Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00256 ATGGTTTACTTTTGCAGGTCAGCTAATATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTTCACAGGAGCCTTGGGACTCATATATCAAAGGTACTGTCAATAACGTTGGATGATTGGTCTGATGAGGAAATCGATGCCATGAGTGAGGTTGGAGGAAATGCTTCTGCTAATGCTATATATGAAGCTTTTATTCCTGAAGGATATTCAAAACCAAGGCCTGATGCTAGCCATGAAGATCGTTCAAAATACATCCGGTCTAAATATGAGCGCCAAGAATTTTTGAAACCTAGTTTGCGAATTTTGTCAACAAACTCAGCAAAGAGTTCTCTACAAACAAGTTTTTCTAGAAAGATGATGGATAGTTTTCGCAGTACAAATTCTTCCCTGAAATCGGAAGGCATGGTAGAATTTATTGGATTACTGAAAGTCAAAGTGATTAAAGGCACAAATTTGGCCATCAGGGATATGATGTCAAGCGACCCTTATGTTGTCTTGACTCTTGGGAACCAGACTTCTCAGACTACTGTGAAAAAGAGCGACTTGAATCCCATCTGGAATGAGGAACTCATGCTGTCAGTGCCTCAGGATTTTGGACCCCTAAAATTGCGGGTGTTCGACCACGATACATTTTCGGCAGATGATATCATGGGAGAGGCAGAGATTGACCTGCAACCGATGATAACATCGGCAATGGCATTTGGAGATGCAGGAATGTTTGGGAATATGCAGATTGGAAAATGGCTGAAATCTCATGATAACGCTCTCAAAGAGGATAGCACTGTCAATATTATAGATGGCAAGGTTAAACAGGACGTTTTACTCAAGCTTCAGAACGTGGAATCGGGAGATATAGATGTTGAGCTCGAATGGATGCCCCTTGATCAATAG 891 40.97 MVYFCRSANIGVFICLKCCGVHRSLGTHISKVLSITLDDWSDEEIDAMSEVGGNASANAIYEAFIPEGYSKPRPDASHEDRSKYIRSKYERQEFLKPSLRILSTNSAKSSLQTSFSRKMMDSFRSTNSSLKSEGMVEFIGLLKVKVIKGTNLAIRDMMSSDPYVVLTLGNQTSQTTVKKSDLNPIWNEELMLSVPQDFGPLKLRVFDHDTFSADDIMGEAEIDLQPMITSAMAFGDAGMFGNMQIGKWLKSHDNALKEDSTVNIIDGKVKQDVLLKLQNVESGDIDVELEWMPLDQ 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3265436 3268539 - BLOR20426 Blo08g00256 64208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00256 296 SMART arf_gap_3 6 102 IPR001164 GO:0005096
Blo08g00256 296 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 7 296 - -
Blo08g00256 296 Gene3D Arf GTPase activating protein 5 100 IPR038508 -
Blo08g00256 296 ProSiteProfiles C2 domain profile. 122 237 IPR000008 -
Blo08g00256 296 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 7 296 IPR044518 GO:0005096|GO:0005543
Blo08g00256 296 Pfam C2 domain 140 229 IPR000008 -
Blo08g00256 296 PRINTS HIV Rev interacting protein signature 11 28 IPR001164 GO:0005096
Blo08g00256 296 PRINTS HIV Rev interacting protein signature 32 53 IPR001164 GO:0005096
Blo08g00256 296 CDD ArfGap 7 89 - -
Blo08g00256 296 SUPERFAMILY ArfGap/RecO-like zinc finger 7 97 IPR037278 -
Blo08g00256 296 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 140 287 IPR035892 -
Blo08g00256 296 SMART C2_3c 141 236 IPR000008 -
Blo08g00256 296 Pfam Putative GTPase activating protein for Arf 7 96 IPR001164 GO:0005096
Blo08g00256 296 Gene3D C2 domain 138 296 IPR035892 -
Blo08g00256 296 ProSiteProfiles ARF GTPase-activating proteins domain profile. 7 108 IPR001164 GO:0005096
Blo08g00256 296 CDD C2_ArfGAP 139 283 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo08g00256 Blo14g00445 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00402 Blo-Chr4:3293491 Blo08g00256 Blo-Chr8:3265436 7.17E-92 dispersed
Blo08g00256 Blo-Chr8:3265436 Blo13g00639 Blo-Chr13:28948742 1.20E-101 dispersed
Blo01g00958 Blo-Chr1:24547561 Blo08g00256 Blo-Chr8:3265436 2.87E-41 transposed
Blo14g00445 Blo-Chr14:5256358 Blo08g00256 Blo-Chr8:3265436 1.50E-59 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00256 K12486 - zju:107406254 512.686