Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00380 ATGGTCGACAACTTCGCAGTGGGATCGCGGTTCCACCCTCGGAGGATCGACTACAACCGCTTCCTTCCCGCCTTCTTTTTTTCTCACAGATCCCTATTCACCTTCCTATGGATCGCTGCTTTTGCCTCCGCTTTCCTTTGGCAACAGAACATTGTACAATTCTCCGTATACCGATGGCTCCCTGTGAGACCGATCCCGAGACTGCGGCCGGTAGCATTCAACTTGACGGATTTTGGAGGGGTGGGTGATGGGGTTACCCTGAATACCAAGGCGTTTGAGAGAGCCGTTTCGGCTATTTCGAAGTTGGGTAAGAAAGGTGGCGGTCAGCTTAACGTTCCGCCTGGGCGCTGGCTTACTGCCCCTTTTAATCTCACTAGTCACATGACTCTGTTTCTCGCCGAAGATTCTGTTATCCTTGGTGTTCAGTTATATGGTTTCCCAACTGCACTCGACTTTATTAGGAAAGAAATAAGAGTAGTTTTACTTACAATATTTGTTGTTTCATGGGATGAAAAGAAATGGCCACTACTGCCTCCGTTGCCTTCCTATGGACATGGCAGAGAACGAGTAGGACCTCGATATGGAAGCTTGATCCATGGCCAAAATCTTAAAGATGTTGTCATTACAGGGCATAATGGCACTATTGATGGACAGGGTCAAACATGGTGGACTAAGTATACCCAGAAGCTTCTCAACCACACAAGGGGCCCCCTTGTCCAGATTATGTGGTCAAGCAATATTGTCATCACCAATATAACTTTGCGCAACTCTCCTTTTTGGACACTTCATCCATATGATTGCAAAAATGTAACCATAAGAAAAGTTACCATCTTGGCTCCGACAATAGGAGCACCAAACACTGATGGGATAGATCCAGACTCATGCAAGGATATGCTGATTGAGGACTGTTACATAAGTGTCGGAGATGATGGAATTGCAATTAAGAGTGGTTGGGATCAATATGGAATTGTATATGGGCGACCCTCGACAAATATACGAATTAGAAATCTTATCGTTCAGTCTATGGTCAGTGCTGGAGTATCAATAGGCAGCGAAATGTCTGGTGGGGTATCGGGCGTGACAGTGGAAAACCTCATTGTGTGGAACTCCAGACGTGGTGTTCGGATCAAAACGGCTCCCGGAAGAGGGGGTTATGTGAGAGACATAACGTATAAAAATGTGACATTTGACAACGTTCGTGTCGGAATTGTTGTAAAGACAGACTACAACGAACACCCTGAGCACTACGATCTAAAAGCTATTCCTCTGCTTGAAAACATCAGCTTCACTGGCATCCATGGCCAGGGAGTTCGAGTTCCGGTCCGCATCGACGGAAGCCAAGACATTCCTGTGAGGAACGTGACTTTCCGGGATATGTCAGTGGGAATAACGTACAAGAAGAAGCATATATTTCAGTGTGCATTTGTCCACGGTCAGGTGATAGGAACCGTTTTTCCCCCTCCGTGCGAGAACCTGGACCGATACGACGAGCAAGAAAGCATTTTTGGGCTGTGGGTCCTCTCAGATATGGCAACAGCTCAGCTGACTGCATCCCCTATCTCAGCGAGGAGGCTGCCATCTTTTGATGGGCTTCGGCCTTCTGCTAACAAGTTTTCCCCTGCCTTTGAAAATGTGAGGATGGGTGGGCCAGTGCCCAATCGCCCTTTCCGAAGTCTGTTGGTTAAAGCTGCCACTGTCATTGCTCCCAAGTACACTGCTGTGAAGCCTTTGGGTGACAGAGTACTAGTTAAGACGAAAACTGCAGAAGAGAAGACCGAAGGAGGTATACTGCTTCCAACTGCAGCTCAGACCAAGCCCCAAGTGGGTGAAGTGGTTGCTGTCGGTGAAGGAAAAACAATCGGAAAGACCAAACTAGATATTTGTGTTAAGACTAGTACTCAAGTTGTGTATTCGAAGTATGCTGGGACTGAGTTGGATTTCGACGGCTCGAAGCATCTTATCTTGAAGGAGGATGACATTGTCGGTGTCTTCGAAACAGATGATGTGAAGGATCTAAAGCCCTTGAACGACAGAGTTTTGATCAAGGTTGTGGCCGAAGCTGAAGAGAAGACTGCCGGAGGATTGTTGCTGACAGAAGCAACGAAGGAGAAGCCTTCTATTGGCACGGTGATAGCTGTCGGAGCGGGACCACTCGATGAGGAAGGCAACAGAAAACCGATACCAATCTCAACTGGCAGCTCTGTGATGTACTCCAAATATGCAGGCAATGACTTAAAGGGCAAGGACGGGTCAGAATATATTGTTGTAAGGATTTCAGACGTCATGGCTGTGCTTTCTTAG 2301 47.28 