Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00066 ATGTCTCCGTCTGGGATCTTCTCGGCGCTCGTCTTTCTACTGGCTCTCTACTGCGGGACTGACCCTTTTAAGAGCAGCGTCATTTCGAATTTTCCAGATTTCGAGTCCGTCAAAGTGGATTTGTCTCCTTGGTCGGAGCTCCCTCCGGAGAAAGACGGAGGGAATTTGTTGCAGAAATCGGAAATTAAGTTTCGGAACCAAGTTCAGGGCCCTGAGAGTATGGCGTTCGACCCTCTTGGCCGAGGACCGTACACTGGCGTTGCTGATGGAAGAATTCTCTTCTGGAACGGAGAATCTTGGACCGATTTCGCTTACACTTCACCTAACAGATCAAGCTTATGTGATCCGAAACCATCACCATTGAGCTACTTGAAGAATGAACACATCTGTGGGAGGCCACTGGGTCTTCGGTTTGACAAGAAAACAGGCTATTTATACATTGCGGATGCTTATCTTGGACTGAAGAAGGTGTCGCCTGAAGGTGGTCTGGCTACAGCGCTTGCAACTGAGGCAGGAGGGGATCCATTGACGTTTACTAATGATCTTGACATTGATGATGAAGGGAATGTTTATTTTACTGATAGCAGCACAAAATACCAAAGAAGAAATTTCATGCAGCTGGTTTTCTCCGCTGAGAAGAGTGGGAGGCTTCTAAAGTACAATCCAATTACTGGGGAAACCACTGTTCTTCTGAGAAATCTTCAATTTCCTAATGGTGTGTCTCTGAGCAAGGATGGAACCTTCCTCATCTTCTGTGAAGGATCGACCGGCAGATTACTCAAGTACTGGTTGAAAGGAGAGAAAACAGGAAATTGGGAAGTATTTGCAATCCTGCCGGGATTTCCAGACAATGTGAGAACGAACGAGGAGGGTGAGTTCTGGGTGGCTATCCACTGTCGAAGATCCATTATAGCACATTATTTATCGCTATATCCGAGACTAAGAAAGTTCATTCTGAAGCTCCCAATCTCAGCCAAAATTCAGTTCTTGATGCATGTTGGTGGGTGGCCTCATGCAGTGGTGGTGAAGTACAGCCAGGATGGTAAGCTTTTACAGATATTGGAGGACAGTGAAGGGAAGGTTGTGAAAGCCGTAAGCGAGGTTGAAGAGAGAGATGGTAAGCTTTGGATTGGGAGTGTTCTTATGTCCTTTGTTGCAGGAGACATTAGAAAATGGTTCATGAAGTCACATGACAAAGGTAATGGTGATGCATCAAAGCCTGCAAAACCAGCGTCAGGCCCTTCAGAGAAACCTGCTTCAGCTAAGTTGCAGCCTGATAAATCAGTAGAGGAAACTCAAGGAGGTGTGAGCAGAAGGAAAACTAGCAAGTATTTTGCCGCAAAAAACCAAAAGGGTGAAAATGAAGAACAGAAGGAGGAACTTCTTACCAAAAGAAAGACGCAAGAGGATACTGAGAACTCAGAGAAAACTAAACCGTCTAAAAAAATTCACAAAGTTGACGTTGATGATGATGATGACCTTGTATTCTCTACGTCTTCAAGAAAAGATTTGGCTGGCACCACTCCAAACAAAAAGTTGAAGAGTGGCTCTGGTAAGGGAATTCCTCAGAAACCTATGAATGTTGAAGAAAGCGATGAGGATGAAGATAAAAACTCTGAATTACAAACAAAAAAATCTGGTGGAAGGGGACAGGGAGGCAGGGGTTCATCTGCGGCACCAGCTGGTGGAAGGGGTAGAGGCAGCGGACGTGGTGGGTTTATGAATTTTGGAGAAAGGAAAGATCCTCCGCACAAAGGGGAAAAGGAAGTCCCTGAAGGTGCTGCTGAATGTCTGGCGGGTTTAACTTTTGTGATCAGTGGAACCCTTGACAGTTTGGAACGAGAAGAGGCAGAAAATTTGATAAAACGCCATGGTGGTCGTGTAACTGGATCTGTCAGCAAGAAAACAAATTATCTTCTATGTGATGAAGATATTGAGGGCAGGAAATCTTCTAAAGCTAAAGAGCTGGGTACAGCTTTTCTCACAGAGGATGGATTATTTGATATTATTCGTGCATCGAATCGTTCAAAAGTACTTTCACAAGGAAAATCTCAGAGGTCAATGGACGAGGACATTAAATCTCTGCCAAGGAAAAGTCCTCAGAAAGTAGAATTGAAAAAGGGAATCAACAATTCGGTGGGTACAAATGTAACAGACAAAGGGTTTACTAAAGTTACATCCTCTGCTTTGGGTAAAAGTGAGAACATTGAACGATCTTCGCTAACATGGACGGACAAATATAGACCAAAGGTCCCAAATGACATTATTGGTAATCAGTCACTGGTCAAACAACTTCATGACTGGTTGGCGCACTGGAAAGAGAACTTTCTTGATATTGGAAACAAGAAAAAGGGAAAAAAAGTCAATGATTCTGGTAACAAAAAAGCTGTCTTATTGAGTGGAACACCTGGCATTGGGAAAACTACATCGGCAAAATTGGTTTGTCAGATGCTCGGTTTTCAAGCAATAGAGGTCAATGCGAGTGATAATCGTGGGAAAGCTGATGCTAAGATTGGAAAAGGAATTGGTGGAAGCAATGCAAATTCTGTCAAGGAACTCATTAACAATGTGGCTCTGAATGTCAGCATGGATTGGTCAAAACACCCAAAAACAGTGTTGATAATGGATGAGGTTGATGGAATGTCGGCTGGGGATAGGGGTGGAGTTGCTGATTTAATAGCAAGCATTAAAATTTCAAAAATTCCTATTATCTGCATATGTAATGACCGCTACAGCCAGAAACTGAAGAGTCTCATCAACTACTGTTTGCTTCTCAGCTTTCGGAAACCTACAAAACAACAGATGGCGAAGAGGTTGATGCAGGTTGCAAAAGCAGAAGGCCTTCAAGTTAACGAGATTGCTCTTGAAGAACTTGCAGAGAGAGTCAATGGTGATATGCGAATGGCAATTAACCAGTTGCAGTACATGAGTTTGTCTTTATCAGTTATTAAGTATGAAGATGTTCATCAGCGCCTTCTTAGCAGTGCAAAGGATGAAGATATCTCTCCATTCACTGCAGTTGACAAGTTGTTTAGTTTCAACTCTAGCAAGTTGAAGATGGATGAACGAATTGGCCTTAGTATGAGTGATCCTGATCTAGTGCCTCTCCTTGTTCAGGAAAATTATCTTAATTATAGATCAAATTTAGTTGGTAAGGACGACGATGGGATAAAACGCATGAACTGTATTGCTCGTGCTGCTGAATCCATTGCAGATGGGGATATAATTAATGTACAGATTCGAAGAAACCGCCAGTGGCAACTCTCTCAAAGTGCTACACTTGCTTCTTGTATAATCCCTGCTGCATTGTTGCATGGACAAAGGGAGACACTTGAACAGGGAGAACGCAATTTTAATAGATTTGGTGGATGGTTAGGAAAAAACTCAACAATGGGTAAAAATTTGAGGCTTTTGGAGGACTTACACGTTCACATTCTTGCTTCTCGTGAATCTAGTTCAGGAAGAGAAACCATACGAGTTGAGCAGCTAAGTCTTCTTCTGAAACAGTTGACAGAGCCACTTCGTGCACTGCCAAAGGATGAAGCTGTTCAAAAAGTTGTGGAATTTATGAATGACTACTCTATTAGTCAGGAGGATTACGACACTATTGTGGAATTGTCAAAATTTCGGGGACATCCAAATCCATTGGATGGCATACAACCGGCTGTCAAGGCAGCTTTAACAAGGGCATATAAAGAAGGAAGCAAGACACGAATGGTAAGAGCTGCAGATCTGATAACGCTTCCAGGAATAAAAAAGGCACCCAAGAAGCGGATTGCTGCAATTTTGGAGCCATCTGAGGAGGTGTTAGGAGATGGTGATGGTGATAAAGTGGATGATAGCGAAGAAGAGAGATCTTCAGACACTGAAAGCCTGGATGATGGCAGCAAAGGTGAGAAGCTGCAACAGGAACTTGAGAGTCTGAATTCGAAAGGAACGAAAGTTCAGTTGGATCTAAAGGGCAAAGTAAATTCGAACACCAAGAAGTCAGCGGGGAGAGGAAAAGGTGGTTCTGAAGCTTCTTCAGCCAAGAAAGGTGGGAGTGGGAGAGCGTCAGCACCCACTGCCAAAAGAAAGAGATGA 4083 43.2 