Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00042 ATGGGTTTAAGAAGCCACCTCGAGGAAGAAAATATTCTTTGTTTTCAGTCCCAACCTTTCATCGAGTGGCTCAAACCACCCTCCTCTTCCTCTTCTTCATCTGCTCTTTCGTCTTCCGTTGCTCACATGTCGGATTCCAACCAGTGTCTTCCTCTTCTGAGCAGGTTCACAGAGCAAAAGCCAGTGAAGAAGGAAGAAGATGACTATAAAGTCATGGTGACTCTGCATATAGGATTGCCCAGTAAAGACGATTCTGATCAAGATGAAGAAAATCACAAGGGTTTTAAAGAAATATCCAGGAACCGCTCTAATGGCTGCCCTTTTAACTCAGAAACCAGATTTTGGATTCCTACTCCTTCACAGATCCTTGTGGGGCCGATGCAGTTTGCTTGCTCAATATGCAGCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATACAGAAAAGGGCCAGATTCACTGCGAGGAACACAGCCAGCAGCAATGCTAAGATTACCTTGCTATTGCTGTGCTCATGGCTGCAAGAACAACATAAACCATCCAAGAGCAAAGCCATTGAAGGACTTTAGAACTCTCCAAACCCACTACAAGAGGAAGCATGGCTCCAAGCCATTTTCCTGCAGAAAATGTGGGAAGCAATTTGCAGTGAAAGGAGACTGGAGAACCCACGAGAAAAATTGTGGGAAATTATGGTATTGTTCTTGCGGATCGGATTTCAAACACAAAAGGTCACTCAAAGATCATATCAGGTCGTTTGGAAATGGCCACTCTCCAAACCCTCCTCTTGATGACAAGGAGTTTTGCACAAATGTGTCCGAAGAAGATGAGTTTACTGTCTTCTGA 867 44.29 MGLRSHLEEENILCFQSQPFIEWLKPPSSSSSSSALSSSVAHMSDSNQCLPLLSRFTEQKPVKKEEDDYKVMVTLHIGLPSKDDSDQDEENHKGFKEISRNRSNGCPFNSETRFWIPTPSQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEYRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFSCRKCGKQFAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGNGHSPNPPLDDKEFCTNVSEEDEFTVF 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 355084 357098 - BLOR20212 Blo08g00042 63994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00042 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 269 IPR013087 -
Blo08g00042 288 SUPERFAMILY beta-beta-alpha zinc fingers 120 152 IPR036236 -
Blo08g00042 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 233 IPR013087 -
Blo08g00042 288 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Blo08g00042 288 SUPERFAMILY beta-beta-alpha zinc fingers 199 233 IPR036236 -
Blo08g00042 288 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 42 - -
Blo08g00042 288 SMART c2h2final6 213 233 IPR013087 -
Blo08g00042 288 SMART c2h2final6 176 208 IPR013087 -
Blo08g00042 288 SMART c2h2final6 129 151 IPR013087 -
Blo08g00042 288 MobiDBLite consensus disorder prediction 81 99 - -
Blo08g00042 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Blo08g00042 288 Gene3D Classic Zinc Finger 128 151 - -
Blo08g00042 288 PANTHER ZINC FINGER PROTEIN WIP2 1 42 IPR043584 GO:0003700|GO:0010468
Blo08g00042 288 PANTHER ZINC FINGER PROTEIN WIP2 44 284 IPR043584 GO:0003700|GO:0010468
Blo08g00042 288 MobiDBLite consensus disorder prediction 80 102 - -
Blo08g00042 288 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 44 284 - -
Blo08g00042 288 Gene3D Classic Zinc Finger 209 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00042 Blo-Chr8:355084 Blo12g00588 Blo-Chr12:24185750 5.47E-102 dispersed
Blo08g00042 Blo-Chr8:355084 Blo11g00133 Blo-Chr11:1026571 4.62E-103 transposed
Blo08g00042 Blo-Chr8:355084 Blo05g00203 Blo-Chr5:2073554 5.14E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12705 PF13912 zf-C2H2_6 0.00012 CL0361 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00042 - - qsu:111992789 422.935