Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00041 ATGGCAGAAGAGCATCGATGCCGGGCCCCTAAGCTTTGTGTCAACAACTGCGGCTTCTTCGGAAGTCCGGCGACTCAAAATCTCTGCTCCAAATGTTACCGAGACCTTCAGCTTAAGGAACAACAATCCTCCTCCGCCGTGCTGGCCCTCAGCCAAACTCTAGCCTCCTCCTCCTCTTCCTCTTCCTCATCCTCCGCCGTCTCATCTCTCAGTGCTCCACCGGCAATCACTCAATCTACAACTTGCGAGCAGATTCAGCCATCTCCGGAGATCGGAATACGAGGAGGAGAGACCGCAGCAGTTACGACTCCGGCGAACAAGTGCGGGAGATGCACGAGGCGCGTGGGGCTAACGGGTTTCAAGTGCCGCTGTGGGACGACGTTCTGCGGTTCTCACCGGTACCCGGAGCAACACAGCTGCGAGTTTGACTTCAAGGGGATGGGGAAGGATGAGATCGCCAAGGCGAATCCGTTAGTCCTCTATCTGTGCATTCTACGGCTGGTCACCGTTGGCAACGCCAGCAAAGGGCCTGGAAATTTCACTGCTCAAATGAAGGTCAAGGTTCGTCCATTATGTAGCATTTTGATCCTCATTGTCTTTGCCACCACTCTCAGCTACCGCACCATAGTCCACCGCGGCTTCATTGGATATGAGCTAGATACCTATGTGGTTTCTCAAAAGCCACCCACTCTTGAGTTCAATGAGACGCTGCAGAAATTTGCAGCCGTGGATATGGGAGACGCGCAGTTCAACCGAGAAATGGAGCAGCTTTTGGGAGAAAATTTTGGAAGCAGTAGAATTGAGAGATCATTCGCTGTTTTGTCAAGATTTCATCAACATGGTGTGGGAGCAGTGTCCTCAAATGTCTTAAAAGCATCGCTTAAGTCCCCAGATTTTTACCAATACTGGCTTGATTTCCGCAGGACTTTAAATGATTATTCTCGAAAAAAAAGGTTTCAGTCAGATATAATGTCAGAACTGATAAAGATAGTGAAGAAGCCGCTTGACATGCACATTGATTCATTGAGACCGAACCAAAGCTACTCAACTTGTGCAGTCGTTGGAAATAGTGGAATTTTGTTGCAAAGTAATTACGGTGAGTTAATAGATAGTCATGAGTTTGTTATTCGATTAAACAATGCTAGAATAGAGCCGTATCAGAGCAAAGTTGGGTCAAAAACTAGCATTGCGTTCATCAACAGCAACATCCTTCACTATTGTTCCGTAAGAGTAGGGTGTGATTGCCACCCATATGGGTTAAATGTGCCCATTGTGATGTACATTTGCCAGCCAAATCATTTCTTGGATTACACCATTTGCAATTTATCACATAAACAGCGTATACTTGTCACTGATCCTCGATTTGATGTGTTGTGTTCTCGGATTGTGAAGTATTACTCCCTCAAACGGTTTGTGGAGCAGACTGGGAAGCCTTTGGAGGATTGGAGTGCTGCACATGATGGACCTATGTTCCATTACTCCTCTGGTATGCAAGCTATTATGCTAGCTCTGGGAATTTGTGAGAAAGTAAGTATTTTTGGCTTCGGCAAAGTAGCTTCAGCCAAGCATCACTACCATACAAATCAAAGAGCTGAACTGGATTTGCATGACTATGAGGCAGAATATTCTTTTTACCATGATCTAATAGAGAAGCCCCATGACATACCTTTTATTTCGGCCAAGTTCAAGGTACCTCCAGTGGTTCTTTATCAGTGA 1716 46.27 MAEEHRCRAPKLCVNNCGFFGSPATQNLCSKCYRDLQLKEQQSSSAVLALSQTLASSSSSSSSSSAVSSLSAPPAITQSTTCEQIQPSPEIGIRGGETAAVTTPANKCGRCTRRVGLTGFKCRCGTTFCGSHRYPEQHSCEFDFKGMGKDEIAKANPLVLYLCILRLVTVGNASKGPGNFTAQMKVKVRPLCSILILIVFATTLSYRTIVHRGFIGYELDTYVVSQKPPTLEFNETLQKFAAVDMGDAQFNREMEQLLGENFGSSRIERSFAVLSRFHQHGVGAVSSNVLKASLKSPDFYQYWLDFRRTLNDYSRKKRFQSDIMSELIKIVKKPLDMHIDSLRPNQSYSTCAVVGNSGILLQSNYGELIDSHEFVIRLNNARIEPYQSKVGSKTSIAFINSNILHYCSVRVGCDCHPYGLNVPIVMYICQPNHFLDYTICNLSHKQRILVTDPRFDVLCSRIVKYYSLKRFVEQTGKPLEDWSAAHDGPMFHYSSGMQAIMLALGICEKVSIFGFGKVASAKHHYHTNQRAELDLHDYEAEYSFYHDLIEKPHDIPFISAKFKVPPVVLYQ 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 347988 351773 + BLOR20211 Blo08g00041 63993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00041 571 Gene3D - 1 71 - -
Blo08g00041 571 Pfam Glycosyltransferase family 29 (sialyltransferase) 313 550 IPR001675 GO:0006486|GO:0008373
Blo08g00041 571 SMART AN1_Zf_4 108 145 IPR000058 GO:0008270
Blo08g00041 571 SUPERFAMILY AN1-like Zinc finger 100 160 IPR035896 -
Blo08g00041 571 PANTHER BETA-1,6-GALACTOSYLTRANSFERASE GALT29A 184 571 - -
Blo08g00041 571 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Blo08g00041 571 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 54 - -
Blo08g00041 571 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Blo08g00041 571 Gene3D Glycosyl transferase family 29 273 554 IPR038578 -
Blo08g00041 571 ProSiteProfiles Zinc finger AN1-type profile. 102 148 IPR000058 GO:0008270
Blo08g00041 571 Pfam AN1-like Zinc finger 108 144 IPR000058 GO:0008270
Blo08g00041 571 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677|GO:0008270
Blo08g00041 571 Gene3D - 92 160 IPR035896 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01195 Blo-Chr1:44357674 Blo08g00041 Blo-Chr8:347988 1.54E-39 dispersed
Blo07g00470 Blo-Chr7:10178555 Blo08g00041 Blo-Chr8:347988 4.56E-23 dispersed
Blo08g00041 Blo-Chr8:347988 Blo19g00294 Blo-Chr19:18475417 5.32E-43 dispersed
Blo16g00287 Blo-Chr16:6837215 Blo08g00041 Blo-Chr8:347988 3.07E-07 dispersed
Blo08g00041 Blo-Chr8:347988 Blo12g00494 Blo-Chr12:22735088 5.03E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00041 K00786 - csv:101218639 514.227