Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00183 ATGGCGTCTGCTGCTGCCCCCGCTGGCCCGTCTTCCTCATCGTCGATGAAGGTTTGTTATAACTCTGACTGCAAGGAATTGAAACCGGAGAGGTCGAGGAAAGGTTGGCGTCTTCAGACTGGCGAGTTTGCGGAGCTCTGTGATCGATGCGGTTGTGCTTATGAAGAAGGAAGATTCTGTGAAACTTTCCACTTAAATGCTACTGGTTGGAGATGCTGTGAGTCGTGTGGGAAGCGTGTTCATTGTGGATGTATTGTCTCGGCTCATGGATTTTCTTTACTGGATCCTGGAGGTATCGAGTGCATGGTGTGTTCAAGGAAGAACTCCATTATGACTCCACATCCAATGTGGTCGCCTTCTATGTTTTTCCATTCGTCTTTCCCAGACAGACTCAAAGACCTATCTGTGAAGAATTGGAGTCAATTGGCTGGATCAGGGCCTGTACCATGGCGACAAGCTCCAAGTCTATTCAATTCTTCTCTTGCTACACCTGAAATGCATTCTAGGATTCCATATGAAGTTGACATGGCAACTGGAATTGGCAAACCTAGTTCCATTGAAAAACCATCTACTCCTTGTTTTGAGAGACAGAAAAATGAGGATTTTTCTGAACGATTCTTGAATGGAAACCTGAAGCATGGTCCACGGGATATATGTGAGAGTGGGAATGCAGGCACGTTAACTAATTTTGTTATTGTTACAGGGATCAAACGCGAAGAGCAATACAATTCGTGTTCTAACCCAATACAACATTCTATTTCCTTGAAGGAGGATTCATCTATCCCACCATTTGGTTTAAATATTCCGTATGCATCTCCGAATGATAAAAGTTGTCAAAATGGAGTTTCTGGAACTCATTTAAGACCAACTCATCCACCTCCTCATGCCAAACAGTTGAATAGCATTCATAGCAGTTTACAAAACGGAACTGATTTACCTAATGAAAATAATATTCGTAATGGAAGGTCTCGAGCAGATCAACGAGGAAGAAATTATTTACTTCCAAGATATTGGCCTCGATTTACTGATCAAGAGCTACAGCAAATATCTGCTGATTCAAACTCTGTGATTACTCCTTTATTTGAGAAAATGTTAAGTGCTAGTGATGCTGGGCGGATTGGGCGGTTAGTACTTCCAAAAAAATGTGCAGAGGCTTATTTTCCATCAATCTCCCAACCGGAAGGATTACCTTTGAAAGTCCAGGATGCAAAAGGAAAGGAGTGGATATTTCAATTTCGCTTCTGGCCCAATAATAATAGTAGGATGTATGTTCTTGAAGGTGTTACTCCTTGCATACAAGCCATGCAATTGCAAGCAGGCGATATAGTAACGTTTAGTCGATTAGAGCCAGAAGGGAAGTTGGTTATGGGGTTCAGAAGGGCTACAACAGCACCTGATCAGGAGAATGAAATAAATAAGACTCTCAACGGAGTTCCTACCCATGGAGACGCTGACATGGTGGAGCCAAATTCATGGACGAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGTCTTGGGAGCAAAGCCTCTTGTTGCTAGAAAGAGGAAAAATAGCACACCAGGTTCAAAGACTAAACGACTTAAAATTGAAAGTGAGGACATTATAGAACTGAAGTTGACTTGGGAAGAAGCTCAAGGATTGCTCCGTCCCCCTTCTAACCATGTTCCCAGTATTGTGGTGATTGAAGGCTTTGAGTTTGAGGAATATGAGGATGCTCCAATAATTGGGAGGCCAACCATTATAACTTCTGATAATACATGCAATAAAGCTAAACTGGCAGACTTTCTGCATGTAATTATTCTTAAAATCTTCTTTACGCTGCCTGGTAGATCCATTTGTTCCGCCGCCCAAGAACTGACTACAGAACAGCTTGAAGAAATGCTAGCCCCCAGTTACTCGGCTCCTAAGAAAATGAAGGCTGCCAAACAAGAACCAGAACAGGTCGAGGCTTTAGAGGGGCTTGACGCTCTTGCAAACCTAGCTATATTGGGCGAGGGCGATTCAGTCCAGGCATCTTCACAGGCCACTACAAAGCACCCTCGCCATAGACCTGGCTGCTCTTGCATTGTCTGCATCCAACCTCCGAGCGGTAAGGGCCCCAAACATAAGCAAACATGTACATGTATTGTCTGCCTGACAGTAAAACGTAGATTCAGAACTCTAATGCTTCGCCGAGAAAGAAAACAGACAGAGCGGGAAGCAGAAACCACCCGCAAAAAGCAGCAACTATCAGTGCCTGAAGTGGATGATGAAATTCTGGAAAGTAGTAGTAGTAGACTGGTGGAGAAGGAGATGAATGATTGTTCTGATGATGATCCGACCAAGAAAAGAGCATCAACATCACCTTTTAAAGGACAAATTGATTTGAATATCCAACCGGAAAGAGAGGAAGAGCTGTCTCCTGGTTCGGACTCCGGCACCGTGATGAAGTTGCTCCAAGATGCATCCGAGAGGAGTCTCGGGCCGCCAAAAGTATCCGGCTCTGATGGAAGTATATCAAGCAATCCAGCGGAGCCTAGTGGAGGTGGAGCTCCGGCTGAAATTAGTAATAATAATGGCGTCGACCTCAGCAATAATTGTGAAGAAGATGACAAAGAACTTCCAGCAACTTTTACAAACATTTTGGCGTCCATGTCAGCCACTGGGTTGAAGTTATCTGCATCTTCCTCCTGGAGCTTGCTCACCTTCTACCACTGGCAAAGGAGAAAAGACACGAGAGTATTTTCTCGATCTGCACAAGCTGGCAAGGATCAAAACTCGGGCAAGATGAACGATCTGTTCTCTAACTCTTTCAAAAAATACGCAGACCTGAAGCAGCAGGCCTACGAAGACGGAATGGAGGCAGGAAACGAGACGGTAAATCTCGATAAGTTTTTTGAAGACGTTGAGAATGTGAAGGAAGACATGAGACAGGTGGAAAAGCTCTACAAGAAACTACAAGAAGCAAATGAAGAAAGCAAAGTAGTCCACAACGCAAAAACCATGAAGGAATTGAGAGCAAGAATGGATCAAGATGTCAGCCAGGTCTTAAGAAGAGTCAAAGTGATCAAAGGAAAGCTCGAAGCTCTCGATCGATCAAACGCATCCCATCGAAGCCTTCCCGGGTGCGGACCCGGTTCGTCTGCGGATAGAACAAGAACCTCAGTGGTGAGTGGATTGGGGAAGAAACTTAAAGACACCATGGATGATTTTCAGAGCTTAAGATCTAGAATGAATGCAGAATACAAAGAAACAGTAGAACGCAGGTATTTCACAATCACAGGAGAGAAGGCAAATGAAGAAACAATCGAGAATCTGATATCGAGCGGAGAAAGCGAAAATTTTCTGCAGAAAGCGATTCAAGAACAGGGTAGAGGCCAAATAATGGACACAATATCAGAAATACAAGAAAGGCACGATGCAGTGAAGGAGATAGAGAAGAACCTGATTGAGCTGCACCAGATATTTCTTGACATGGCTGCACTTGTGGAGGCGCAGGGGCATCAGCTCAACGACATAGAGAGTCACGTTGCACATGCTAATTCGTTTGTCCGGCGAGGCACTGAGCAGCTGCAGGAGGCCAGAGAACATCAGAAAAGCTCGAGGAAATGGACGTGCATTGCTGTAGTTCTCGGCGCAGTTCTCGTTGCCGTTCTGCTCTTCCCGCTTTTGACGTCGATTTTCCCCCATTTGATGTAG 3681 44.5 MASAAAPAGPSSSSSMKVCYNSDCKELKPERSRKGWRLQTGEFAELCDRCGCAYEEGRFCETFHLNATGWRCCESCGKRVHCGCIVSAHGFSLLDPGGIECMVCSRKNSIMTPHPMWSPSMFFHSSFPDRLKDLSVKNWSQLAGSGPVPWRQAPSLFNSSLATPEMHSRIPYEVDMATGIGKPSSIEKPSTPCFERQKNEDFSERFLNGNLKHGPRDICESGNAGTLTNFVIVTGIKREEQYNSCSNPIQHSISLKEDSSIPPFGLNIPYASPNDKSCQNGVSGTHLRPTHPPPHAKQLNSIHSSLQNGTDLPNENNIRNGRSRADQRGRNYLLPRYWPRFTDQELQQISADSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPSISQPEGLPLKVQDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQAMQLQAGDIVTFSRLEPEGKLVMGFRRATTAPDQENEINKTLNGVPTHGDADMVEPNSWTKVDKSGYIAKEVLGAKPLVARKRKNSTPGSKTKRLKIESEDIIELKLTWEEAQGLLRPPSNHVPSIVVIEGFEFEEYEDAPIIGRPTIITSDNTCNKAKLADFLHVIILKIFFTLPGRSICSAAQELTTEQLEEMLAPSYSAPKKMKAAKQEPEQVEALEGLDALANLAILGEGDSVQASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCIVCLTVKRRFRTLMLRRERKQTEREAETTRKKQQLSVPEVDDEILESSSSRLVEKEMNDCSDDDPTKKRASTSPFKGQIDLNIQPEREEELSPGSDSGTVMKLLQDASERSLGPPKVSGSDGSISSNPAEPSGGGAPAEISNNNGVDLSNNCEEDDKELPATFTNILASMSATGLKLSASSSWSLLTFYHWQRRKDTRVFSRSAQAGKDQNSGKMNDLFSNSFKKYADLKQQAYEDGMEAGNETVNLDKFFEDVENVKEDMRQVEKLYKKLQEANEESKVVHNAKTMKELRARMDQDVSQVLRRVKVIKGKLEALDRSNASHRSLPGCGPGSSADRTRTSVVSGLGKKLKDTMDDFQSLRSRMNAEYKETVERRYFTITGEKANEETIENLISSGESENFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREHQKSSRKWTCIAVVLGAVLVAVLLFPLLTSIFPHLM 1226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2085505 2099590 + BLOR20353 Blo08g00183 64135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00183 1226 Gene3D - 956 1083 - -
