Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00141 ATGCAACTGCACCCACGGCACTTCGGCCGCAACCTCCGGGATAATCTTGTGTCCAAGCTCATGAAAGATGTTGAGGGCACTTGCAGTGGCCGACATGGTTTTGTGGTGGCAATAACGGGTATTGAGAACATTGGGAAAGGGCTGATTCGTGATGGCACAGGATTTGTTACATTTCCAGTTAAGTATCAGTGTGTAGTATTCAGGCCCTTCAAAGGAGAAATCTTAGAGGCTGTTGTCACCATGGTAAACAAGATGGGGTTTTTCGCTGAGGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGACGATATGGAGTTTCAGTCAGGAGACATGCCAAACTACACTACCTCAGATGGATCAGTGAAGATTCAGAAAGATAGCGAGGTGCGATTAAAGATAATTGGCACTCGAGTGGATGCAACTGAAATTATCCGAGCAAATCCTGGACAAAGAATCGACAACATACGAAGAACCGAATCAACGTACCCTAATCGAGCTGCAAGGGGCTCTAAAACGAGACTCTTCGATCTTCGTAGCGCCGGGGTTGCCTTCGCAGAGAAGGGGATTGTCTTCGCAACGCAGGGGTTCACAGAGCAGGGTTCGTCTTCGCCCAGCCAGAGGTCGCTTCGCAGAGTCGGGCTTTGCTTCTGGGTGTCGTCGTCTTCATCTTCGTCGTCGCCTTCGTGCTTCGGAGAGGAGATTTTGAGCTGCTGCAGAGGAAGCTTTAGTCTTCTGGAGATTAGATATAAACGGCCAGTAAACGGAAGGTGTCAGATGAAAACACAGCATAGTACAAGATCTTCTCCGCTATGTTTTTGTGCTCTAGATGCGGATATGGAAGACTATGGATTCGAATACTCCGATGAGGAGCCTGAGGAGCAGGACGTTGATATTGAGAACCAATATTACAACTCTAAAGGGTTGGTCGAAACAGATCCTGAAGAAGCACTTGCAGGATTTTCTGAAGTGGTTCACATGGAACCTGAAAAGGCTGAGTGGGGTTTTAAAGCTTTGAAACAAACGGTGAAGCTTTATTATCGTCTAGGGAGGTACAAAGAGATGATGGAAGCTTATAGAGTGATGCTTACTTACATCAAATCAGCAGTGACACGTAATTATAGCGAAAAATGCATTAACAATATAATGGATTTTGTTTCTGGGTCAGCTAGTCAGAACTTTGGTCTCTTGCAAGAATTTTATCAAACTACTCTAAAAGCTCTTGAAGAGGCAAAAAATGAGCGACTTTGGTTCAAGACTAATCTAAAGCTCTGTAAGATCTGGTTTGATATAGGGGAATATGGACGGATGAATAAGATTTTGAAGGAACTTCATAAATCTTGTCAAAGAGAAGACGGTGCAGATGATCAAAAGAAAGGAAGTCAACTTCTAGAAGTATATGCAATCGAAATTCAAATGTATACAGAAACTAAAAATAACAAAAAGCTCAAGCAATTATACCAAAAGGCTCTTGCAATCAAGTCGGCCATTCCCCATCCACGGATCATGGGAATAATTCGTGAATGTGGGGGTAAGATGCACATGGCAGAGCGTCAGTGGGCAGAAGCAGCCACAGATTTCTTTGAAGCTTTTAAGAACTATGATGAAGCTGGCAATCAAAGACGTATTCAGTGCTTGAAATATTTAGTTTTGGCTAATATGCTTATGGAATCAGAAGTTAATCCTTTTGATGGTCAAGAGGCGAAGCCGTATAAAAACGACCCGGAAATTTTGGCTATGACAAATCTTATAGCAGCATATCAGAGGAATGAAATACTTGAATTTGAGAAAATTCTTAAGAGTAACAGAAGGACAATTATGGACGATCCATTCATCCGAAACTACATCGAAGACTTGTTGAAAAATGTTAGAACCCAAGTTCTGCTTAAGCTCATCAAGCCTTACACCAGAATCCGAATACCATTTATATCCCAGGAGCTTAATGTGCCAGAAAAAGACGTAGAACAGTTGTTGGTTTCTCTTATATTGGATAACCGCATTGACGGCCACATCGATCAAGTGAACCGGCTTCTAGAGCGCGGTGACAGGAAGCTTTATCATATCCACGTCCTTATGTTTACTTTCATTTCTTTCATAGGCTGTATCACCACCAAGGAGCTTGGAACTGTAATGCGATCTTTGGGTCAGAACCCAACTGAAGCAGAGTTGCAAGACATGATAAATGAAGTGGATGCTGATGGTAATGGAACTATTGATTTCCCAGAGTTCCTTAATCTGATGGCCAGGAAAATGAAGGACACAGACTCAGAGGAGGAACTGAAGGAAGCTTTTCGAGTTTTTGACAAGGACCAGAATGGCTTTATTTCTGCAGCTGAGCTTCGCCATGTGATGACGAATTTAGGTGAGAAGCTAACAGATGAAGAAGTTGATGAGATGATTCGTGAAGCTGATGTCGATGGTGACGGACAGATCAACTATGATGAATTTGTCAGAGTCATGATGGCCAAGAGCATCAGCAATGCCTCCATTGGCAGAAGAAATCTAGCTTCCTGTAGTACAGCCAACCCCATTGATGACTGCTGGAGGTGCGACTCTAATTGGGCGACTAACCGGAAGCGTCTCGCTGATTGTGCCATTGGCTTCGGCAAGCAGGCGATCGGCGGGAGAGACGGACAGATTTATGTCGTCACCGACCCAACTGACACAGACCTCATAAACCCTAAACCAGGCACCCTCCGTTACGCGGTCATACAAGACGAGCCCCTCTGGATCATCTTCAGCCGAGATATGGTCATCAAGCTAAAAGCAGAGCTCATCATGAACTCCTTCAAGACCATCGACGGCCGCGGAGTCAACGTCCACATAGCCGGCGGACCCTGCATTACGATTCAGTACGTGACGAACATCATAATTCACGGAATCAGCATTCACGATTGCAAGGTCGGAGGGAACACCTACGTGAGAGACTCGCCGGATCATTACGGCTGGCGGACGTTGTCAGACGGAGATGGTATTTCGATCTTCGGAGGAAGCCATGTTTGGGTGGACCATTGCTCTCTGTCTAACTGCAATGACGGTCTGATAGACGCTATTCGTGGGTCGACCGCCATAACCATATCTAACAATTACATGACCCATCACGGCAAAGTCATGCTCTTAGGCCACAGCGATTCCTACATACAAGACAAGAACATGCAAGTCACCATAGCTTTCAACCATTTCGGAGAAGGACTAATCCAGAGAATGCCAAGATGTAGACATGGGTATTTCCACGTCGTGAATAATGACTACACTCATTGGGTAATGTACGCCATCGGCGGTAGCGCAGCTCCGACGATCAACAGCCAAGGCAACAGATTTCTAGCCCCAAACGACGCTGACCACAAAGAGGTAACGAAGCACGAGAACACAGCAGAGAGAGAATGGAGCAAGTGGAATTGGAGATCTCAGGGAGATTTGATGTTAAACGGTGCATTTTTCACGGGATCTGGATCGGCCGGGTCCTCCAGCTACGCCAAGGCGTCGAGCGTGAGCGCAAGACCATCGTCGCTAAGCTTTGATTGTATGCAAGCTTTTTCATCACAACTGAAATGTGTTCTGGGTGGACCACAACTTGACCGATTGACAACCAAGGAGAAGGAATACAGCTTCTGGAGAAGTGATATTCCATTTTTATTGAAGGCCGAGGCCGAGGCCGAGATTGTAACAATGGCGGCAACGAAAGAGGAGAGTCTTTTGATTGATTCAGCTGGTTTGACATGA 3729 45.32 MQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIIRANPGQRIDNIRRTESTYPNRAARGSKTRLFDLRSAGVAFAEKGIVFATQGFTEQGSSSPSQRSLRRVGLCFWVSSSSSSSSPSCFGEEILSCCRGSFSLLEIRYKRPVNGRCQMKTQHSTRSSPLCFCALDADMEDYGFEYSDEEPEEQDVDIENQYYNSKGLVETDPEEALAGFSEVVHMEPEKAEWGFKALKQTVKLYYRLGRYKEMMEAYRVMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFGLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDIGEYGRMNKILKELHKSCQREDGADDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWAEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRRTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISQELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRKLYHIHVLMFTFISFIGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVRVMMAKSISNASIGRRNLASCSTANPIDDCWRCDSNWATNRKRLADCAIGFGKQAIGGRDGQIYVVTDPTDTDLINPKPGTLRYAVIQDEPLWIIFSRDMVIKLKAELIMNSFKTIDGRGVNVHIAGGPCITIQYVTNIIIHGISIHDCKVGGNTYVRDSPDHYGWRTLSDGDGISIFGGSHVWVDHCSLSNCNDGLIDAIRGSTAITISNNYMTHHGKVMLLGHSDSYIQDKNMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSAAPTINSQGNRFLAPNDADHKEVTKHENTAEREWSKWNWRSQGDLMLNGAFFTGSGSAGSSSYAKASSVSARPSSLSFDCMQAFSSQLKCVLGGPQLDRLTTKEKEYSFWRSDIPFLLKAEAEAEIVTMAATKEESLLIDSAGLT 1242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1477647 1502004 - BLOR20311 Blo08g00141 64093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00141 1242 Gene3D - 71 159 IPR012340 -
Blo08g00141 1242 CDD S1_RNAPII_Rpb7 71 146 - -
Blo08g00141 1242 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 616 697 - -
Blo08g00141 1242 Gene3D - 843 1183 IPR012334 -
Blo08g00141 1242 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 2 68 IPR036898 -
Blo08g00141 1242 SUPERFAMILY Winged helix DNA-binding domain 610 685 IPR036390 -
Blo08g00141 1242 SUPERFAMILY Nucleic acid-binding proteins 68 146 IPR012340 -
Blo08g00141 1242 Gene3D - 699 746 - -
Blo08g00141 1242 Pfam PCI domain 581 681 IPR000717 -
Blo08g00141 1242 Pfam EF-hand domain pair 702 751 IPR002048 GO:0005509
Blo08g00141 1242 ProSitePatterns EF-hand calcium-binding domain. 733 745 IPR018247 -
Blo08g00141 1242 PRINTS Pollen allergen Amb family signature 926 942 IPR018082 -
Blo08g00141 1242 PRINTS Pollen allergen Amb family signature 1134 1158 IPR018082 -
