Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00103 ATGCAGCCAAAGCCTGAAAATGTAAATCGATTAGAATCAGATCTACATTCCATCCATCAAATCAGCAGTTATACTGAGCCATGGTGGCGGAGTATGGGGTATAATCCTATCTCTGCACAGATGATGGGGAGAAGCACTTCAATTCCAAACTCTTTGGAGCACACCGATGGTAATTCAAAGTCCAGTGATAATCAGTCAATGTCAGATAATGATCTGAATGAAGAAGATGATGGTACCTCTAAAAAAGATTTTTTTTACTCAGTTACAGCTTCTGGTTTTGGAAAAGAACAACAAAATTGTCAGCATGTTGTTCCCGCCATGCCCATGATGCACAGTGAATCTAACACCCAACCTCCTCAGCTAGAGCTTATCAGTCACTCAATTGCTTGTGCACCAAATCCATATCAGGATTCATATGTGGGTGGAATCATGGCCACTTATGGGCATCAGTCTCTGGTTTATCCTCCTTTTCTTGGAATGCCACATGCTAGAATGCCGTTGCCTCTTGAGATGGCACAAGAGCCTGTCTTTGTGAATGCCAAACAATACCAGGGGATTATAAGGCGAAGACAAGCTCGTGCTAAAGCCGAGGTCGAAAAGAAACTGATAAAAGTTAGAAAGGTACAAAGGGCCTTGTATTTGTTAGATATTTTAGGCTTTGTTGCATTGTGCGCTAATCTTTCTCGTTTACAGCCCTATCTTCATGAATCGCGCCACCAGCATGCAATGAGAAGGCCAAGAGGCAGCGGAGGACGTTTTGCCAAGAAAAACAAAATGGATACTTTGAACTGCCCTGCAGAAGAAAGGGGTACCACTTCTGGTTCTCCCCTCTTCACACTCTGCTAG 846 43.38 MQPKPENVNRLESDLHSIHQISSYTEPWWRSMGYNPISAQMMGRSTSIPNSLEHTDGNSKSSDNQSMSDNDLNEEDDGTSKKDFFYSVTASGFGKEQQNCQHVVPAMPMMHSESNTQPPQLELISHSIACAPNPYQDSYVGGIMATYGHQSLVYPPFLGMPHARMPLPLEMAQEPVFVNAKQYQGIIRRRQARAKAEVEKKLIKVRKVQRALYLLDILGFVALCANLSRLQPYLHESRHQHAMRRPRGSGGRFAKKNKMDTLNCPAEERGTTSGSPLFTLC 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1083191 1085941 + BLOR20273 Blo08g00103 64055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00103 281 Gene3D - 172 258 - -
Blo08g00103 281 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 38 207 IPR001289 GO:0003700|GO:0006355
Blo08g00103 281 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 231 264 IPR001289 GO:0003700|GO:0006355
Blo08g00103 281 ProSitePatterns NF-YA/HAP2 subunit signature. 177 197 IPR018362 GO:0003677|GO:0016602
Blo08g00103 281 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 38 207 - -
Blo08g00103 281 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 231 264 - -
Blo08g00103 281 ProSiteProfiles NF-YA/HAP2 family profile. 172 256 IPR001289 GO:0003700|GO:0006355
Blo08g00103 281 SMART cbf3 171 256 IPR001289 GO:0003700|GO:0006355
Blo08g00103 281 MobiDBLite consensus disorder prediction 47 68 - -
Blo08g00103 281 MobiDBLite consensus disorder prediction 47 80 - -
Blo08g00103 281 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 253 IPR001289 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo03g01379 Blo08g00103 CCT
Blo03g00980 Blo08g00103 CCT
Blo03g01379 Blo08g00103 ECH
Blo03g00980 Blo08g00103 ECH
Blo08g00103 Blo14g00284 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00103 Blo-Chr8:1083191 Blo08g00259 Blo-Chr8:3301451 6.72E-30 dispersed
Blo14g00284 Blo-Chr14:2845175 Blo08g00103 Blo-Chr8:1083191 7.04E-125 wgd
Blo03g01379 Blo-Chr3:40225072 Blo08g00103 Blo-Chr8:1083191 1.46E-81 wgd
Blo03g00980 Blo-Chr3:35958672 Blo08g00103 Blo-Chr8:1083191 1.93E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12712 PF02045 CBFB_NFYA 5.20E-25 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00103 K08064 - jre:108998712 314.309