Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo08g00019 | ATGTCTTCTCGCCCTTCTGCTTTCGATGCATTAATGTCTGGTGCTCGTGCCGCAGCGAAGAAAAAACCCCAAGCTTCATCTCCCAAGAAGCGTAAAACCCTAGATTCTTCAATCCCTTCCCTAAAACCTAGTCCTACCAAAGCCCTTGATTTGCCGCCGGCTATTGAGCAACAGAGTGAAAGTCAAGTTCTGGTCAGTTGTAATGGTGCTAGCTTAGGGGTTTCAGCAGATACCCATAATTCGTTAGATGTCGACCAAGGTCTGGAGAATGGTAGCGATTGCGGAACCAAGAATGCACCGGTTGCAAAGAAAATGTGTGCGTCGAGTATTGAGGAGAGAATAGGTAAATTGAAGAGTAGTATCTCCGAATTGAAGAAAAAGGCAAAAGATTTTGATCCGAAATCGGTAGCTTGTTGGAAAAATGGAGAACGCGTACCCTTTCTGTTTCTATGTTTGACTTTCGATATGATATCTGGGGAGTCTAGTCGGATTATGATTACTGATATAGTGTGCAATATGTTGAGGACTGTAATGCACTCCACGCCTGATGATTTGGTTGCCATCGTTTACCTTTTGGCCAACAAAATAGCTCCCTCGCATGAAGGGTTGGAGCTTGGAATTGGTGATGCCTCGATTATCAAAGCACTCGCAGAAGCTTTTGGGAGGACCGAAGTTCAGGTTAAAAAGCAATACAAGGAATTGGGAGATTTAGGTCTTGTTGCAAAAGCAAGCCGCTCATCTCAATCAATGATGCGAAAGCCTGATGCATTAAATGTTGTCAAAGTTTTTGAAATGTTTAGGCTGATTGCTAAGGGAAATAGAAAATTAACTGGCATGCCTCAGGTTGAGTTTGTTTCTGTTTTCGGAAAAAAATCAACTCCTATAGAATCTGGAAAGGATAGTCAAGAGAAAAAGAAGAACCATATAAAGTCACTTCTTGTAGCTGCCACTGACTGTGAACCCCTATATTTGATTCGACTACTGCAGGCAAAGTTGCGAATCGGATTGGCTGAGCAGACTCTTCTTGCTGCATTGGGCCAAGCTGCTGTATATGCTGAAAAACATTCGAAACCACCACCGCACATTCAATCTCCTTTAGAAGAGGCTACCAAGATTGTTAAACAAGTCTACTCAGTACTTCCAGTTTATGATAAAATTATCCCTGAGCTTCTCAATGGCGGTGTGTGGAATCTTTCCAAGACGTGTAGCTTTACACCAGGCGTCCCTGTTGGACCTATGCTGGCAAAACCAACTAAAGGTGTATCTGAGATCTCAAATAAATTCCAGGATATGGAATTTACCTGTGAGTATAAGTATGATGGGGAACGTGCCCAGATACATTACATGGAAAATGATTTGGTTGAGATATATAGCAGAAATGCCGAACGAAACACTGGGAAGTTCCCTGATGTTGTCGCTGCAGTATCAAGGTTAAAGAAATCATCTGTTAAATCATTTATTTTGGATTGTGAAATAGTTGCTTATGACCGAGAAAAGAAGAAGATTCTACCTTTTCAGATCCTAAGTACCCGAGCTCGCAAAAACGTGGTTGTAAGCGACATCAAGGTTGATGTTTGCATATTTGCATTTGATTTATTGTATCTTAATGGCCAACCGCTTATTCAGGAAGAACTGAAAGTTCGCAGAGAGCACCTTTATAATTCGTTTTGGGAAGAAACTGGGTACTTTCAGTTTGCCACAGCAATAACAACAAATGACCTTGAGGAAATACAGAAGTTTCTTGACGCTGCTGTTGATGAAAGTTGTGAAGGGTTAATTATCAAAACGCTAGATAGAGATGCGACTTATGAGCCTTCCAGAAGGTCCCTTAACTGGTTAAAACTGAAGAAAGATTACATCGACAATATAGGGGACTCGCTTGATTTGGTACCAATAGCGGCTTTCCATGGCCGGGGGAAGCGCACAGGGGTTTATGGTGCATTTCTCCTCGCTTGCTACGACAATGATAATGAAGAATTTCAAAGCATTTGCAAAATAGGAACTGGGTTTTCTGAAGCAATGCTTGATGAACGGTCTGCTAGTCTACGTTCTAAAGTGATTGCTGAACCGAAGTCTTACTATCGATATGGGGACTCAATCAATCCTGATGTGTGGTTTGATCCTTCTGAGGTTTGGGAGGTTAAAGCTGCTGACTTGACAATCAGTCCAGTTCATCGTGCAGGAATTGGCATTGTGGATCCCAATAAGGGCATCTCTCTTCGATTTCCTCGGCTTGTTCGTGTACGGGAAGACAAGAATCCAGAGCAAGCCTCGTCATCTGAGCAAGTAGCTGAGATGTATAATGCTCAAAAACACAATCAACACAACAACCAAGAAGACAATGAAGATGATTGA | 2355 | 42.17 | MSSRPSAFDALMSGARAAAKKKPQASSPKKRKTLDSSIPSLKPSPTKALDLPPAIEQQSESQVLVSCNGASLGVSADTHNSLDVDQGLENGSDCGTKNAPVAKKMCASSIEERIGKLKSSISELKKKAKDFDPKSVACWKNGERVPFLFLCLTFDMISGESSRIMITDIVCNMLRTVMHSTPDDLVAIVYLLANKIAPSHEGLELGIGDASIIKALAEAFGRTEVQVKKQYKELGDLGLVAKASRSSQSMMRKPDALNVVKVFEMFRLIAKGNRKLTGMPQVEFVSVFGKKSTPIESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQAKLRIGLAEQTLLAALGQAAVYAEKHSKPPPHIQSPLEEATKIVKQVYSVLPVYDKIIPELLNGGVWNLSKTCSFTPGVPVGPMLAKPTKGVSEISNKFQDMEFTCEYKYDGERAQIHYMENDLVEIYSRNAERNTGKFPDVVAAVSRLKKSSVKSFILDCEIVAYDREKKKILPFQILSTRARKNVVVSDIKVDVCIFAFDLLYLNGQPLIQEELKVRREHLYNSFWEETGYFQFATAITTNDLEEIQKFLDAAVDESCEGLIIKTLDRDATYEPSRRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLDERSASLRSKVIAEPKSYYRYGDSINPDVWFDPSEVWEVKAADLTISPVHRAGIGIVDPNKGISLRFPRLVRVREDKNPEQASSSEQVAEMYNAQKHNQHNNQEDNEDD | 784 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 186023 | 191838 | - | BLOR20189 | Blo08g00019 | 63971 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo08g00019 | 784 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 518 | 654 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Blo08g00019 | 784 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 404 | 622 | - | - | |
Blo08g00019 | 784 | Gene3D | DNA ligase/mRNA capping enzyme | 441 | 566 | - | - | |
Blo08g00019 | 784 | CDD | OBF_DNA_ligase_I | 624 | 769 | - | - | |
Blo08g00019 | 784 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 590 | 616 | IPR016059 | GO:0003909 | |
Blo08g00019 | 784 | CDD | Adenylation_DNA_ligase_I_Euk | 401 | 619 | - | - | |
Blo08g00019 | 784 | Coils | Coil | 107 | 127 | - | - | |
Blo08g00019 | 784 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Blo08g00019 | 784 | MobiDBLite | consensus disorder prediction | 757 | 774 | - | - | |
Blo08g00019 | 784 | Pfam | ATP dependent DNA ligase C terminal region | 641 | 752 | IPR012309 | GO:0003910|GO:0006281|GO:0006310 | |
Blo08g00019 | 784 | Pfam | DNA ligase N terminus | 146 | 345 | IPR012308 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Blo08g00019 | 784 | PANTHER | DNA LIGASE 1 | 62 | 273 | - | - | |
Blo08g00019 | 784 | PANTHER | DNA LIGASE 1 | 286 | 784 | - | - | |
Blo08g00019 | 784 | TIGRFAM | dnl1: DNA ligase I, ATP-dependent (dnl1) | 204 | 767 | IPR000977 | GO:0003910|GO:0005524|GO:0071897 | |
Blo08g00019 | 784 | Gene3D | - | 121 | 414 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Blo08g00019 | 784 | Pfam | ATP dependent DNA ligase domain | 412 | 616 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Blo08g00019 | 784 | Gene3D | - | 422 | 620 | - | - | |
Blo08g00019 | 784 | SUPERFAMILY | Nucleic acid-binding proteins | 624 | 770 | IPR012340 | - | |
Blo08g00019 | 784 | MobiDBLite | consensus disorder prediction | 750 | 784 | - | - | |
Blo08g00019 | 784 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 436 | 444 | IPR016059 | GO:0003909 | |
Blo08g00019 | 784 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 127 | 402 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Blo08g00019 | 784 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 62 | 273 | - | - | |
Blo08g00019 | 784 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 286 | 784 | - | - | |
Blo08g00019 | 784 | Gene3D | - | 621 | 783 | IPR012340 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo08g00019 | Blo-Chr8:186023 | Blo17g00436 | Blo-Chr17:5334955 | 2.99E-163 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo08g00019 | K10747 | - | csv:101213447 | 1180.24 |