Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00058 ATGTCTGGCTCTCCGGCTCCCAACTCGTGGGAGCATAAGCCTGGACAGATCGCTCAGTCTCAGAAGCGGCAGCTTCCTTCTTCTTCTATGAAACCGCCATTTGCTGCTTTTGGAGACTATCACCGATTTGCACCCGACCCTCGCAGAGTCTCCGATCAAGATTCTGAGGGTATTGTTGTTAAATCACCGCAATTAAAGAGAAAAAGTGGGACGCCAGATTTTGAAGCTGAGTCTAGTGATAGAGCTACTGGTCCTGGATTCCCTGAAGTATCCAGCAGCTCTCTTCAAACACCTGGATCGGTAAAAGGAGGAAAAGGAAGCAAATCAAGGCTTACAAAGTGCAGTAGATCAGTACCTCAAACTCCTGTTTCAAACGTAGGTGAGTATTTAACCCAAAACTCAATTTTGGCCTTGTATATTTTTATTCGTTATTATATGACTGCAATGAAACTTTTACTAAAAGTGACAGGTTCACCTTCTGGCAATAATCTCACATCAGCAGGTCCGTGCCGTTATGACAGTTCCCTAGGTCTCTTGACAAAAAAGTTTATCAACCTGATCAAACAAGCAGAAGATGGTATCCTAGACCTGAATAAAGCTGCAGACACATTAGAGGTGCAAAAAAGGCGGATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTGATAGAAAAGAAGCTGAAAAACAGAATTCAATGGAAGGGGCTTGATGTCTCAAGGCCAGGGGATGATGATGGAAATTTTTCTAGCTTACAGGCAGAAGTCGAAAACCTTTCCATTGAGGAGCGTGGATTAGATGAACAAATAAGAGAAATGCAGGAAAGATTAAGGGATCTTAGTGAAAATGACAACAATCAGAGGTGGCTTTTTGTCACTGAAGAAGATATCAAAGGTTTGCCTTGTTTCCAGAATGAAACGTTGATAGCTATTAAGGCCCCACATGGGACTACTTTAGAAGTACCTGATCCTGACGAGTGCATTGAAGCTGTTGACTATCCCCAAAGGAGGTACAGGATAGTCCTAAGAAGCACTATGGGTCCTGTAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGGTTAATGGTGTTGAAGTGCCTCTGACCACAATCTTGCCTTCAACTTCCGGGTACAATGAGCCTCCCATGACAACAATGGAAATGGAAGAAAGTAGAGGGAAGAGTATTGAAATACAAGAACAAGATGTTCATCAAATGTGCTCAGATCTTAATGCTTCACAGGACTTTGTGGGTGGGATTATGAAGATTGTTCCCTCAGTAGTGGACAGTGACGCTGATTACTGGCTTCTATCAGACGCTGATGTTAGCATTACTGACATGTGGAGAACTGAAACTGGCGTTGAATGGAACGATTTGGGTACAATTAATGAAGATTACCCTATGTCCAGCATTGACGAGATAGCCAATATCAGCTTGCCTCTTCCGCAGGCATCACCAGCCCCATCTGTTGCAGTGCAGCTTGCAACAATTGGAGAAAGAGCCACTGTGGCAGGAAACCTGGTAGGAGAAGCAGCCTTGTGTGCAGCATATGTCAGAGCAAAGCAGAGCTTGGACATCAATGCCTGCAGAGACGAGTGCATAACAGAGAGTAAGAGATGA 1629 43.52 MSGSPAPNSWEHKPGQIAQSQKRQLPSSSMKPPFAAFGDYHRFAPDPRRVSDQDSEGIVVKSPQLKRKSGTPDFEAESSDRATGPGFPEVSSSSLQTPGSVKGGKGSKSRLTKCSRSVPQTPVSNVGEYLTQNSILALYIFIRYYMTAMKLLLKVTGSPSGNNLTSAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDDDGNFSSLQAEVENLSIEERGLDEQIREMQERLRDLSENDNNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDECIEAVDYPQRRYRIVLRSTMGPVDVYLVSQFEEKFEEVNGVEVPLTTILPSTSGYNEPPMTTMEMEESRGKSIEIQEQDVHQMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTETGVEWNDLGTINEDYPMSSIDEIANISLPLPQASPAPSVAVQLATIGERATVAGNLVGEAALCAAYVRAKQSLDINACRDECITESKR 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 472288 478202 - BLOR20228 Blo08g00058 64010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00058 542 SMART E2F_TDP_2 171 236 IPR003316 GO:0005667|GO:0006355
Blo08g00058 542 Gene3D - 246 356 - -
Blo08g00058 542 PANTHER TRANSCRIPTION FACTOR E2FB 19 133 - -
Blo08g00058 542 SUPERFAMILY Winged helix DNA-binding domain 171 234 IPR036390 -
Blo08g00058 542 PANTHER TRANSCRIPTION FACTOR E2FB 155 489 - -
Blo08g00058 542 PANTHER TRANSCRIPTION FACTOR E2F 19 133 IPR015633 GO:0000978|GO:0006357
Blo08g00058 542 MobiDBLite consensus disorder prediction 1 28 - -
Blo08g00058 542 Gene3D - 166 238 IPR036388 -
