Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00019 ATGTCTTCTCGCCCTTCTGCTTTCGATGCATTAATGTCTGGTGCTCGTGCCGCAGCGAAGAAAAAACCCCAAGCTTCATCTCCCAAGAAGCGTAAAACCCTAGATTCTTCAATCCCTTCCCTAAAACCTAGTCCTACCAAAGCCCTTGATTTGCCGCCGGCTATTGAGCAACAGAGTGAAAGTCAAGTTCTGGTCAGTTGTAATGGTGCTAGCTTAGGGGTTTCAGCAGATACCCATAATTCGTTAGATGTCGACCAAGGTCTGGAGAATGGTAGCGATTGCGGAACCAAGAATGCACCGGTTGCAAAGAAAATGTGTGCGTCGAGTATTGAGGAGAGAATAGGTAAATTGAAGAGTAGTATCTCCGAATTGAAGAAAAAGGCAAAAGATTTTGATCCGAAATCGGTAGCTTGTTGGAAAAATGGAGAACGCGTACCCTTTCTGTTTCTATGTTTGACTTTCGATATGATATCTGGGGAGTCTAGTCGGATTATGATTACTGATATAGTGTGCAATATGTTGAGGACTGTAATGCACTCCACGCCTGATGATTTGGTTGCCATCGTTTACCTTTTGGCCAACAAAATAGCTCCCTCGCATGAAGGGTTGGAGCTTGGAATTGGTGATGCCTCGATTATCAAAGCACTCGCAGAAGCTTTTGGGAGGACCGAAGTTCAGGTTAAAAAGCAATACAAGGAATTGGGAGATTTAGGTCTTGTTGCAAAAGCAAGCCGCTCATCTCAATCAATGATGCGAAAGCCTGATGCATTAAATGTTGTCAAAGTTTTTGAAATGTTTAGGCTGATTGCTAAGGGAAATAGAAAATTAACTGGCATGCCTCAGGTTGAGTTTGTTTCTGTTTTCGGAAAAAAATCAACTCCTATAGAATCTGGAAAGGATAGTCAAGAGAAAAAGAAGAACCATATAAAGTCACTTCTTGTAGCTGCCACTGACTGTGAACCCCTATATTTGATTCGACTACTGCAGGCAAAGTTGCGAATCGGATTGGCTGAGCAGACTCTTCTTGCTGCATTGGGCCAAGCTGCTGTATATGCTGAAAAACATTCGAAACCACCACCGCACATTCAATCTCCTTTAGAAGAGGCTACCAAGATTGTTAAACAAGTCTACTCAGTACTTCCAGTTTATGATAAAATTATCCCTGAGCTTCTCAATGGCGGTGTGTGGAATCTTTCCAAGACGTGTAGCTTTACACCAGGCGTCCCTGTTGGACCTATGCTGGCAAAACCAACTAAAGGTGTATCTGAGATCTCAAATAAATTCCAGGATATGGAATTTACCTGTGAGTATAAGTATGATGGGGAACGTGCCCAGATACATTACATGGAAAATGATTTGGTTGAGATATATAGCAGAAATGCCGAACGAAACACTGGGAAGTTCCCTGATGTTGTCGCTGCAGTATCAAGGTTAAAGAAATCATCTGTTAAATCATTTATTTTGGATTGTGAAATAGTTGCTTATGACCGAGAAAAGAAGAAGATTCTACCTTTTCAGATCCTAAGTACCCGAGCTCGCAAAAACGTGGTTGTAAGCGACATCAAGGTTGATGTTTGCATATTTGCATTTGATTTATTGTATCTTAATGGCCAACCGCTTATTCAGGAAGAACTGAAAGTTCGCAGAGAGCACCTTTATAATTCGTTTTGGGAAGAAACTGGGTACTTTCAGTTTGCCACAGCAATAACAACAAATGACCTTGAGGAAATACAGAAGTTTCTTGACGCTGCTGTTGATGAAAGTTGTGAAGGGTTAATTATCAAAACGCTAGATAGAGATGCGACTTATGAGCCTTCCAGAAGGTCCCTTAACTGGTTAAAACTGAAGAAAGATTACATCGACAATATAGGGGACTCGCTTGATTTGGTACCAATAGCGGCTTTCCATGGCCGGGGGAAGCGCACAGGGGTTTATGGTGCATTTCTCCTCGCTTGCTACGACAATGATAATGAAGAATTTCAAAGCATTTGCAAAATAGGAACTGGGTTTTCTGAAGCAATGCTTGATGAACGGTCTGCTAGTCTACGTTCTAAAGTGATTGCTGAACCGAAGTCTTACTATCGATATGGGGACTCAATCAATCCTGATGTGTGGTTTGATCCTTCTGAGGTTTGGGAGGTTAAAGCTGCTGACTTGACAATCAGTCCAGTTCATCGTGCAGGAATTGGCATTGTGGATCCCAATAAGGGCATCTCTCTTCGATTTCCTCGGCTTGTTCGTGTACGGGAAGACAAGAATCCAGAGCAAGCCTCGTCATCTGAGCAAGTAGCTGAGATGTATAATGCTCAAAAACACAATCAACACAACAACCAAGAAGACAATGAAGATGATTGA 2355 42.17 