Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00315 ATGTCAGACCAACCAAACTCGGAGACCGAGTCAGGCTTCACCAACTTGCCTTCTTCTTCCTCCCCTTCACTGTCCTCTTCGCCCGGAGAATCGATTGGTCAATCGCCACAGAAACGTCAGAAACGATCAGCTCAAAATATCAATACTGACCATCCCGTTTTCCGGGGAGTTCGAAAGCGAGCTTGGGGCAAATGGGTATCTGAAATCCGAGAACCCAGAAAGAAAAATCGGATCTGGCTAGGAACTTTCTCCACACCGGAAATGGCCGCTCGAGCTCACGACGTCGCCGCTTTAAGTATAAAAGGAAACTCCGCTATTCTCAACTTCCCAGAACTCGCCGAAGCTCTTCCCCGGCCTGCTTCCAACTCTCCTCGAGATGTGCAAGTCGCCGCTGCTAAAGCCGCTTCAATGGAGTTTCCCTTTCCTTCACTAAAGTCGCCATGGCCGATCACTCAGTCTTCTTTCACTTCTTCTTCTTCTTCGTCCTCTTCGCTATCATCTTTAGAGGAATCGACGCCGGAGGAACTCAGCGAGATAGTACGTTTGCCGAGCTTAGGGACAAGTTTCTGCTCCTCTGACTCCGGTAACGAGCTGGTGTTCGTTGACTCAGCGGATAATCTTCTCTATCCTTACCCATGGTATCAAAACATAAATGAAGATGAAGCTTTCTGTTTATCAATGGCGGAAACAGAGTCATTGATTCCTACTGTCTTCGAAGCGTCCTTATGCCTGCATTAA 738 49.05 MSDQPNSETESGFTNLPSSSSPSLSSSPGESIGQSPQKRQKRSAQNINTDHPVFRGVRKRAWGKWVSEIREPRKKNRIWLGTFSTPEMAARAHDVAALSIKGNSAILNFPELAEALPRPASNSPRDVQVAAAKAASMEFPFPSLKSPWPITQSSFTSSSSSSSSLSSLEESTPEELSEIVRLPSLGTSFCSSDSGNELVFVDSADNLLYPYPWYQNINEDEAFCLSMAETESLIPTVFEASLCLH 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4539119 4539856 + BLOR20485 Blo08g00315 64267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00315 245 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Blo08g00315 245 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Blo08g00315 245 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Blo08g00315 245 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Blo08g00315 245 MobiDBLite consensus disorder prediction 1 52 - -
Blo08g00315 245 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Blo08g00315 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 223 - -
Blo08g00315 245 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Blo08g00315 245 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Blo08g00315 245 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 5 223 - -
Blo08g00315 245 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Blo08g00315 245 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01672 Blo-Chr1:56454109 Blo08g00315 Blo-Chr8:4539119 4.09E-37 dispersed
Blo08g00315 Blo-Chr8:4539119 Blo18g00081 Blo-Chr18:691852 8.00E-57 dispersed
Blo12g00822 Blo-Chr12:26570630 Blo08g00315 Blo-Chr8:4539119 3.62E-35 dispersed
Blo02g01028 Blo-Chr2:39982096 Blo08g00315 Blo-Chr8:4539119 3.13E-40 transposed
Blo14g00741 Blo-Chr14:19962241 Blo08g00315 Blo-Chr8:4539119 1.19E-28 transposed
Blo01g00519 Blo-Chr1:5705740 Blo08g00315 Blo-Chr8:4539119 1.13E-57 wgd
Blo16g01019 Blo-Chr16:38553246 Blo08g00315 Blo-Chr8:4539119 1.07E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12731 PF00847 AP2 8.30E-14 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00315 K09286 - jre:108986620 244.202