Blo08g00058 542 SUPERFAMILY E2F-DP heterodimerization region 249 356 IPR037241 -
Blo08g00058 542 Coils Coil 187 207 - -
Blo08g00058 542 Coils Coil 249 283 - -
Blo08g00058 542 Pfam E2F transcription factor CC-MB domain 252 355 IPR032198 GO:0046983
Blo08g00058 542 MobiDBLite consensus disorder prediction 1 120 - -
Blo08g00058 542 MobiDBLite consensus disorder prediction 85 103 - -
Blo08g00058 542 Pfam E2F/DP family winged-helix DNA-binding domain 173 236 IPR003316 GO:0005667|GO:0006355
Blo08g00058 542 PANTHER TRANSCRIPTION FACTOR E2F 155 489 IPR015633 GO:0000978|GO:0006357
Blo08g00058 542 CDD E2F_DD 250 356 IPR032198 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00058 K06620 E2F3; transcription factor E2F3 - csv:101219318 682.559
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo08g00058 Blo14g00243 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00058 Blo-Chr8:472288 Blo12g00527 Blo-Chr12:23213746 7.64E-129 dispersed
Blo11g00852 Blo-Chr11:15208550 Blo08g00058 Blo-Chr8:472288 1.08E-06 transposed
Blo14g00243 Blo-Chr14:2153627 Blo08g00058 Blo-Chr8:472288 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00208 . 3 377 E2F-DP Transcription Factor Family AT3G48160 54.6 1.4e-102 370.2
Blo04g00746 BCT 3 358 E2F-DP Transcription Factor Family AT3G48160 57.2 7.2e-94 341.3
Blo04g00746 BCT 21 359 E2F-DP Transcription Factor Family AT3G01330 50.6 8.9e-80 294.3
Blo07g00511 . 80 247 E2F-DP Transcription Factor Family AT5G02470 50.9 5.7e-40 161.8
Blo14g00243 BCT 17 447 E2F-DP Transcription Factor Family AT2G36010 53.8 2.7e-119 426.0
Blo08g00058 BCT 22 478 E2F-DP Transcription Factor Family AT2G36010 50.6 1.5e-114 410.2
Blo14g00243 BCT 10 458 E2F-DP Transcription Factor Family AT5G22220 55.6 1.6e-108 390.2
Blo08g00058 BCT 11 491 E2F-DP Transcription Factor Family AT5G22220 52.7 2.5e-106 382.9
Blo12g00527 . 227 520 E2F-DP Transcription Factor Family AT5G22220 58.8 4.0e-80 295.8
Blo07g00511 . 80 247 E2F-DP Transcription Factor Family AT5G02470 50.9 5.7e-40 161.8
Blo14g00243 BCT 10 458 E2F-DP Transcription Factor Family AT5G22220 55.6 1.6e-108 390.2
Blo08g00058 BCT 11 491 E2F-DP Transcription Factor Family AT5G22220 52.7 2.5e-106 382.9
Blo12g00527 . 227 520 E2F-DP Transcription Factor Family AT5G22220 58.8 4.0e-80 295.8
Blo14g00243 BCT 17 447 E2F-DP Transcription Factor Family AT2G36010 53.8 2.7e-119 426.0
Blo08g00058 BCT 22 478 E2F-DP Transcription Factor Family AT2G36010 50.6 1.5e-114 410.2
Blo04g00746 BCT 21 359 E2F-DP Transcription Factor Family AT3G01330 50.6 8.9e-80 294.3
Blo16g00208 . 3 377 E2F-DP Transcription Factor Family AT3G48160 54.6 1.4e-102 370.2
Blo04g00746 BCT 3 358 E2F-DP Transcription Factor Family AT3G48160 57.2 7.2e-94 341.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12707 PF16421 E2F_CC-MB 8.00E-34 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo08g00058 Blo_Chr08 FPKM 0.0 0.0 0.0 0.0 1.21316 1.082877 0.91193 0.0 0.0 0.0