MSSRPSAFDALMSGARAAAKKKPQASSPKKRKTLDSSIPSLKPSPTKALDLPPAIEQQSESQVLVSCNGASLGVSADTHNSLDVDQGLENGSDCGTKNAPVAKKMCASSIEERIGKLKSSISELKKKAKDFDPKSVACWKNGERVPFLFLCLTFDMISGESSRIMITDIVCNMLRTVMHSTPDDLVAIVYLLANKIAPSHEGLELGIGDASIIKALAEAFGRTEVQVKKQYKELGDLGLVAKASRSSQSMMRKPDALNVVKVFEMFRLIAKGNRKLTGMPQVEFVSVFGKKSTPIESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQAKLRIGLAEQTLLAALGQAAVYAEKHSKPPPHIQSPLEEATKIVKQVYSVLPVYDKIIPELLNGGVWNLSKTCSFTPGVPVGPMLAKPTKGVSEISNKFQDMEFTCEYKYDGERAQIHYMENDLVEIYSRNAERNTGKFPDVVAAVSRLKKSSVKSFILDCEIVAYDREKKKILPFQILSTRARKNVVVSDIKVDVCIFAFDLLYLNGQPLIQEELKVRREHLYNSFWEETGYFQFATAITTNDLEEIQKFLDAAVDESCEGLIIKTLDRDATYEPSRRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLDERSASLRSKVIAEPKSYYRYGDSINPDVWFDPSEVWEVKAADLTISPVHRAGIGIVDPNKGISLRFPRLVRVREDKNPEQASSSEQVAEMYNAQKHNQHNNQEDNEDD 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 186023 191838 - BLOR20189 Blo08g00019 63971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00019 784 ProSiteProfiles ATP-dependent DNA ligase family profile. 518 654 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Blo08g00019 784 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 404 622 - -
Blo08g00019 784 Gene3D DNA ligase/mRNA capping enzyme 441 566 - -
Blo08g00019 784 CDD OBF_DNA_ligase_I 624 769 - -
Blo08g00019 784 ProSitePatterns ATP-dependent DNA ligase signature 2. 590 616 IPR016059 GO:0003909
Blo08g00019 784 CDD Adenylation_DNA_ligase_I_Euk 401 619 - -
Blo08g00019 784 Coils Coil 107 127 - -
Blo08g00019 784 MobiDBLite consensus disorder prediction 1 50 - -
Blo08g00019 784 MobiDBLite consensus disorder prediction 757 774 - -
Blo08g00019 784 Pfam ATP dependent DNA ligase C terminal region 641 752 IPR012309 GO:0003910|GO:0006281|GO:0006310
Blo08g00019 784 Pfam DNA ligase N terminus 146 345 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Blo08g00019 784 PANTHER DNA LIGASE 1 62 273 - -
Blo08g00019 784 PANTHER DNA LIGASE 1 286 784 - -
Blo08g00019 784 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 204 767 IPR000977 GO:0003910|GO:0005524|GO:0071897
Blo08g00019 784 Gene3D - 121 414 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Blo08g00019 784 Pfam ATP dependent DNA ligase domain 412 616 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Blo08g00019 784 Gene3D - 422 620 - -
Blo08g00019 784 SUPERFAMILY Nucleic acid-binding proteins 624 770 IPR012340 -
Blo08g00019 784 MobiDBLite consensus disorder prediction 750 784 - -
Blo08g00019 784 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 436 444 IPR016059 GO:0003909
Blo08g00019 784 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 127 402 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Blo08g00019 784 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 62 273 - -
Blo08g00019 784 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 286 784 - -
