Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00259 ATGGCTTCTTATTCAGACGGTAGTCAGGCTGATGACCAGCAAAAACACGATGAATCTGAGAACAGGTCTTCATCTACATCGACTGGACTGTCTCATCATGGCATTTCGAATCCAAATCAGTATACAATGCCTGCGCAACTTGGAGTGGGTCATGCAATGGCACCATCGACTGATCCATATCCCGATCCTTACTACAGAAGCATCTTTGCTCCCTATGATGGACAGCCATATCCTACCCAGCCTTATGGTGGGCAACCTATGGTTCATTTCCAGTTGATGGGAATTCAGCAGGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTGAATGCCAAACAGTATCATGGCATCATGCGGAGGCGTCAATCTCGTGCAAAAGCAGAATCAGAAAATAAAGTTTTGAAGTCTAGGAAGCCATATTTGCACGAATCTCGGCATTTACATGCATTGAAACGAGCTAGAGGATGTGGCGGTAGGTTTCTTAAGGCGAAGGAAAATGAAAACCAATCAAATGAGGTGACATCAGGAGACGAATCACAAACCAACTTACGCCTTAACAACAACAAAAACAATCCTGCTTCCTCGGACAGTGCTTCCTAA 612 45.59 MASYSDGSQADDQQKHDESENRSSSTSTGLSHHGISNPNQYTMPAQLGVGHAMAPSTDPYPDPYYRSIFAPYDGQPYPTQPYGGQPMVHFQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKVLKSRKPYLHESRHLHALKRARGCGGRFLKAKENENQSNEVTSGDESQTNLRLNNNKNNPASSDSAS 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3301451 3303012 + BLOR20429 Blo08g00259 64211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00259 203 MobiDBLite consensus disorder prediction 125 144 - -
Blo08g00259 203 ProSitePatterns NF-YA/HAP2 subunit signature. 112 132 IPR018362 GO:0003677|GO:0016602
Blo08g00259 203 MobiDBLite consensus disorder prediction 23 44 - -
Blo08g00259 203 Gene3D - 107 169 - -
Blo08g00259 203 MobiDBLite consensus disorder prediction 1 55 - -
Blo08g00259 203 PRINTS CCAAT-binding transcription factor subunit B signature 141 164 IPR001289 GO:0003700|GO:0006355
Blo08g00259 203 PRINTS CCAAT-binding transcription factor subunit B signature 110 132 IPR001289 GO:0003700|GO:0006355
Blo08g00259 203 MobiDBLite consensus disorder prediction 164 203 - -
Blo08g00259 203 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 109 164 IPR001289 GO:0003700|GO:0006355
Blo08g00259 203 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 4 186 - -
Blo08g00259 203 SMART cbf3 106 167 IPR001289 GO:0003700|GO:0006355
Blo08g00259 203 MobiDBLite consensus disorder prediction 171 203 - -
Blo08g00259 203 ProSiteProfiles NF-YA/HAP2 family profile. 107 167 IPR001289 GO:0003700|GO:0006355
Blo08g00259 203 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 186 IPR001289 GO:0003700|GO:0006355
Blo08g00259 203 MobiDBLite consensus disorder prediction 125 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00259 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - jre:109011209 280.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01379 Blo-Chr3:40225072 Blo08g00259 Blo-Chr8:3301451 1.80E-39 dispersed
Blo08g00103 Blo-Chr8:1083191 Blo08g00259 Blo-Chr8:3301451 6.72E-30 dispersed
Blo08g00259 Blo-Chr8:3301451 Blo14g00284 Blo-Chr14:2845175 2.00E-32 dispersed
Blo14g00448 Blo-Chr14:5297558 Blo08g00259 Blo-Chr8:3301451 4.47E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1141 Cone9ag1129 . . . . Blo08g00259 . . . . . Bma07g00447 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g01379 BCT,CCT,ECH 16 243 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.5 3.4e-55 212.2
Blo14g00284 BCT,CCT,ECH 134 306 CCAAT-HAP2 Transcription Factor Family AT3G20910 56.6 3.6e-45 179.1
Blo03g01379 BCT,CCT,ECH 118 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.2 5.1e-44 175.3
Blo03g00980 BCT,CCT,ECH 118 248 CCAAT-HAP2 Transcription Factor Family AT3G20910 64.9 7.7e-40 161.4
Blo08g00103 BCT,CCT,ECH 110 269 CCAAT-HAP2 Transcription Factor Family AT3G20910 55.3 4.2e-38 155.6
Blo14g00448 . 105 216 CCAAT-HAP2 Transcription Factor Family AT2G34720 74.1 1.1e-40 163.3
Blo14g00448 . 51 218 CCAAT-HAP2 Transcription Factor Family AT1G30500 60.1 5.3e-47 184.5
Blo08g00259 . 10 171 CCAAT-HAP2 Transcription Factor Family AT1G30500 56.5 2.1e-43 172.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12725 PF02045 CBFB_NFYA 1.30E-26 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo08g00259 Blo_Chr08 FPKM 0.780258 1.208486 0.682955 1.001938 0.91269 0.519294 1.022061 6.353749 6.582527 6.359333