Blo08g00183 1226 Pfam Syntaxin 958 1161 IPR006011 GO:0016020
Blo08g00183 1226 MobiDBLite consensus disorder prediction 1029 1050 - -
Blo08g00183 1226 MobiDBLite consensus disorder prediction 275 326 - -
Blo08g00183 1226 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 14 807 - -
Blo08g00183 1226 SMART B3_2 361 462 IPR003340 GO:0003677
Blo08g00183 1226 MobiDBLite consensus disorder prediction 725 860 - -
Blo08g00183 1226 CDD B3_DNA 359 460 IPR003340 GO:0003677
Blo08g00183 1226 Pfam SNARE domain 1163 1214 IPR000727 -
Blo08g00183 1226 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 14 807 - -
Blo08g00183 1226 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 1126 1188 IPR000727 -
Blo08g00183 1226 ProSitePatterns Syntaxin / epimorphin family signature. 1132 1171 IPR006012 GO:0005484|GO:0006886|GO:0016020
Blo08g00183 1226 Pfam B3 DNA binding domain 361 461 IPR003340 GO:0003677
Blo08g00183 1226 SMART SynN_4 951 1077 IPR006011 GO:0016020
Blo08g00183 1226 Gene3D - 1119 1219 - -
Blo08g00183 1226 Gene3D - 339 466 IPR015300 -
Blo08g00183 1226 Coils Coil 956 993 - -
Blo08g00183 1226 MobiDBLite consensus disorder prediction 725 779 - -
Blo08g00183 1226 SUPERFAMILY DNA-binding pseudobarrel domain 358 461 IPR015300 -
Blo08g00183 1226 SUPERFAMILY t-snare proteins 955 1181 IPR010989 GO:0016020|GO:0016192
Blo08g00183 1226 CDD SynN 956 1113 IPR006011 GO:0016020
Blo08g00183 1226 MobiDBLite consensus disorder prediction 297 320 - -
Blo08g00183 1226 CDD SNARE_syntaxin1-like 1125 1187 - -
Blo08g00183 1226 SMART tSNARE_6 1121 1188 IPR000727 -
Blo08g00183 1226 ProSiteProfiles B3 DNA-binding domain profile. 361 462 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00183 - - - csv:101209415 1175.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01197 Blo-Chr3:38216882 Blo08g00183 Blo-Chr8:2085505 1.26E-162 dispersed
Blo04g00912 Blo-Chr4:10701857 Blo08g00183 Blo-Chr8:2085505 3.16E-51 dispersed
Blo08g00183 Blo-Chr8:2085505 Blo09g00301 Blo-Chr9:12804074 6.49E-25 dispersed
Blo10g00609 Blo-Chr10:18598301 Blo08g00183 Blo-Chr8:2085505 1.97E-16 dispersed
Blo16g00051 Blo-Chr16:1903083 Blo08g00183 Blo-Chr8:2085505 1.12E-45 dispersed
Blo18g00545 Blo-Chr18:7632504 Blo08g00183 Blo-Chr8:2085505 1.58E-17 dispersed
Blo19g00130 Blo-Chr19:3745824 Blo08g00183 Blo-Chr8:2085505 2.05E-16 dispersed
Blo14g00365 Blo-Chr14:3972538 Blo08g00183 Blo-Chr8:2085505 0 transposed
Blo15g00503 Blo-Chr15:8565426 Blo08g00183 Blo-Chr8:2085505 8.50E-69 transposed
Blo14g00364 Blo-Chr14:3958679 Blo08g00183 Blo-Chr8:2085505 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo18g00047 . 82 420 SNARE and Associated Proteins AT3G24350 60.1 5.5e-93 338.2
