Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00174 ATGGCGATGCAGGTGCCGCATGATTTCAAGTGTCCGATTTCGCTGGAGATAATGACTGACCCGGTTATACTTCCATCGGGTTGTACCTTTGATCGGGCCTCTATCCAGCGGTGGCTCGACGATGGCCACCGGAATTGTCCTGTAACTCTTCTTCCCCTCCCTCAATGTACTACGCTCATCCCCAACCACGCTCTCAGAAGCTTAATTTCAAACTATACCACCCTCTCGCCGCCCAAACAACCATCTCGTCCCGAGCCCCAATCCCTAATCTCCGCCCTAACTGCCCCGTCTTCTTCGGTGCAAGCTAAACTCGATTCGCTGAACCAACTAGCAAGGTCGTCGAAGCGCGAATCTGTATTTCGTAGGAAGTTGATGGAGTTGGGTGTCGTCTCGCCGGTTCTTAAATGTGCTGGCTCCTGCGATGTAGGTCTACAAGAGAAAGCGCTCGCGTTATTGCTGAATCTTAGTCTAGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGTGCAATTGGTTTTATCGTCGCTGCTCTACTCGGTGGCTCGTCGGATTGCCGAGCCGTAGCAGCGACGATTCTGACAAGCTTGGCAGTCGTGGAGGTCAATAAGGTCACAATTGGAGAATACCCACATGCAGTTCGAGCTTTAGTTTCGCTTCTACGGGAAGGTAGAGGCCGAGAGAAGAAAGAAGCGGCGACGGCACTTTATGCCATCTGTTCATTCCCGGAGAATCGGCTGCGCGCGGTGAGATGTGGTGCTGTCCCGATTCTGATTCGAATTGCGGATTCTGGTCTTGAAAGGGCGATCGAAGTTTTGGGACATTTAGCAAAATGCAAGGAAGGTCGAGAAGAGATGCAGAGATTGGAGGGATGCTTGAAAATCTTCGTGCGGGTGTTGAGAAATGGAAGTTCAAGAGGAGTTCAATATGCTCTTCTAACTCTAACTTCTATCTGTTGTCATTGCGATCGAATGTGTTTGGAAGCTAGGAGAGAAGGAGCTTTGGATATGGCCATGGCTTTAGTTGACGATGACAATGAAAAGATTAGGAGAAATGCTTCAAATTTAATACGGGTTCTGCAAGAGAGCGATTTTACGAGCTACTATTCCATGTATGGACATGTTGCGAAGCTGGCTGATGAGATAGTGAAAGGAGCTTCATCAGTTGAAGGAGTAGAAGTAAAACTATGGCAGGTACCTGAGACGCTGAATGAAGAGGTTCTTGGTAAGATGCATGCACCGCCAAAGCTTGACGTTCCAATCATTACGCCAGACGAACTTGCAGGGGCCGATGGCCTACTATTTGGTTTTCCGACGAGATTTGGAATGATGTGTTCTCAGTTCAAAGCATTTTTTGATGTAACTGGTGGGTTATGGAGAACACAATCCTTAGCCGGAAAGCCTGCCGGAATTTTCTACAGCACTAGTTCTCAAGGAGGTGGACAAGAGACTACCCCATTGACGGCTATTACACAGCTGGTTCACCATGGGATGATCTTCGTCCCCATCGGATATACGTTCGGAGCAGGAATGTTTGAGTTAGAGGCAATCAAAGGAGGTAGCCCTTATGGAGCTGGGACTTTCGCCGGTGATGGTTCGAGACAGCCGTCTGCGCTTGAGTTGGAGCAAGCTTTTCACCAGGGCAAGTACTTTGCTGGAATTGCAAAGAAGTTGAAAGGGTCTGCCTGA 1686 48.81 MAMQVPHDFKCPISLEIMTDPVILPSGCTFDRASIQRWLDDGHRNCPVTLLPLPQCTTLIPNHALRSLISNYTTLSPPKQPSRPEPQSLISALTAPSSSVQAKLDSLNQLARSSKRESVFRRKLMELGVVSPVLKCAGSCDVGLQEKALALLLNLSLDDDNKVGLVAEGAIGFIVAALLGGSSDCRAVAATILTSLAVVEVNKVTIGEYPHAVRALVSLLREGRGREKKEAATALYAICSFPENRLRAVRCGAVPILIRIADSGLERAIEVLGHLAKCKEGREEMQRLEGCLKIFVRVLRNGSSRGVQYALLTLTSICCHCDRMCLEARREGALDMAMALVDDDNEKIRRNASNLIRVLQESDFTSYYSMYGHVAKLADEIVKGASSVEGVEVKLWQVPETLNEEVLGKMHAPPKLDVPIITPDELAGADGLLFGFPTRFGMMCSQFKAFFDVTGGLWRTQSLAGKPAGIFYSTSSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMFELEAIKGGSPYGAGTFAGDGSRQPSALELEQAFHQGKYFAGIAKKLKGSA 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1962405 1966694 - BLOR20344 Blo08g00174 64126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00174 561 Gene3D - 366 559 IPR029039 -
Blo08g00174 561 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Blo08g00174 561 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Blo08g00174 561 Pfam U-box domain 5 73 IPR003613 GO:0004842|GO:0016567
Blo08g00174 561 ProSiteProfiles Flavodoxin-like domain profile. 363 550 IPR008254 GO:0010181
Blo08g00174 561 SUPERFAMILY Flavoproteins 367 558 IPR029039 -
Blo08g00174 561 Pfam NADPH-dependent FMN reductase 376 502 IPR005025 GO:0016491
Blo08g00174 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Blo08g00174 561 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Blo08g00174 561 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Blo08g00174 561 CDD RING-Ubox_PUB 9 49 IPR045210 -
Blo08g00174 561 Gene3D - 266 365 IPR011989 -
Blo08g00174 561 Gene3D - 86 265 IPR011989 -
Blo08g00174 561 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Blo08g00174 561 SMART arm_5 321 361 IPR000225 GO:0005515
Blo08g00174 561 SMART arm_5 241 277 IPR000225 GO:0005515
Blo08g00174 561 SMART arm_5 158 198 IPR000225 GO:0005515
Blo08g00174 561 SMART arm_5 116 157 IPR000225 GO:0005515
Blo08g00174 561 SMART arm_5 278 319 IPR000225 GO:0005515
Blo08g00174 561 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 367 557 IPR010089 GO:0003955|GO:0010181
Blo08g00174 561 SUPERFAMILY RING/U-box 3 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00174 Blo-Chr8:1962405 Blo10g00789 Blo-Chr10:24669237 2.77E-116 dispersed
Blo14g00346 Blo-Chr14:3762940 Blo08g00174 Blo-Chr8:1962405 2.17E-106 wgd
Blo07g00931 Blo-Chr7:28487874 Blo08g00174 Blo-Chr8:1962405 3.43E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00174 - - zju:107421885 520.776