Blo08g00019 784 Gene3D - 621 783 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00019 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] - csv:101213447 1180.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00019 Blo-Chr8:186023 Blo17g00436 Blo-Chr17:5334955 2.99E-163 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1100 . . . Bda09g01436 . . . . . . . . . . . . . . . . . . . . Cla02g02101 Cam02g2230 Cec02g2268 Cco02g2308 Clacu02g2212 Cmu02g2147 Cre02g2464 . . . . . Csa06g01233 Chy11g00843 . Blo08g00019 . . . Bpe08g00178 . Bma07g00168 . Sed05g2803 . Cmo20g00553 . Cma20g00522 . Car20g00461 Cpe16g00505 . Bhi10g00144 Tan05g0202 Cmetu11g1276 . Hepe08g0926 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00974 . 145 882 Core DNA Replication Machinery Family AT4G14700 65.6 2.2e-283 971.8
Blo03g00975 . 123 719 Core DNA Replication Machinery Family AT4G14700 57.4 7.9e-217 750.7
Blo03g00974 . 80 882 Core DNA Replication Machinery Family AT4G12620 62.7 2.4e-290 995.0
Blo03g00975 . 123 719 Core DNA Replication Machinery Family AT4G12620 58.0 1.3e-222 770.0
Blo17g00848 . 206 531 Core DNA Replication Machinery Family AT2G37560 62.7 2.8e-123 438.7
Blo01g00744 . 1 408 Core DNA Replication Machinery Family AT2G01120 54.3 5.0e-122 434.9
Blo01g00205 . 3 527 Core DNA Replication Machinery Family AT4G29910 57.7 5.4e-172 601.3
Blo10g00449 . 1 264 Core DNA Replication Machinery Family AT1G26840 69.3 1.7e-94 342.8
Blo01g00424 . 452 676 Core DNA Replication Machinery Family AT1G26840 68.4 1.0e-78 290.4
Blo15g00779 . 1 814 Core DNA Replication Machinery Family AT1G79150 56.2 1.5e-234 809.7
Blo15g00681 . 1 539 Core DNA Replication Machinery Family AT1G79150 52.1 8.0e-132 468.4
Blo03g01396 . 1 921 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1335.5
Blo14g00834 . 48 628 Core DNA Replication Machinery Family AT5G46280 78.8 2.6e-259 891.3
Blo10g00430 . 22 836 Core DNA Replication Machinery Family AT2G16440 72.0 0.0e+00 1130.5
Blo01g00598 . 1 709 Core DNA Replication Machinery Family AT2G07690 76.8 6.9e-313 1069.7
Blo08g00626 . 137 962 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1152.9
Blo06g00534 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.8 0.0e+00 1204.9
Blo14g00089 BCT 25 548 Core DNA Replication Machinery Family AT2G29680 53.7 4.7e-143 505.0
Blo13g01051 BCT 26 524 Core DNA Replication Machinery Family AT2G29680 54.0 1.8e-142 503.1
Blo14g00089 BCT 1 518 Core DNA Replication Machinery Family AT1G07270 51.4 4.3e-130 461.8
Blo13g01051 BCT 24 493 Core DNA Replication Machinery Family AT1G07270 52.8 1.1e-128 457.2
Blo15g00359 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.6 2.4e-255 878.2
Blo06g00379 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.1 9.2e-255 876.3
Blo09g00553 . 22 795 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1090.1
Blo04g01396 . 6 361 Core DNA Replication Machinery Family AT2G14050 73.8 1.9e-165 579.7
Blo06g00837 . 1 964 Core DNA Replication Machinery Family AT1G77320 50.5 1.6e-259 892.9
Blo05g00261 . 853 1159 Core DNA Replication Machinery Family AT4G02110 58.1 5.6e-102 369.8