Blo17g00037 BCT 445 752 SNARE and Associated Proteins AT3G24350 62.3 1.9e-90 329.7
Blo04g00912 BCT 1 286 SNARE and Associated Proteins AT2G18260 53.8 5.1e-76 281.6
Blo15g00703 . 102 394 SNARE and Associated Proteins AT2G18260 50.2 4.3e-75 278.5
Blo01g00722 . 1 289 SNARE and Associated Proteins AT2G18260 50.2 1.5e-72 270.0
Blo16g00051 BCT 1 271 SNARE and Associated Proteins AT2G18260 51.6 6.1e-69 258.1
Blo09g00464 . 22 278 SNARE and Associated Proteins AT3G11820 81.3 3.2e-113 405.2
Blo12g00540 . 1 261 SNARE and Associated Proteins AT3G11820 73.6 7.1e-105 377.5
Blo08g00183 . 954 1204 SNARE and Associated Proteins AT3G11820 66.1 3.3e-94 342.0
Blo14g00365 . 31 281 SNARE and Associated Proteins AT3G11820 65.7 1.3e-93 340.1
Blo09g00464 . 29 278 SNARE and Associated Proteins AT3G52400 70.0 2.4e-90 329.3
Blo12g00540 . 13 261 SNARE and Associated Proteins AT3G52400 65.5 7.5e-84 307.8
Blo14g00365 . 1 281 SNARE and Associated Proteins AT3G52400 56.4 9.1e-82 300.8
Blo08g00183 . 924 1204 SNARE and Associated Proteins AT3G52400 56.4 1.2e-81 300.4
Blo14g00365 . 1 299 SNARE and Associated Proteins AT4G03330 67.9 7.8e-109 390.6
Blo08g00183 . 924 1218 SNARE and Associated Proteins AT4G03330 67.1 2.8e-106 382.1
Blo09g00464 . 1 278 SNARE and Associated Proteins AT4G03330 58.0 5.1e-84 308.1
Blo12g00540 . 10 261 SNARE and Associated Proteins AT4G03330 56.7 1.7e-74 276.6
Blo15g00503 . 136 373 SNARE and Associated Proteins AT4G03330 50.8 1.0e-55 214.2
Blo14g00365 . 1 299 SNARE and Associated Proteins AT1G61290 78.3 1.2e-125 446.4
Blo08g00183 . 924 1226 SNARE and Associated Proteins AT1G61290 77.6 5.0e-124 441.0
Blo09g00464 . 1 272 SNARE and Associated Proteins AT1G61290 63.5 3.1e-89 325.5
Blo12g00540 . 13 261 SNARE and Associated Proteins AT1G61290 61.8 6.9e-81 297.7
Blo14g00365 . 1 299 SNARE and Associated Proteins AT1G11250 76.6 1.8e-121 432.6
Blo08g00183 . 924 1226 SNARE and Associated Proteins AT1G11250 75.9 8.7e-121 430.3
Blo09g00464 . 1 272 SNARE and Associated Proteins AT1G11250 64.3 1.2e-93 340.1
Blo12g00540 . 3 261 SNARE and Associated Proteins AT1G11250 61.0 2.2e-84 309.3
Blo15g00503 . 96 396 SNARE and Associated Proteins AT3G03800 59.8 7.7e-88 320.9
Blo12g00540 . 13 277 SNARE and Associated Proteins AT3G03800 51.5 4.0e-60 228.8
Blo15g00503 . 97 293 SNARE and Associated Proteins AT5G08080 60.4 8.4e-52 200.7
Blo02g00982 . 1 263 SNARE and Associated Proteins AT5G16830 61.3 1.4e-75 280.0
Blo03g00106 . 225 443 SNARE and Associated Proteins AT5G16830 57.3 4.7e-60 228.4
