Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00259 ATGGCTTCTTATTCAGACGGTAGTCAGGCTGATGACCAGCAAAAACACGATGAATCTGAGAACAGGTCTTCATCTACATCGACTGGACTGTCTCATCATGGCATTTCGAATCCAAATCAGTATACAATGCCTGCGCAACTTGGAGTGGGTCATGCAATGGCACCATCGACTGATCCATATCCCGATCCTTACTACAGAAGCATCTTTGCTCCCTATGATGGACAGCCATATCCTACCCAGCCTTATGGTGGGCAACCTATGGTTCATTTCCAGTTGATGGGAATTCAGCAGGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTGAATGCCAAACAGTATCATGGCATCATGCGGAGGCGTCAATCTCGTGCAAAAGCAGAATCAGAAAATAAAGTTTTGAAGTCTAGGAAGCCATATTTGCACGAATCTCGGCATTTACATGCATTGAAACGAGCTAGAGGATGTGGCGGTAGGTTTCTTAAGGCGAAGGAAAATGAAAACCAATCAAATGAGGTGACATCAGGAGACGAATCACAAACCAACTTACGCCTTAACAACAACAAAAACAATCCTGCTTCCTCGGACAGTGCTTCCTAA 612 45.59 MASYSDGSQADDQQKHDESENRSSSTSTGLSHHGISNPNQYTMPAQLGVGHAMAPSTDPYPDPYYRSIFAPYDGQPYPTQPYGGQPMVHFQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARGCGGRFLKAKENENQSNEVTSGDESQTNLRLNNNKNNPASSDSAS 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3301451 3303012 + BLOR20429 Blo08g00259 64211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00259 203 MobiDBLite consensus disorder prediction 125 144 - -
Blo08g00259 203 ProSitePatterns NF-YA/HAP2 subunit signature. 112 132 IPR018362 GO:0003677|GO:0016602
Blo08g00259 203 MobiDBLite consensus disorder prediction 23 44 - -
Blo08g00259 203 Gene3D - 107 169 - -
Blo08g00259 203 MobiDBLite consensus disorder prediction 1 55 - -
Blo08g00259 203 PRINTS CCAAT-binding transcription factor subunit B signature 141 164 IPR001289 GO:0003700|GO:0006355
Blo08g00259 203 PRINTS CCAAT-binding transcription factor subunit B signature 110 132 IPR001289 GO:0003700|GO:0006355
Blo08g00259 203 MobiDBLite consensus disorder prediction 164 203 - -
Blo08g00259 203 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 109 164 IPR001289 GO:0003700|GO:0006355
Blo08g00259 203 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 4 186 - -
Blo08g00259 203 SMART cbf3 106 167 IPR001289 GO:0003700|GO:0006355
Blo08g00259 203 MobiDBLite consensus disorder prediction 171 203 - -
Blo08g00259 203 ProSiteProfiles NF-YA/HAP2 family profile. 107 167 IPR001289 GO:0003700|GO:0006355
Blo08g00259 203 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 186 IPR001289 GO:0003700|GO:0006355
Blo08g00259 203 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01379 Blo-Chr3:40225072 Blo08g00259 Blo-Chr8:3301451 1.80E-39 dispersed
Blo08g00103 Blo-Chr8:1083191 Blo08g00259 Blo-Chr8:3301451 6.72E-30 dispersed
Blo08g00259 Blo-Chr8:3301451 Blo14g00284 Blo-Chr14:2845175 2.00E-32 dispersed
Blo14g00448 Blo-Chr14:5297558 Blo08g00259 Blo-Chr8:3301451 4.47E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12725 PF02045 CBFB_NFYA 1.30E-26 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00259 K08064 - jre:109011209 280.026