Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00260 ATGGCTCTTGTTATGCACAAAGATTCATTTGACAAGCAGATGGATTCGGGCAAGTACGTGAGATATACACCAGAGCAGGTTGAAGCCTTAGAGAGGGTTTACTCTGAATGTCCAAAGCCTAGCTCTTTAAGGCGGCAACAGCTCATTAGGGAGTGTCCGATTCTCTCCAATATTGAGCCTAAACAAATCAAAGTTTGGTTTCAGAATCGCAGATGCCGTGAGAAGCAGAGAAAAGAATCTGCTCGTCTTCAAACTGTGAATAGAAAGTTGAACGCCATGAACAAACTCTTAATGGAAGAGAATGATCGCTTGCAGAAGCAGGTCTCTCAGCTGGTTTATGATAATGGGTATATGCGTCAGCAACTGCATAGTGCGTCTGGAACGACCACAGACAATAGCTGTGAGTCTGTGGTCGTGAGTGGTCAGCACCAACAACAGCAAAACCCAACACCTCAGTGTCCTGAACGGGATGCTGCAAGCCCAGCTGGTCTTCTAGCGATAGCAGAGGAGACCCTGGCGGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTGTTTCTCGCAACTGCCGTGGAGTAGCAGCACGAGCTTGTGGTCTCGTCAGTCTAGAGCCCACCAAAGTTGCTGAAATCTTGAAAGATCGTCCTTCATGGTTTCGCGACTGCCGATGTGTTGATATACTAAATGTAATCCCTGCCGGAAATGGAGGGAGAATAGAGCTCATATACATGCAGACTTATGCTCCTACGACATTGGCCGCAGCTCGAGACTTCTGGACATTACGATACACCACTAGTTTAGATGATGGCAGCCTTGTGGTATGTGAGAGATCTTTGAATTCCTCAACCGGTGGTCCCACAGGGCCACCTACTTCGGGTTTTGCGAGAGCTGAAATGCTTCCCAGCGGATGTTTAGTCCGTGCTTGTGAGGGTGGCGGGTCAATTATTCACATTGTTGATCACATTGATTTTGATGTTTGGAGTGTACCTGAAGTTCTAAGGCCTCTTTATGAATCTTCGAAGATTCTTGCTCAGAAGATGACCATAGCTGCACTCCGGCACATCAGACAAATCGCTCAAGAGTTTAACGGTGAAGTTCAACACGGCAGTGGCCGCCAGCCTGCTGTTTTAAGGACATTCAGTCAGAAACTGTGCAGGGGGTTCAATGACGCCATTAACGGATTTGTCGATGACGGTTGGTCCCTTATGGGTAGTGACGGGGTGGAGGATGTAACAATTACAATCAATTCATCGCCAAACAAACTTTTTAATACCCAATATGGCAGCATTGCAATGTTTTCGAGTTTTGGCGGGGGTGTGCTATGCGCCAAGGCATCAATGCTATTGCAGAATGTTCCCCCTGCTTTGCTGGTTCGTTTCTTGAGGGAGCATCGCGCCGAGTGGGCTGATTATGGGGTGGATGCCTACTCTGCCGCATGTATTAAGGCCAACCCTTTTTCAGTCCCATGTCCGAGGCCTGGTGGCTCACCTAGTAGCCAAGTTATTCTTCCTCTTGCTCATACTGTCGAACACGAAGAGTTCTTGGAGGTGCTTCGGCTCGAGGGCCATGCATTTCCTCCCAATGATGTAGGTTTGACGGAACGGGATATGTACTTATTGCAGCTATGTAGTGGGGTTGATGAGAACTCAGTTGGCTCCTGTGCCCAGCTTGTTTTTGCTCCTATCGATGAATCTTTTGCCGATGATGCCCCCCTGCTACCCTCTGGTTTTCGGGTCATACCCTTAGATCTGAAAACGGATGGTGCTGGGGCCGGCTCTGCTACTCGCACTTTGGATTTGGCTTCTACCCTTGAAGTGCGGCCCTGCAGTGCTCGTTCTGGCATCGAAGTGGATTCGAATGGCTACAACCTTCGATCTGTATTGACAATTGCTTTCCAATTTGCTTTTGAGAGTCACATGCGAGACAGTGTTGCTGCCATGGCTCGACAGTATGTTCGTAATGTCGTGGGGTCTGTCCAGAGGGTGGCTATGGCCATTGCTCCTTCTCCCATGAGTTCCCTCATGAGCCCGAAACCCCCTTCGGTTTCTCCCGAAGCCGTTACTTTGGCCCGATGGATTTGCCGAAGTTACAGAATACATGTTGGCGAGGAGCTCCTTCGACCTGATTCACAATCCAGGGAAGGTATACTTAAGCAACTTTGGCACCATTCCGACGCAATTATGTGCTGCTCGGCGAAAACTAATGCATCGTCCATTTTCACATTTGCCAACCAGGCTGGCCTTGACATGCTCGAAACTACCCTAGTTGCCCTCCAAGATATAATGCTCGACAAAATTCTGGACGAAGCTGGCCGGAAAATTCTCTGCTTGGAGTTCTCCAAGATCATGCAGCAGGGATTTGTACATCTGCCGGCTGGAATTTGCATGTCGAGCATGGCCAGGCCAGTATCTTATGAGCATGCCATTACTTGGAAAGTCCTGGACGATGAAGACTCGAATCACTGCCTGGCTTTTATGTTCATCAACTGGTCTTTTGTATGA 