Blo02g00982 . 1 274 SNARE and Associated Proteins AT5G46860 69.7 5.9e-84 307.8
Blo03g00106 . 225 414 SNARE and Associated Proteins AT5G46860 76.3 7.5e-71 264.2
Blo02g00982 . 1 257 SNARE and Associated Proteins AT4G17730 65.8 8.9e-77 283.9
Blo03g00106 . 225 414 SNARE and Associated Proteins AT4G17730 76.2 3.5e-73 271.9
Blo18g00562 BCT 1 182 SNARE and Associated Proteins AT4G17730 51.5 1.1e-42 170.6
Blo02g00982 . 65 256 SNARE and Associated Proteins AT1G32270 59.4 9.2e-50 194.5
Blo03g00106 . 289 440 SNARE and Associated Proteins AT1G32270 64.5 1.2e-44 177.6
Blo04g00243 . 1 337 SNARE and Associated Proteins AT5G05760 65.8 2.4e-111 399.1
Blo18g00047 . 82 420 SNARE and Associated Proteins AT3G24350 60.1 5.5e-93 338.2
Blo17g00037 BCT 445 752 SNARE and Associated Proteins AT3G24350 62.3 1.9e-90 329.7
Blo18g00633 . 1 341 SNARE and Associated Proteins AT5G26980 74.8 9.1e-124 440.3
Blo17g00673 . 115 418 SNARE and Associated Proteins AT5G26980 71.4 1.6e-112 402.9
Blo18g00633 . 1 339 SNARE and Associated Proteins AT4G02195 62.8 2.1e-99 359.4
Blo17g00673 . 115 416 SNARE and Associated Proteins AT4G02195 60.9 7.1e-92 334.3
Blo18g00633 . 1 339 SNARE and Associated Proteins AT3G05710 74.9 4.5e-126 448.0
Blo17g00673 . 115 416 SNARE and Associated Proteins AT3G05710 71.7 2.6e-113 405.6
Blo03g00538 . 1 220 SNARE and Associated Proteins AT1G16240 72.7 2.3e-84 308.9
Blo07g00879 . 34 267 SNARE and Associated Proteins AT1G16240 58.5 7.1e-70 260.8
Blo03g00538 . 1 220 SNARE and Associated Proteins AT1G79590 71.8 2.0e-84 309.3
Blo07g00879 . 34 267 SNARE and Associated Proteins AT1G79590 59.8 1.6e-70 263.1
Blo03g00554 . 55 234 SNARE and Associated Proteins AT1G28490 66.1 5.8e-60 227.6
Blo03g01454 . 55 215 SNARE and Associated Proteins AT1G28490 60.9 1.6e-49 193.0
Blo07g01404 . 1 248 SNARE and Associated Proteins AT3G09740 72.4 4.0e-93 338.2
Blo14g00167 . 1 233 SNARE and Associated Proteins AT3G09740 61.0 4.8e-70 261.5
Blo07g01404 . 1 248 SNARE and Associated Proteins AT3G45280 60.4 5.5e-74 274.6
Blo14g00167 . 1 236 SNARE and Associated Proteins AT3G45280 57.7 1.4e-66 250.0
Blo07g01404 . 1 248 SNARE and Associated Proteins AT3G61450 60.6 5.2e-77 284.6
Blo14g00167 . 1 235 SNARE and Associated Proteins AT3G61450 53.8 3.6e-62 235.3
Blo04g00134 . 624 868 SNARE and Associated Proteins AT1G51740 72.4 2.7e-91 332.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004766 0 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12717 PF00804 Syntaxin 6.50E-73 CL0445 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo08g00183 Blo_Chr08 FPKM 16.034281 17.497274 8.294203 7.766132 8.444707 9.787517 9.929418 0.0 0.0 0.0