MSPSGIFSALVFLLALYCGTDPFKSSVISNFPDFESVKVDLSPWSELPPEKDGGNLLQKSEIKFRNQVQGPESMAFDPLGRGPYTGVADGRILFWNGESWTDFAYTSPNRSSLCDPKPSPLSYLKNEHICGRPLGLRFDKKTGYLYIADAYLGLKKVSPEGGLATALATEAGGDPLTFTNDLDIDDEGNVYFTDSSTKYQRRNFMQLVFSAEKSGRLLKYNPITGETTVLLRNLQFPNGVSLSKDGTFLIFCEGSTGRLLKYWLKGEKTGNWEVFAILPGFPDNVRTNEEGEFWVAIHCRRSIIAHYLSLYPRLRKFILKLPISAKIQFLMHVGGWPHAVVVKYSQDGKLLQILEDSEGKVVKAVSEVEERDGKLWIGSVLMSFVAGDIRKWFMKSHDKGNGDASKPAKPASGPSEKPASAKLQPDKSVEETQGGVSRRKTSKYFAAKNQKGENEEQKEELLTKRKTQEDTENSEKTKPSKKIHKVDVDDDDDLVFSTSSRKDLAGTTPNKKLKSGSGKGIPQKPMNVEESDEDEDKNSELQTKKSGGRGQGGRGSSAAPAGGRGRGSGRGGFMNFGERKDPPHKGEKEVPEGAAECLAGLTFVISGTLDSLEREEAENLIKRHGGRVTGSVSKKTNYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDIIRASNRSKVLSQGKSQRSMDEDIKSLPRKSPQKVELKKGINNSVGTNVTDKGFTKVTSSALGKSENIERSSLTWTDKYRPKVPNDIIGNQSLVKQLHDWLAHWKENFLDIGNKKKGKKVNDSGNKKAVLLSGTPGIGKTTSAKLVCQMLGFQAIEVNASDNRGKADAKIGKGIGGSNANSVKELINNVALNVSMDWSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLINYCLLLSFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVNGDMRMAINQLQYMSLSLSVIKYEDVHQRLLSSAKDEDISPFTAVDKLFSFNSSKLKMDERIGLSMSDPDLVPLLVQENYLNYRSNLVGKDDDGIKRMNCIARAAESIADGDIINVQIRRNRQWQLSQSATLASCIIPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHVHILASRESSSGRETIRVEQLSLLLKQLTEPLRALPKDEAVQKVVEFMNDYSISQEDYDTIVELSKFRGHPNPLDGIQPAVKAALTRAYKEGSKTRMVRAADLITLPGIKKAPKKRIAAILEPSEEVLGDGDGDKVDDSEEERSSDTESLDDGSKGEKLQQELESLNSKGTKVQLDLKGKVNSNTKKSAGRGKGGSEASSAKKGGSGRASAPTAKRKR 1360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 636968 649932 + BLOR20236 Blo08g00066 64018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00066 1360 CDD BRCT_RFC1 593 671 - -
Blo08g00066 1360 Gene3D - 1002 1112 - -
Blo08g00066 1360 SMART AAA_5 793 931 IPR003593 -
Blo08g00066 1360 MobiDBLite consensus disorder prediction 398 591 - -
Blo08g00066 1360 Pfam ATPase family associated with various cellular activities (AAA) 797 908 IPR003959 GO:0005524|GO:0016887
Blo08g00066 1360 SUPERFAMILY post-AAA+ oligomerization domain-like 1001 1146 IPR008921 GO:0003677|GO:0006260
Blo08g00066 1360 Gene3D BRCT domain 570 672 IPR036420 -
Blo08g00066 1360 MobiDBLite consensus disorder prediction 577 591 - -
