Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00021 ATGGAACCGTTCCCGACAAACCCACATCTGCAATTCCATGATTTGGACTTGAAGATTCGTGATTTCATTGCCGACCCTCATTTCCATCAGTTAGTCGATTTGATTGGCGGCGAACACGAAGATCCCGTCTTCAACTTTGATCTCGATCTCATCAATGGTTGCTTTGCGGGTACGGGGCCCAGTACAAGCCCTGAATTTGGGTTCGGTCCTGATTCTATCGCTGAGTTGGATCAGAGGTCTGTGTTTGAGGAGTTGGTGAGTTTTGATGGAGGAGAAATGAAGGGAAAGGAAGGGGAGGAGGACGATGATAATGAAGTAGACGATTCTTCAGCTGTTATAACAATGGCGACCAAAGGGACGAAGCTTGATCGATCAAGAACTTTGATATCAGAGAGGAAAAGAAGAGGGAGGATGAAAGAGAAGCTTCACAACCTGCGTTCTTTAGTTCCGAATATAACAAAGATGAACAAGGCCTCCATTGTTGGAGATGCTGTTTCGTTCGTGCAAGAACTTCAAATGCAGGCGAAGAAGCTCAGATCAGAGATAGCTGTTCTCGAGGCATCCATAGCTGGATCAGAAAGCCATCACCAGCAAACTGAAAACCCTAGAAAAAAGTTTCAAGCTCCAATCAACCATAACCTAATCGCTCCAAAGAAAATTATTAATCAGATGGACGTGTTTCAAGTGGAGGAAAGAGGGTTTTACGTTAGACTGGTGAGTGAAAGAAGAGAAGGCGTAGCCATAGCACTATACAAGGTTCTCGAATCCCTTACGAGCTTCAATCTTCAGAGCTCAAATTTGGCTATGGCTTCTGAGAGATTTGTCCTCACAGCCACCATGAATGTGAGGGATGGGGAGAAGGACATTAATTTGCCAAATTTGAAGCTTTGGGTGACTGGGGCTCTTCTTAGCCATGGATTTGAACTTAGACCCCAACATTAA 942 44.69 MEPFPTNPHLQFHDLDLKIRDFIADPHFHQLVDLIGGEHEDPVFNFDLDLINGCFAGTGPSTSPEFGFGPDSIAELDQRSVFEELVSFDGGEMKGKEGEEDDDNEVDDSSAVITMATKGTKLDRSRTLISERKRRGRMKEKLHNLRSLVPNITKMNKASIVGDAVSFVQELQMQAKKLRSEIAVLEASIAGSESHHQQTENPRKKFQAPINHNLIAPKKIINQMDVFQVEERGFYVRLVSERREGVAIALYKVLESLTSFNLQSSNLAMASERFVLTATMNVRDGEKDINLPNLKLWVTGALLSHGFELRPQH 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 199617 200843 + BLOR20191 Blo08g00021 63973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00021 313 SMART finulus 128 177 IPR011598 GO:0046983
Blo08g00021 313 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 88 308 - -
Blo08g00021 313 Coils Coil 168 188 - -
Blo08g00021 313 PANTHER TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 88 308 - -
Blo08g00021 313 Gene3D - 115 188 IPR036638 GO:0046983
Blo08g00021 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 194 IPR036638 GO:0046983
Blo08g00021 313 Pfam Helix-loop-helix DNA-binding domain 127 172 IPR011598 GO:0046983
Blo08g00021 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo03g01298 Blo08g00021 CCT
Blo03g01076 Blo08g00021 CCT
Blo08g00021 Blo14g00203 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00021 Blo-Chr8:199617 Blo14g00682 Blo-Chr14:15294811 1.86E-18 dispersed
Blo14g00203 Blo-Chr14:1730219 Blo08g00021 Blo-Chr8:199617 4.50E-146 wgd
Blo03g01298 Blo-Chr3:39310381 Blo08g00021 Blo-Chr8:199617 6.06E-99 wgd
Blo03g01076 Blo-Chr3:37143171 Blo08g00021 Blo-Chr8:199617 9.68E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12702 PF00010 HLH 1.40E-09 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00021 - - tcc:18590468 311.612