Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00183 ATGGCGTCTGCTGCTGCCCCCGCTGGCCCGTCTTCCTCATCGTCGATGAAGGTTTGTTATAACTCTGACTGCAAGGAATTGAAACCGGAGAGGTCGAGGAAAGGTTGGCGTCTTCAGACTGGCGAGTTTGCGGAGCTCTGTGATCGATGCGGTTGTGCTTATGAAGAAGGAAGATTCTGTGAAACTTTCCACTTAAATGCTACTGGTTGGAGATGCTGTGAGTCGTGTGGGAAGCGTGTTCATTGTGGATGTATTGTCTCGGCTCATGGATTTTCTTTACTGGATCCTGGAGGTATCGAGTGCATGGTGTGTTCAAGGAAGAACTCCATTATGACTCCACATCCAATGTGGTCGCCTTCTATGTTTTTCCATTCGTCTTTCCCAGACAGACTCAAAGACCTATCTGTGAAGAATTGGAGTCAATTGGCTGGATCAGGGCCTGTACCATGGCGACAAGCTCCAAGTCTATTCAATTCTTCTCTTGCTACACCTGAAATGCATTCTAGGATTCCATATGAAGTTGACATGGCAACTGGAATTGGCAAACCTAGTTCCATTGAAAAACCATCTACTCCTTGTTTTGAGAGACAGAAAAATGAGGATTTTTCTGAACGATTCTTGAATGGAAACCTGAAGCATGGTCCACGGGATATATGTGAGAGTGGGAATGCAGGCACGTTAACTAATTTTGTTATTGTTACAGGGATCAAACGCGAAGAGCAATACAATTCGTGTTCTAACCCAATACAACATTCTATTTCCTTGAAGGAGGATTCATCTATCCCACCATTTGGTTTAAATATTCCGTATGCATCTCCGAATGATAAAAGTTGTCAAAATGGAGTTTCTGGAACTCATTTAAGACCAACTCATCCACCTCCTCATGCCAAACAGTTGAATAGCATTCATAGCAGTTTACAAAACGGAACTGATTTACCTAATGAAAATAATATTCGTAATGGAAGGTCTCGAGCAGATCAACGAGGAAGAAATTATTTACTTCCAAGATATTGGCCTCGATTTACTGATCAAGAGCTACAGCAAATATCTGCTGATTCAAACTCTGTGATTACTCCTTTATTTGAGAAAATGTTAAGTGCTAGTGATGCTGGGCGGATTGGGCGGTTAGTACTTCCAAAAAAATGTGCAGAGGCTTATTTTCCATCAATCTCCCAACCGGAAGGATTACCTTTGAAAGTCCAGGATGCAAAAGGAAAGGAGTGGATATTTCAATTTCGCTTCTGGCCCAATAATAATAGTAGGATGTATGTTCTTGAAGGTGTTACTCCTTGCATACAAGCCATGCAATTGCAAGCAGGCGATATAGTAACGTTTAGTCGATTAGAGCCAGAAGGGAAGTTGGTTATGGGGTTCAGAAGGGCTACAACAGCACCTGATCAGGAGAATGAAATAAATAAGACTCTCAACGGAGTTCCTACCCATGGAGACGCTGACATGGTGGAGCCAAATTCATGGACGAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGTCTTGGGAGCAAAGCCTCTTGTTGCTAGAAAGAGGAAAAATAGCACACCAGGTTCAAAGACTAAACGACTTAAAATTGAAAGTGAGGACATTATAGAACTGAAGTTGACTTGGGAAGAAGCTCAAGGATTGCTCCGTCCCCCTTCTAACCATGTTCCCAGTATTGTGGTGATTGAAGGCTTTGAGTTTGAGGAATATGAGGATGCTCCAATAATTGGGAGGCCAACCATTATAACTTCTGATAATACATGCAATAAAGCTAAACTGGCAGACTTTCTGCATGTAATTATTCTTAAAATCTTCTTTACGCTGCCTGGTAGATCCATTTGTTCCGCCGCCCAAGAACTGACTACAGAACAGCTTGAAGAAATGCTAGCCCCCAGTTACTCGGCTCCTAAGAAAATGAAGGCTGCCAAACAAGAACCAGAACAGGTCGAGGCTTTAGAGGGGCTTGACGCTCTTGCAAACCTAGCTATATTGGGCGAGGGCGATTCAGTCCAGGCATCTTCACAGGCCACTACAAAGCACCCTCGCCATAGACCTGGCTGCTCTTGCATTGTCTGCATCCAACCTCCGAGCGGTAAGGGCCCCAAACATAAGCAAACATGTACATGTATTGTCTGCCTGACAGTAAAACGTAGATTCAGAACTCTAATGCTTCGCCGAGAAAGAAAACAGACAGAGCGGGAAGCAGAAACCACCCGCAAAAAGCAGCAACTATCAGTGCCTGAAGTGGATGATGAAATTCTGGAAAGTAGTAGTAGTAGACTGGTGGAGAAGGAGATGAATGATTGTTCTGATGATGATCCGACCAAGAAAAGAGCATCAACATCACCTTTTAAAGGACAAATTGATTTGAATATCCAACCGGAAAGAGAGGAAGAGCTGTCTCCTGGTTCGGACTCCGGCACCGTGATGAAGTTGCTCCAAGATGCATCCGAGAGGAGTCTCGGGCCGCCAAAAGTATCCGGCTCTGATGGAAGTATATCAAGCAATCCAGCGGAGCCTAGTGGAGGTGGAGCTCCGGCTGAAATTAGTAATAATAATGGCGTCGACCTCAGCAATAATTGTGAAGAAGATGACAAAGAACTTCCAGCAACTTTTACAAACATTTTGGCGTCCATGTCAGCCACTGGGTTGAAGTTATCTGCATCTTCCTCCTGGAGCTTGCTCACCTTCTACCACTGGCAAAGGAGAAAAGACACGAGAGTATTTTCTCGATCTGCACAAGCTGGCAAGGATCAAAACTCGGGCAAGATGAACGATCTGTTCTCTAACTCTTTCAAAAAATACGCAGACCTGAAGCAGCAGGCCTACGAAGACGGAATGGAGGCAGGAAACGAGACGGTAAATCTCGATAAGTTTTTTGAAGACGTTGAGAATGTGAAGGAAGACATGAGACAGGTGGAAAAGCTCTACAAGAAACTACAAGAAGCAAATGAAGAAAGCAAAGTAGTCCACAACGCAAAAACCATGAAGGAATTGAGAGCAAGAATGGATCAAGATGTCAGCCAGGTCTTAAGAAGAGTCAAAGTGATCAAAGGAAAGCTCGAAGCTCTCGATCGATCAAACGCATCCCATCGAAGCCTTCCCGGGTGCGGACCCGGTTCGTCTGCGGATAGAACAAGAACCTCAGTGGTGAGTGGATTGGGGAAGAAACTTAAAGACACCATGGATGATTTTCAGAGCTTAAGATCTAGAATGAATGCAGAATACAAAGAAACAGTAGAACGCAGGTATTTCACAATCACAGGAGAGAAGGCAAATGAAGAAACAATCGAGAATCTGATATCGAGCGGAGAAAGCGAAAATTTTCTGCAGAAAGCGATTCAAGAACAGGGTAGAGGCCAAATAATGGACACAATATCAGAAATACAAGAAAGGCACGATGCAGTGAAGGAGATAGAGAAGAACCTGATTGAGCTGCACCAGATATTTCTTGACATGGCTGCACTTGTGGAGGCGCAGGGGCATCAGCTCAACGACATAGAGAGTCACGTTGCACATGCTAATTCGTTTGTCCGGCGAGGCACTGAGCAGCTGCAGGAGGCCAGAGAACATCAGAAAAGCTCGAGGAAATGGACGTGCATTGCTGTAGTTCTCGGCGCAGTTCTCGTTGCCGTTCTGCTCTTCCCGCTTTTGACGTCGATTTTCCCCCATTTGATGTAG 3681 44.5 MASAAAPAGPSSSSSMKVCYNSDCKELKPERSRKGWRLQTGEFAELCDRCGCAYEEGRFCETFHLNATGWRCCESCGKRVHCGCIVSAHGFSLLDPGGIECMVCSRKNSIMTPHPMWSPSMFFHSSFPDRLKDLSVKNWSQLAGSGPVPWRQAPSLFNSSLATPEMHSRIPYEVDMATGIGKPSSIEKPSTPCFERQKNEDFSERFLNGNLKHGPRDICESGNAGTLTNFVIVTGIKREEQYNSCSNPIQHSISLKEDSSIPPFGLNIPYASPNDKSCQNGVSGTHLRPTHPPPHAKQLNSIHSSLQNGTDLPNENNIRNGRSRADQRGRNYLLPRYWPRFTDQELQQISADSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPSISQPEGLPLKVQDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQAMQLQAGDIVTFSRLEPEGKLVMGFRRATTAPDQENEINKTLNGVPTHGDADMVEPNSWTKVDKSGYIAKEVLGAKPLVARKRKNSTPGSKTKRLKIESEDIIELKLTWEEAQGLLRPPSNHVPSIVVIEGFEFEEYEDAPIIGRPTIITSDNTCNKAKLADFLHVIILKIFFTLPGRSICSAAQELTTEQLEEMLAPSYSAPKKMKAAKQEPEQVEALEGLDALANLAILGEGDSVQASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCIVCLTVKRRFRTLMLRRERKQTEREAETTRKKQQLSVPEVDDEILESSSSRLVEKEMNDCSDDDPTKKRASTSPFKGQIDLNIQPEREEELSPGSDSGTVMKLLQDASERSLGPPKVSGSDGSISSNPAEPSGGGAPAEISNNNGVDLSNNCEEDDKELPATFTNILASMSATGLKLSASSSWSLLTFYHWQRRKDTRVFSRSAQAGKDQNSGKMNDLFSNSFKKYADLKQQAYEDGMEAGNETVNLDKFFEDVENVKEDMRQVEKLYKKLQEANEESKVVHNAKTMKELRARMDQDVSQVLRRVKVIKGKLEALDRSNASHRSLPGCGPGSSADRTRTSVVSGLGKKLKDTMDDFQSLRSRMNAEYKETVERRYFTITGEKANEETIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREHQKSSRKWTCIAVVLGAVLVAVLLFPLLTSIFPHLM 1226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2085505 2099590 + BLOR20353 Blo08g00183 64135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00183 1226 Gene3D - 956 1083 - -
