Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00022 ATGGAAGAAGATCAGTTTGTGGGATCGCCTGATCGAGATCAGATGGTTGTGATCAGAGGCAAACGCACCAAACGTTTGAGGCTTTCGTCGCCGTCGTCAAGCGGCAGAGAAGAAGATTTTAGCTCGACTTGGTCAGTAACGACTGCCGGTGAGGTTGAAGACAGTACAGAAGAAGAAGAAGACATGGCTAACTGCTTAATTCTCTTAGCTCAAGGTGATAGTCCTAAAAAGAGAGCCAAAAGTGGGTCAAGGTTGGATGAGATGGCTGGAACCGCCATAGCCAAGGCTAGTTTTTGTGCCTACGAGTGCAAGACTTGTAACAGAGCCTTCCCTTCTTTCCAAGCACTCGGTGGTCACAGGGCTAGCCACAAGAAGCCTAAGCTCATTCCCACCTCTATCGCCGCCATGGGAGAGAAGGTGAAAAAGCTTTCGTCTTTCACCGACCCAGATGAAACAGAAGAAACTAAATTCAACGAAAAGACAAATCCAAACAAGGGTAAGTTCCATGAGTGTTCGATTTGTGGTCTAGAGTTCAGTTCAGGCCAAGCTTTAGGAGGTCATATGAGAAGACACAGACCTCAGGCAGCCATGGTGGTTGATGAATCTCATCAGATCAAGGAGACAAACACTCTACCGTTGGATCTTAACCTTCCACCGCCGGAAGATGATCACCGGGACACCATGTTCCAGTTTCCGGCCACCCAACAGTCTCTTGTTTTCCCTTCTCCTGCTTTGGTCGATTGTTATTACTGA 753 47.81 MEEDQFVGSPDRDQMVVIRGKRTKRLRLSSPSSSGREEDFSSTWSVTTAGEVEDSTEEEEDMANCLILLAQGDSPKKRAKSGSRLDEMAGTAIAKASFCAYECKTCNRAFPSFQALGGHRASHKKPKLIPTSIAAMGEKVKKLSSFTDPDETEETKFNEKTNPNKGKFHECSICGLEFSSGQALGGHMRRHRPQAAMVVDESHQIKETNTLPLDLNLPPPEDDHRDTMFQFPATQQSLVFPSPALVDCYY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 206132 206884 + BLOR20192 Blo08g00022 63974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00022 250 PANTHER ZINC FINGER PROTEIN ZAT5 7 250 - -
Blo08g00022 250 MobiDBLite consensus disorder prediction 27 51 - -
Blo08g00022 250 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Blo08g00022 250 SUPERFAMILY beta-beta-alpha zinc fingers 101 191 IPR036236 -
Blo08g00022 250 Gene3D Classic Zinc Finger 98 191 - -
Blo08g00022 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Blo08g00022 250 SMART c2h2final6 169 191 IPR013087 -
Blo08g00022 250 SMART c2h2final6 101 123 IPR013087 -
Blo08g00022 250 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 7 250 - -
Blo08g00022 250 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Blo08g00022 250 MobiDBLite consensus disorder prediction 1 60 - -
Blo08g00022 250 Pfam C2H2-type zinc finger 169 194 - -
Blo08g00022 250 Pfam C2H2-type zinc finger 100 126 - -
Blo08g00022 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo03g01075 Blo08g00022 CCT
Blo03g01075 Blo08g00022 ECH
Blo08g00022 Blo14g00204 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00022 Blo-Chr8:206132 Blo12g00486 Blo-Chr12:22617413 6.91E-52 dispersed
Blo01g01186 Blo-Chr1:43841428 Blo08g00022 Blo-Chr8:206132 3.17E-45 wgd
Blo14g00204 Blo-Chr14:1732744 Blo08g00022 Blo-Chr8:206132 1.73E-119 wgd
Blo03g01075 Blo-Chr3:37137528 Blo08g00022 Blo-Chr8:206132 5.93E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12703 PF13912 zf-C2H2_6 1.00E-11 CL0361 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00022 - - pop:18098254 218.009