Blo10g00626 . 101 299 Core DNA Replication Machinery Family AT1G80190 70.3 2.5e-79 292.0
Blo02g00887 . 38 182 Core DNA Replication Machinery Family AT3G12530 70.3 1.8e-58 222.2
Blo13g00859 CCT 479 644 Core DNA Replication Machinery Family AT1G19080 65.1 1.4e-60 229.6
Blo13g00859 CCT 479 644 Core DNA Replication Machinery Family AT3G55490 65.1 1.4e-60 229.6
Blo04g01050 . 1 1612 Core DNA Replication Machinery Family AT5G67100 56.9 0.0e+00 1704.5
Blo06g00822 . 130 744 Core DNA Replication Machinery Family AT1G67630 55.8 1.0e-195 680.2
Blo01g00167 . 1 435 Core DNA Replication Machinery Family AT1G67320 64.3 1.7e-182 636.0
Blo05g00533 . 4 861 Core DNA Replication Machinery Family AT5G63960 75.7 0.0e+00 1338.9
Blo07g01274 . 71 477 Core DNA Replication Machinery Family AT2G42120 68.8 1.4e-170 596.3
Blo01g00167 . 1 435 Core DNA Replication Machinery Family AT1G67320 64.3 1.7e-182 636.0
Blo14g00223 . 3 2123 Core DNA Replication Machinery Family AT1G08260 68.5 0.0e+00 2870.5
Blo14g00223 . 9 2238 Core DNA Replication Machinery Family AT2G27120 65.4 0.0e+00 2850.5
Blo15g00024 . 19 464 Core DNA Replication Machinery Family AT5G22110 69.5 1.2e-178 623.2
Blo08g00066 . 388 1290 Core DNA Replication Machinery Family AT5G22010 66.4 4.3e-304 1040.8
Blo02g01098 . 3 355 Core DNA Replication Machinery Family AT1G63160 83.9 3.1e-167 584.7
Blo11g00085 . 1 339 Core DNA Replication Machinery Family AT5G27740 79.4 2.7e-153 538.5
Blo12g01123 . 26 352 Core DNA Replication Machinery Family AT1G21690 79.6 9.7e-145 510.0
Blo18g00180 . 1 362 Core DNA Replication Machinery Family AT1G77470 78.1 2.9e-158 555.1
Blo16g00969 . 26 615 Core DNA Replication Machinery Family AT2G06510 68.9 1.5e-247 852.4
Blo03g00091 . 34 725 Core DNA Replication Machinery Family AT2G06510 50.5 1.3e-198 689.9
Blo06g01214 . 1 625 Core DNA Replication Machinery Family AT5G08020 67.1 1.3e-243 839.3
Blo15g00339 . 1 634 Core DNA Replication Machinery Family AT5G08020 65.7 8.5e-240 826.6
Blo06g01214 . 1 619 Core DNA Replication Machinery Family AT5G61000 66.3 1.4e-240 829.3
Blo15g00339 . 1 628 Core DNA Replication Machinery Family AT5G61000 65.8 5.2e-240 827.4
Blo03g00091 . 8 853 Core DNA Replication Machinery Family AT4G19130 51.3 4.1e-226 781.6
Blo18g00682 . 169 531 Core DNA Replication Machinery Family AT5G26680 84.0 1.0e-175 613.2
Blo13g00680 . 255 540 Core DNA Replication Machinery Family AT2G25100 68.5 3.4e-111 398.3
Blo08g00019 . 2 784 Core DNA Replication Machinery Family AT1G08130 67.2 3.6e-291 997.7
Blo08g00019 . 160 784 Core DNA Replication Machinery Family AT1G49250 65.5 3.7e-233 804.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009502 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo08g00019 Blo_Chr08 FPKM 4.995419 5.667607 3.212727 2.90024 3.972317 2.863412 3.642427 2.071453 1.787137 2.013332