Blo08g00183 1226 Pfam Syntaxin 958 1161 IPR006011 GO:0016020
Blo08g00183 1226 MobiDBLite consensus disorder prediction 1029 1050 - -
Blo08g00183 1226 MobiDBLite consensus disorder prediction 275 326 - -
Blo08g00183 1226 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 14 807 - -
Blo08g00183 1226 SMART B3_2 361 462 IPR003340 GO:0003677
Blo08g00183 1226 MobiDBLite consensus disorder prediction 725 860 - -
Blo08g00183 1226 CDD B3_DNA 359 460 IPR003340 GO:0003677
Blo08g00183 1226 Pfam SNARE domain 1163 1214 IPR000727 -
Blo08g00183 1226 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 14 807 - -
Blo08g00183 1226 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 1126 1188 IPR000727 -
Blo08g00183 1226 ProSitePatterns Syntaxin / epimorphin family signature. 1132 1171 IPR006012 GO:0005484|GO:0006886|GO:0016020
Blo08g00183 1226 Pfam B3 DNA binding domain 361 461 IPR003340 GO:0003677
Blo08g00183 1226 SMART SynN_4 951 1077 IPR006011 GO:0016020
Blo08g00183 1226 Gene3D - 1119 1219 - -
Blo08g00183 1226 Gene3D - 339 466 IPR015300 -
Blo08g00183 1226 Coils Coil 956 993 - -
Blo08g00183 1226 MobiDBLite consensus disorder prediction 725 779 - -
Blo08g00183 1226 SUPERFAMILY DNA-binding pseudobarrel domain 358 461 IPR015300 -
Blo08g00183 1226 SUPERFAMILY t-snare proteins 955 1181 IPR010989 GO:0016020|GO:0016192
Blo08g00183 1226 CDD SynN 956 1113 IPR006011 GO:0016020
Blo08g00183 1226 MobiDBLite consensus disorder prediction 297 320 - -
Blo08g00183 1226 CDD SNARE_syntaxin1-like 1125 1187 - -
Blo08g00183 1226 SMART tSNARE_6 1121 1188 IPR000727 -
Blo08g00183 1226 ProSiteProfiles B3 DNA-binding domain profile. 361 462 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01197 Blo-Chr3:38216882 Blo08g00183 Blo-Chr8:2085505 1.26E-162 dispersed
Blo04g00912 Blo-Chr4:10701857 Blo08g00183 Blo-Chr8:2085505 3.16E-51 dispersed
Blo08g00183 Blo-Chr8:2085505 Blo09g00301 Blo-Chr9:12804074 6.49E-25 dispersed
Blo10g00609 Blo-Chr10:18598301 Blo08g00183 Blo-Chr8:2085505 1.97E-16 dispersed
Blo16g00051 Blo-Chr16:1903083 Blo08g00183 Blo-Chr8:2085505 1.12E-45 dispersed
Blo18g00545 Blo-Chr18:7632504 Blo08g00183 Blo-Chr8:2085505 1.58E-17 dispersed
Blo19g00130 Blo-Chr19:3745824 Blo08g00183 Blo-Chr8:2085505 2.05E-16 dispersed
Blo14g00365 Blo-Chr14:3972538 Blo08g00183 Blo-Chr8:2085505 0 transposed
Blo15g00503 Blo-Chr15:8565426 Blo08g00183 Blo-Chr8:2085505 8.50E-69 transposed
Blo14g00364 Blo-Chr14:3958679 Blo08g00183 Blo-Chr8:2085505 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12717 PF00804 Syntaxin 6.50E-73 CL0445 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00183 - - csv:101209415 1175.61