Blo08g00141 1242 PRINTS Pollen allergen Amb family signature 1092 1111 IPR018082 -
Blo08g00141 1242 PRINTS Pollen allergen Amb family signature 990 1011 IPR018082 -
Blo08g00141 1242 PRINTS Pollen allergen Amb family signature 866 883 IPR018082 -
Blo08g00141 1242 PRINTS Pollen allergen Amb family signature 890 915 IPR018082 -
Blo08g00141 1242 PRINTS Pollen allergen Amb family signature 1070 1089 IPR018082 -
Blo08g00141 1242 SMART efh_1 761 789 IPR002048 GO:0005509
Blo08g00141 1242 SMART efh_1 797 825 IPR002048 GO:0005509
Blo08g00141 1242 SMART efh_1 724 752 IPR002048 GO:0005509
Blo08g00141 1242 Pfam S1 RNA binding domain 68 147 IPR003029 GO:0003676
Blo08g00141 1242 ProSitePatterns EF-hand calcium-binding domain. 770 782 IPR018247 -
Blo08g00141 1242 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 2 54 IPR005576 GO:0006351
Blo08g00141 1242 Pfam EF-hand domain pair 759 822 IPR002048 GO:0005509
Blo08g00141 1242 SMART amb_all 918 1115 IPR002022 -
Blo08g00141 1242 Gene3D - 747 838 - -
Blo08g00141 1242 CDD RNAP_II_Rpb7_N 1 71 - -
Blo08g00141 1242 Gene3D - 1 70 IPR036898 -
Blo08g00141 1242 Pfam Pectate lyase 928 1109 IPR002022 -
Blo08g00141 1242 ProSitePatterns EF-hand calcium-binding domain. 806 818 IPR018247 -
Blo08g00141 1242 ProSiteProfiles EF-hand calcium-binding domain profile. 793 828 IPR002048 GO:0005509
Blo08g00141 1242 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 279 686 - -
Blo08g00141 1242 Gene3D - 329 684 - -
Blo08g00141 1242 ProSiteProfiles EF-hand calcium-binding domain profile. 720 755 IPR002048 GO:0005509
Blo08g00141 1242 SUPERFAMILY EF-hand 702 824 IPR011992 -
Blo08g00141 1242 CDD EFh 702 750 IPR002048 GO:0005509
Blo08g00141 1242 ProSiteProfiles EF-hand calcium-binding domain profile. 757 792 IPR002048 GO:0005509
Blo08g00141 1242 SMART PINT_4 616 697 IPR000717 -
Blo08g00141 1242 CDD EFh 761 823 IPR002048 GO:0005509
Blo08g00141 1242 PANTHER - 279 686 - -
Blo08g00141 1242 ProSiteProfiles PCI domain profile. 518 687 IPR000717 -
Blo08g00141 1242 SUPERFAMILY Pectin lyase-like 828 1162 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo08g00141 Blo14g00306 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01194 Blo-Chr7:31807133 Blo08g00141 Blo-Chr8:1477647 3.25E-65 dispersed
Blo08g00141 Blo-Chr8:1477647 Blo14g00307 Blo-Chr14:3143618 0 dispersed
Blo16g01102 Blo-Chr16:39522729 Blo08g00141 Blo-Chr8:1477647 9.22E-18 dispersed
Blo01g00098 Blo-Chr1:1400427 Blo08g00141 Blo-Chr8:1477647 3.02E-16 transposed
Blo05g00389 Blo-Chr5:4777464 Blo08g00141 Blo-Chr8:1477647 7.63E-08 transposed
Blo06g00583 Blo-Chr6:28510491 Blo08g00141 Blo-Chr8:1477647 2.60E-97 transposed
Blo12g00644 Blo-Chr12:24791886 Blo08g00141 Blo-Chr8:1477647 3.29E-75 transposed
Blo14g00308 Blo-Chr14:3165288 Blo08g00141 Blo-Chr8:1477647 4.21E-69 transposed
Blo14g00306 Blo-Chr14:3136127 Blo08g00141 Blo-Chr8:1477647 6.94E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00141 K12176 - tcc:18590052 790.415