2556 48.87 MALVMHKDSFDKQMDSGKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESARLQTVNRKLNAMNKLLMEENDRLQKQVSQLVYDNGYMRQQLHSASGTTTDNSCESVVVSGQHQQQQNPTPQCPERDAASPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCRGVAARACGLVSLEPTKVAEILKDRPSWFRDCRCVDILNVIPAGNGGRIELIYMQTYAPTTLAAARDFWTLRYTTSLDDGSLVVCERSLNSSTGGPTGPPTSGFARAEMLPSGCLVRACEGGGSIIHIVDHIDFDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQEFNGEVQHGSGRQPAVLRTFSQKLCRGFNDAINGFVDDGWSLMGSDGVEDVTITINSSPNKLFNTQYGSIAMFSSFGGGVLCAKASMLLQNVPPALLVRFLREHRAEWADYGVDAYSAACIKANPFSVPCPRPGGSPSSQVILPLAHTVEHEEFLEVLRLEGHAFPPNDVGLTERDMYLLQLCSGVDENSVGSCAQLVFAPIDESFADDAPLLPSGFRVIPLDLKTDGAGAGSATRTLDLASTLEVRPCSARSGIEVDSNGYNLRSVLTIAFQFAFESHMRDSVAAMARQYVRNVVGSVQRVAMAIAPSPMSSLMSPKPPSVSPEAVTLARWICRSYRIHVGEELLRPDSQSREGILKQLWHHSDAIMCCSAKTNASSIFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCLEFSKIMQQGFVHLPAGICMSSMARPVSYEHAITWKVLDDEDSNHCLAFMFINWSFV 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3315882 3320888 + BLOR20430 Blo08g00260 64212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00260 851 CDD homeodomain 18 78 IPR001356 GO:0003677
Blo08g00260 851 Gene3D - 185 379 IPR023393 -
Blo08g00260 851 SMART START_1 166 376 IPR002913 GO:0008289
Blo08g00260 851 SMART HOX_1 15 81 IPR001356 GO:0003677
Blo08g00260 851 Coils Coil 83 107 - -
Blo08g00260 851 SUPERFAMILY Bet v1-like 167 378 - -
Blo08g00260 851 Pfam MEKHLA domain 706 850 IPR013978 -
Blo08g00260 851 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 851 IPR044830 GO:0003700
Blo08g00260 851 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Blo08g00260 851 CDD bZIP 70 109 - -
Blo08g00260 851 ProSiteProfiles START domain profile. 157 385 IPR002913 GO:0008289
Blo08g00260 851 SUPERFAMILY Bet v1-like 414 600 - -
Blo08g00260 851 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 851 - -
Blo08g00260 851 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Blo08g00260 851 Pfam START domain 167 374 IPR002913 GO:0008289
Blo08g00260 851 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Blo08g00260 851 Gene3D - 11 84 - -
Blo08g00260 851 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01089 Blo-Chr3:37340200 Blo08g00260 Blo-Chr8:3315882 0 dispersed
Blo03g01280 Blo-Chr3:39101489 Blo08g00260 Blo-Chr8:3315882 0 dispersed
Blo08g00260 Blo-Chr8:3315882 Blo12g00752 Blo-Chr12:25868188 0 dispersed
Blo14g00450 Blo-Chr14:5329294 Blo08g00260 Blo-Chr8:3315882 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12726 PF01852 START 3.60E-48 CL0209 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00260 K09338 - jre:108996578 1419.45