Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00063 ATGGAAGAAGCAGGCATTGAAGTTCCTTCTCATTTTCTCTGCCCTATTTCCCTGCAAATGATGAGAGATCCAGTTACTGTCTCAACAGGTATCACTTATGATCGAGGGAGCATTGAAAAATGGCTGTTTTCCTGCAAAAACCATTTCTGTCCAGTTACGAAGCAGGCTCTTTTCGATTTAGATCTGACCCCTAACCACACTCTCCGACGATTGATCCAAGCTCGGTGCTCATTAAACGCCACCAATGACGTCGAGAGAATCCCCACTCCTAAGGCACAGCTCAACAAAGCCCAGATTATGAAAATCCTTACAGACGCTATCAAAGCGCCTAACATGAAGCTCATCTGCCTACGAAAACTCGGATCCATTGCTTCAGAAAGTGAAAGAAATAAAGCTCAATTAATTGATGCAGGGGCATTAGAATTTTTAGCTTCGGCAATGAAGAACGAGGAAGATGGAACTGTCGCAGAAGAAGCCATTGAGATTCTTTTCAACCTCAAATCCTCCGAAGAACATCTCAAAATTCTCGTGAATAAAGATTTCGAATTTATTGATTCGTTAGTTCGAGTTTTGAAGATTGGAAACAACCAATCTAGAGTCTATGCAACGATGTTGCTAAAATCAATCTTCGAAGTGGCCGATCCGATTCAATCTATAAGCGTAAACCGGAAAATTTTCTCCGAGATCGTTCATGTTATCCGAGACGAAATCTCCGAGCAAGTGTCAAAAAATGCTTTGAAGGTGCTGGCGGAGCTATGTCCATGGGGGAGAAATCGAATCAAAGCTGTGGAAGAAGGAGCAGTAACGGCGCTGATCGAACTTCTTCTAAACTCATCAGACAGGAGAATTTGCGAACTTTCGCTAATAGTTCTTGACCAGCTCTGCGGCTGTGCAGAGGGAAGAGCTGAGTTGACGGATCACGGAGGTGGGTTTGCCGTAATCTCAAAGAAAATACTTAGGGTTTCGAGAGTGGCAACTGAAAGAGGAGTTAGAATATTCTCCTCCATTTGTAAGTTTTCTGCAAATTCTAGGGTTCTTCAGGAGATGATGGAGGTCGGTGTGGTGATGAAGCTGTGTTTGGTGGTGCAAATGGAGTTCAGTTTGAAAACAAAAGAGAGGGCTAGAGAAACCCTAAAATTACACTCAAGGGTTTGGAAAAATTCCCCCTGTAACCCTCCCCATTTATTGGCTTCGTACCCTTCTTAA 1206 43.28 MEEAGIEVPSHFLCPISLQMMRDPVTVSTGITYDRGSIEKWLFSCKNHFCPVTKQALFDLDLTPNHTLRRLIQARCSLNATNDVERIPTPKAQLNKAQIMKILTDAIKAPNMKLICLRKLGSIASESERNKAQLIDAGALEFLASAMKNEEDGTVAEEAIEILFNLKSSEEHLKILVNKDFEFIDSLVRVLKIGNNQSRVYATMLLKSIFEVADPIQSISVNRKIFSEIVHVIRDEISEQVSKNALKVLAELCPWGRNRIKAVEEGAVTALIELLLNSSDRRICELSLIVLDQLCGCAEGRAELTDHGGGFAVISKKILRVSRVATERGVRIFSSICKFSANSRVLQEMMEVGVVMKLCLVVQMEFSLKTKERARETLKLHSRVWKNSPCNPPHLLASYPS 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 542463 543668 - BLOR20233 Blo08g00063 64015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00063 401 ProSiteProfiles U-box domain profile. 7 82 IPR003613 GO:0004842|GO:0016567
Blo08g00063 401 Gene3D - 81 384 IPR011989 -
Blo08g00063 401 SMART Ubox_2 11 75 IPR003613 GO:0004842|GO:0016567
Blo08g00063 401 PANTHER OS11G0573500 PROTEIN 2 400 - -
Blo08g00063 401 Pfam U-box domain 8 74 IPR003613 GO:0004842|GO:0016567
Blo08g00063 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 80 IPR013083 -
Blo08g00063 401 SUPERFAMILY RING/U-box 3 76 - -
Blo08g00063 401 CDD RING-Ubox_PUB 12 55 IPR045210 -
Blo08g00063 401 SUPERFAMILY ARM repeat 99 358 IPR016024 -
Blo08g00063 401 PANTHER WDSAM1 PROTEIN 2 400 IPR045185 GO:0061630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01301 Blo-Chr7:33251332 Blo08g00063 Blo-Chr8:542463 8.09E-158 dispersed
Blo08g00063 Blo-Chr8:542463 Blo14g00246 Blo-Chr14:2197355 0 dispersed
Blo13g00506 Blo-Chr13:26420366 Blo08g00063 Blo-Chr8:542463 1.13E-08 dispersed
Blo08g00062 Blo-Chr8:534531 Blo08g00063 Blo-Chr8:542463 2.72E-85 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00063 - - qsu:112009329 526.554