Blo08g00066 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 741 990 IPR027417 -
Blo08g00066 1360 SUPERFAMILY Calcium-dependent phosphotriesterase 47 392 - -
Blo08g00066 1360 MobiDBLite consensus disorder prediction 526 543 - -
Blo08g00066 1360 Pfam Replication factor RFC1 C terminal domain 1070 1232 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Blo08g00066 1360 Pfam BRCA1 C Terminus (BRCT) domain 597 670 IPR001357 -
Blo08g00066 1360 MobiDBLite consensus disorder prediction 1280 1301 - -
Blo08g00066 1360 SUPERFAMILY BRCT domain 594 673 IPR036420 -
Blo08g00066 1360 Pfam Strictosidine synthase 180 267 IPR018119 GO:0009058|GO:0016844
Blo08g00066 1360 SMART BRCT_7 595 673 IPR001357 -
Blo08g00066 1360 Pfam Strictosidine synthase-like, N-terminal 68 94 - -
Blo08g00066 1360 CDD AAA 790 893 - -
Blo08g00066 1360 Gene3D - 741 929 IPR027417 -
Blo08g00066 1360 Gene3D - 930 1000 - -
Blo08g00066 1360 ProSiteProfiles BRCT domain profile. 593 671 IPR001357 -
Blo08g00066 1360 MobiDBLite consensus disorder prediction 1264 1360 - -
Blo08g00066 1360 MobiDBLite consensus disorder prediction 1302 1332 - -
Blo08g00066 1360 MobiDBLite consensus disorder prediction 678 700 - -
Blo08g00066 1360 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 405 1330 - -
Blo08g00066 1360 PANTHER REPLICATION FACTOR C SUBUNIT 1 405 1330 - -
Blo08g00066 1360 MobiDBLite consensus disorder prediction 684 700 - -
Blo08g00066 1360 Gene3D - 55 397 IPR011042 -
Blo08g00066 1360 MobiDBLite consensus disorder prediction 500 514 - -
Blo08g00066 1360 MobiDBLite consensus disorder prediction 449 498 - -
Blo08g00066 1360 CDD HLD_clamp_RFC 930 990 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01022 Blo-Chr3:36525826 Blo08g00066 Blo-Chr8:636968 0 dispersed
Blo08g00066 Blo-Chr8:636968 Blo09g00372 Blo-Chr9:14497827 1.42E-94 dispersed
Blo02g00445 Blo-Chr2:6098413 Blo08g00066 Blo-Chr8:636968 3.95E-97 transposed
Blo16g00956 Blo-Chr16:37816935 Blo08g00066 Blo-Chr8:636968 4.92E-42 transposed
Blo03g01020 Blo-Chr3:36499345 Blo08g00066 Blo-Chr8:636968 2.19E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00066 K10754 - jre:109014000 1285.4