Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00173 ATGGCAGAGGACTTTCAGGCCAGGATTGGCGCAAGTACCTGGAGGAATTTATCAAAAACTGCGTTTTCCGGCGGTTCTCCGCCATGTTTAACGGGATATAGCGATATGGGTAGCTATGGGTGGTCAGCTACTGATGTGGTGGATATTAAAGGAATGTTTTATGAGGAGCCTAATTCGGTTTCTGGCATCTCCTTTGATTTCCCAAGTGTTCAAAAAGCTCATATACTGGATTCAGCTACTGGAGGTGGAAGTATATTGATTGATTCTGATAGCCCGACGGTGGGTTTCAGTCTTTCTTCTTCACCAACTTCAGATTGGAATCAAATTTTACTAAGTCGTGGAGATGGAAGAACTGAGAGCACTTTGAAATCGTTGTTTCTAGAAGACATGGATACAAACGTGAGTTATCAACAAGAAGAACCGATCAGAATCGACCACCGTCGATCTCCAAGAATCCGAAAAGATTGGAGCCCTAACGATTTTTCGACCATCGTTGAAGATGATAACTCCATAGCCAATAATACCTTCAAGTCCGTTGATCAAGATTTTTACACTTCCGAAGGGTGCCTGAACTCCAATATTTCCTCAGGCAACGAACATAATTTTTCTGCCGGCTTTCCCGTTGGATCGGTTTCGTACGGGCAGGCTTCGACGTTATTGCAAACTTTATTAAATTCTCAAACACAGCAATCGTCGTTTCTAGCAAATAACAGGTCCAATAACTCTTCATTTTCAGCTAATTTTGGATTGAATTGTGACGAATTATCATCAGCTTGGCCTAAAGTTGCTTCCAGCTACCAAAAACCATCAATATCGCAGCACCAAAATGTCGGCTTGTGCTTCTCCAAGAACACACCCTTCTGGAATTCTTCATGTTCAGCAGTGAAGGACAGTAGAGCCGTTCTTTGTCCTTCCTCACAGTCCCAACTCATGGCCTCCTCACTTGCTGAGAAACCCAAGTGCCACAACCTCACAACAAAGAAACTTCAGCTTTATGCTGGTGAAGATGTTCAACAGTCAGGATTAATCGCGAAGAGATTGAATGGAGGAGGAGGTGACTTGGCATTCAAAAGACCTCGAATCGAAACGCCTTCTCCACTTCCAACTTTTAAGGTAAGGAAGGAGAAGCTGGGGGACCGAATAACTGCCCTCCAACAACTGGTTTCGCCTTTCGGAAAGACTGACACTGCATCAGTGCTGCATGAAGCTATTGACTATATCAAGTTTCTCCATGAACAAGTCAGTGTATGTCTCGTTGTTTTGAGCACTCCATACATGAAAAGTGGAGCTTCCGATCACCATCAAAAGGAGCCAGAAGAGGCAACACAAGAGCTGAGGAATCGAGGACTTTGTTTGGTACCGATTTCAAGCACATTCGCTGCAGCTAGTGAGACCACGCCTGAGTTTTGGACGCCAACATTTGGAGCAACTTTCAAGTGA 1440 44.24 MAEDFQARIGASTWRNLSKTAFSGGSPPCLTGYSDMGSYGWSATDVVDIKGMFYEEPNSVSGISFDFPSVQKAHILDSATGGGSILIDSDSPTVGFSLSSSPTSDWNQILLSRGDGRTESTLKSLFLEDMDTNVSYQQEEPIRIDHRRSPRIRKDWSPNDFSTIVEDDNSIANNTFKSVDQDFYTSEGCLNSNISSGNEHNFSAGFPVGSVSYGQASTLLQTLLNSQTQQSSFLANNRSNNSSFSANFGLNCDELSSAWPKVASSYQKPSISQHQNVGLCFSKNTPFWNSSCSAVKDSRAVLCPSSQSQLMASSLAEKPKCHNLTTKKLQLYAGEDVQQSGLIAKRLNGGGGDLAFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIDYIKFLHEQVSVCLVVLSTPYMKSGASDHHQKEPEEATQELRNRGLCLVPISSTFAAASETTPEFWTPTFGATFK 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1956793 1958855 + BLOR20343 Blo08g00173 64125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00173 479 PANTHER TRANSCRIPTION FACTOR BHLH114 95 464 - -
Blo08g00173 479 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 371 419 IPR036638 GO:0046983
Blo08g00173 479 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 361 410 IPR011598 GO:0046983
Blo08g00173 479 Gene3D - 371 418 IPR036638 GO:0046983
Blo08g00173 479 CDD bHLH_AtbHLH_like 367 416 IPR045239 -
Blo08g00173 479 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 95 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00173 Blo-Chr8:1956793 Blo10g00790 Blo-Chr10:24684741 3.83E-62 dispersed
Blo01g00822 Blo-Chr1:12901380 Blo08g00173 Blo-Chr8:1956793 9.83E-11 wgd
Blo14g00345 Blo-Chr14:3756779 Blo08g00173 Blo-Chr8:1956793 1.11E-165 wgd
Blo07g00930 Blo-Chr7:28463596 Blo08g00173 Blo-Chr8:1956793 2.93E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00173 - - vvi:100264251 411.379