGAATTGGCATTGTGGATCCCAATAAGGGCATCTCTCTTCGATTTCCTCGGCTTGTTCGTGTACGGGAAGACAAGAATCCAGAGCAAGCCTCGTCATCTGAGCAAGTAGCTGAGATGTATAATGCTCAAAAACACAATCAACACAACAACCAAGAAGACAATGAAGATGATTGA 2355 42.17 MSSRPSAFDALMSGARAAAKKKPQASSPKKRKTLDSSIPSLKPSPTKALDLPPAIEQQSESQVLVSCNGASLGVSADTHNSLDVDQGLENGSDCGTKNAPVAKKMCASSIEERIGKLKSSISELKKKAKDFDPKSVACWKNGERVPFLFLCLTFDMISGESSRIMITDIVCNMLRTVMHSTPDDLVAIVYLLANKIAPSHEGLELGIGDASIIKALAEAFGRTEVQVKKQYKELGDLGLVAKASRSSQSMMRKPDALNVVKVFEMFRLIAKGNRKLTGMPQVEFVSVFGKKSTPIESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQAKLRIGLAEQTLLAALGQAAVYAEKHSKPPPHIQSPLEEATKIVKQVYSVLPVYDKIIPELLNGGVWNLSKTCSFTPGVPVGPMLAKPTKGVSEISNKFQDMEFTCEYKYDGERAQIHYMENDLVEIYSRNAERNTGKFPDVVAAVSRLKKSSVKSFILDCEIVAYDREKKKILPFQILSTRARKNVVVSDIKVDVCIFAFDLLYLNGQPLIQEELKVRREHLYNSFWEETGYFQFATAITTNDLEEIQKFLDAAVDESCEGLIIKTLDRDATYEPSRRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLDERSASLRSKVIAEPKSYYRYGDSINPDVWFDPSEVWEVKAADLTISPVHRAGIGIVDPNKGISLRFPRLVRVREDKNPEQASSSEQVAEMYNAQKHNQHNNQEDNEDD 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 186023 191838 - BLOR20189 Blo08g00019 63971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00019 784 ProSiteProfiles ATP-dependent DNA ligase family profile. 518 654 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Blo08g00019 784 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 404 622 - -
Blo08g00019 784 Gene3D DNA ligase/mRNA capping enzyme 441 566 - -
Blo08g00019 784 CDD OBF_DNA_ligase_I 624 769 - -
Blo08g00019 784 ProSitePatterns ATP-dependent DNA ligase signature 2. 590 616 IPR016059 GO:0003909
Blo08g00019 784 CDD Adenylation_DNA_ligase_I_Euk 401 619 - -
Blo08g00019 784 Coils Coil 107 127 - -
Blo08g00019 784 MobiDBLite consensus disorder prediction 1 50 - -
Blo08g00019 784 MobiDBLite consensus disorder prediction 757 774 - -
Blo08g00019 784 Pfam ATP dependent DNA ligase C terminal region 641 752 IPR012309 GO:0003910|GO:0006281|GO:0006310
Blo08g00019 784 Pfam DNA ligase N terminus 146 345 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Blo08g00019 784 PANTHER DNA LIGASE 1 62 273 - -
Blo08g00019 784 PANTHER DNA LIGASE 1 286 784 - -
Blo08g00019 784 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 204 767 IPR000977 GO:0003910|GO:0005524|GO:0071897
Blo08g00019 784 Gene3D - 121 414 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Blo08g00019 784 Pfam ATP dependent DNA ligase domain 412 616 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Blo08g00019 784 Gene3D - 422 620 - -
Blo08g00019 784 SUPERFAMILY Nucleic acid-binding proteins 624 770 IPR012340 -
Blo08g00019 784 MobiDBLite consensus disorder prediction 750 784 - -
Blo08g00019 784 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 436 444 IPR016059 GO:0003909
Blo08g00019 784 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 127 402 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Blo08g00019 784 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 62 273 - -
Blo08g00019 784 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 286 784 - -
Blo08g00019 784 Gene3D - 621 783 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00019 Blo-Chr8:186023 Blo17g00436 Blo-Chr17:5334955 2.99E-163 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00019 K10747 - csv:101213447 1180.24