Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00058 ATGTCTGGCTCTCCGGCTCCCAACTCGTGGGAGCATAAGCCTGGACAGATCGCTCAGTCTCAGAAGCGGCAGCTTCCTTCTTCTTCTATGAAACCGCCATTTGCTGCTTTTGGAGACTATCACCGATTTGCACCCGACCCTCGCAGAGTCTCCGATCAAGATTCTGAGGGTATTGTTGTTAAATCACCGCAATTAAAGAGAAAAAGTGGGACGCCAGATTTTGAAGCTGAGTCTAGTGATAGAGCTACTGGTCCTGGATTCCCTGAAGTATCCAGCAGCTCTCTTCAAACACCTGGATCGGTAAAAGGAGGAAAAGGAAGCAAATCAAGGCTTACAAAGTGCAGTAGATCAGTACCTCAAACTCCTGTTTCAAACGTAGGTGAGTATTTAACCCAAAACTCAATTTTGGCCTTGTATATTTTTATTCGTTATTATATGACTGCAATGAAACTTTTACTAAAAGTGACAGGTTCACCTTCTGGCAATAATCTCACATCAGCAGGTCCGTGCCGTTATGACAGTTCCCTAGGTCTCTTGACAAAAAAGTTTATCAACCTGATCAAACAAGCAGAAGATGGTATCCTAGACCTGAATAAAGCTGCAGACACATTAGAGGTGCAAAAAAGGCGGATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTGATAGAAAAGAAGCTGAAAAACAGAATTCAATGGAAGGGGCTTGATGTCTCAAGGCCAGGGGATGATGATGGAAATTTTTCTAGCTTACAGGCAGAAGTCGAAAACCTTTCCATTGAGGAGCGTGGATTAGATGAACAAATAAGAGAAATGCAGGAAAGATTAAGGGATCTTAGTGAAAATGACAACAATCAGAGGTGGCTTTTTGTCACTGAAGAAGATATCAAAGGTTTGCCTTGTTTCCAGAATGAAACGTTGATAGCTATTAAGGCCCCACATGGGACTACTTTAGAAGTACCTGATCCTGACGAGTGCATTGAAGCTGTTGACTATCCCCAAAGGAGGTACAGGATAGTCCTAAGAAGCACTATGGGTCCTGTAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGGTTAATGGTGTTGAAGTGCCTCTGACCACAATCTTGCCTTCAACTTCCGGGTACAATGAGCCTCCCATGACAACAATGGAAATGGAAGAAAGTAGAGGGAAGAGTATTGAAATACAAGAACAAGATGTTCATCAAATGTGCTCAGATCTTAATGCTTCACAGGACTTTGTGGGTGGGATTATGAAGATTGTTCCCTCAGTAGTGGACAGTGACGCTGATTACTGGCTTCTATCAGACGCTGATGTTAGCATTACTGACATGTGGAGAACTGAAACTGGCGTTGAATGGAACGATTTGGGTACAATTAATGAAGATTACCCTATGTCCAGCATTGACGAGATAGCCAATATCAGCTTGCCTCTTCCGCAGGCATCACCAGCCCCATCTGTTGCAGTGCAGCTTGCAACAATTGGAGAAAGAGCCACTGTGGCAGGAAACCTGGTAGGAGAAGCAGCCTTGTGTGCAGCATATGTCAGAGCAAAGCAGAGCTTGGACATCAATGCCTGCAGAGACGAGTGCATAACAGAGAGTAAGAGATGA 1629 43.52 MSGSPAPNSWEHKPGQIAQSQKRQLPSSSMKPPFAAFGDYHRFAPDPRRVSDQDSEGIVVKSPQLKRKSGTPDFEAESSDRATGPGFPEVSSSSLQTPGSVKGGKGSKSRLTKCSRSVPQTPVSNVGEYLTQNSILALYIFIRYYMTAMKLLLKVTGSPSGNNLTSAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDDDGNFSSLQAEVENLSIEERGLDEQIREMQERLRDLSENDNNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDECIEAVDYPQRRYRIVLRSTMGPVDVYLVSQFEEKFEEVNGVEVPLTTILPSTSGYNEPPMTTMEMEESRGKSIEIQEQDVHQMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTETGVEWNDLGTINEDYPMSSIDEIANISLPLPQASPAPSVAVQLATIGERATVAGNLVGEAALCAAYVRAKQSLDINACRDECITESKR 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 472288 478202 - BLOR20228 Blo08g00058 64010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00058 542 SMART E2F_TDP_2 171 236 IPR003316 GO:0005667|GO:0006355
Blo08g00058 542 Gene3D - 246 356 - -
Blo08g00058 542 PANTHER TRANSCRIPTION FACTOR E2FB 19 133 - -
Blo08g00058 542 SUPERFAMILY Winged helix DNA-binding domain 171 234 IPR036390 -
Blo08g00058 542 PANTHER TRANSCRIPTION FACTOR E2FB 155 489 - -
Blo08g00058 542 PANTHER TRANSCRIPTION FACTOR E2F 19 133 IPR015633 GO:0000978|GO:0006357
Blo08g00058 542 MobiDBLite consensus disorder prediction 1 28 - -
Blo08g00058 542 Gene3D - 166 238 IPR036388 -
Blo08g00058 542 SUPERFAMILY E2F-DP heterodimerization region 249 356 IPR037241 -
Blo08g00058 542 Coils Coil 187 207 - -
Blo08g00058 542 Coils Coil 249 283 - -
Blo08g00058 542 Pfam E2F transcription factor CC-MB domain 252 355 IPR032198 GO:0046983
Blo08g00058 542 MobiDBLite consensus disorder prediction 1 120 - -
Blo08g00058 542 MobiDBLite consensus disorder prediction 85 103 - -
Blo08g00058 542 Pfam E2F/DP family winged-helix DNA-binding domain 173 236 IPR003316 GO:0005667|GO:0006355
Blo08g00058 542 PANTHER TRANSCRIPTION FACTOR E2F 155 489 IPR015633 GO:0000978|GO:0006357
Blo08g00058 542 CDD E2F_DD 250 356 IPR032198 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo08g00058 Blo14g00243 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00058 Blo-Chr8:472288 Blo12g00527 Blo-Chr12:23213746 7.64E-129 dispersed
Blo11g00852 Blo-Chr11:15208550 Blo08g00058 Blo-Chr8:472288 1.08E-06 transposed
Blo14g00243 Blo-Chr14:2153627 Blo08g00058 Blo-Chr8:472288 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12707 PF16421 E2F_CC-MB 8.00E-34 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00058 K06620 - csv:101219318 682.559