MVDNFAVGSRFHPRRIDYNRFLPAFFFSHRSLFTFLWIAAFASAFLWQQNIVQFSVYRWLPVRPIPRLRPVAFNLTDFGGVGDGVTLNTKAFERAVSAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLAEDSVILGVQLYGFPTALDFIRKEIRVVLLTIFVVSWDEKKWPLLPPLPSYGHGRERVGPRYGSLIHGQNLKDVVITGHNGTIDGQGQTWWTKYTQKLLNHTRGPLVQIMWSSNIVITNITLRNSPFWTLHPYDCKNVTIRKVTILAPTIGAPNTDGIDPDSCKDMLIEDCYISVGDDGIAIKSGWDQYGIVYGRPSTNIRIRNLIVQSMVSAGVSIGSEMSGGVSGVTVENLIVWNSRRGVRIKTAPGRGGYVRDITYKNVTFDNVRVGIVVKTDYNEHPEHYDLKAIPLLENISFTGIHGQGVRVPVRIDGSQDIPVRNVTFRDMSVGITYKKKHIFQCAFVHGQVIGTVFPPPCENLDRYDEQESIFGLWVLSDMATAQLTASPISARRLPSFDGLRPSANKFSPAFENVRMGGPVPNRPFRSLLVKAATVIAPKYTAVKPLGDRVLVKTKTAEEKTEGGILLPTAAQTKPQVGEVVAVGEGKTIGKTKLDICVKTSTQVVYSKYAGTELDFDGSKHLILKEDDIVGVFETDDVKDLKPLNDRVLIKVVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGAGPLDEEGNRKPIPISTGSSVMYSKYAGNDLKGKDGSEYIVVRISDVMAVLS 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6328741 6335502 + BLOR20550 Blo08g00380 64332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00380 766 PANTHER POLYGALACTURONASE-RELATED 22 500 - -
Blo08g00380 766 SMART pbh1 329 351 IPR006626 -
Blo08g00380 766 SMART pbh1 267 294 IPR006626 -
Blo08g00380 766 SMART pbh1 295 316 IPR006626 -
Blo08g00380 766 SMART pbh1 386 407 IPR006626 -
Blo08g00380 766 SMART pbh1 446 467 IPR006626 -
Blo08g00380 766 SMART pbh1 357 378 IPR006626 -
Blo08g00380 766 SMART Cpn10_2 573 664 IPR020818 GO:0005524|GO:0006457|GO:0140662
Blo08g00380 766 SMART Cpn10_2 671 765 IPR020818 GO:0005524|GO:0006457|GO:0140662
Blo08g00380 766 Gene3D - 61 479 IPR012334 -
Blo08g00380 766 CDD cpn10 574 664 IPR020818 GO:0005524|GO:0006457|GO:0140662
Blo08g00380 766 SUPERFAMILY GroES-like 572 665 IPR011032 -
Blo08g00380 766 SUPERFAMILY Pectin lyase-like 59 517 IPR011050 -
Blo08g00380 766 Hamap Co-chaperonin GroES [groES]. 671 766 IPR020818 GO:0005524|GO:0006457|GO:0140662
Blo08g00380 766 CDD cpn10 672 765 IPR020818 GO:0005524|GO:0006457|GO:0140662
Blo08g00380 766 Pfam Glycosyl hydrolases family 28 196 477 IPR000743 GO:0004650|GO:0005975
Blo08g00380 766 Pfam Chaperonin 10 Kd subunit 574 664 IPR020818 GO:0005524|GO:0006457|GO:0140662
Blo08g00380 766 Pfam Chaperonin 10 Kd subunit 672 764 IPR020818 GO:0005524|GO:0006457|GO:0140662
Blo08g00380 766 Hamap Co-chaperonin GroES [groES]. 573 665 IPR020818 GO:0005524|GO:0006457|GO:0140662
Blo08g00380 766 PANTHER PECTIN LYASE-RELATED 22 500 - -
Blo08g00380 766 PRINTS 10kDa chaperonin signature 574 589 IPR020818 GO:0005524|GO:0006457|GO:0140662
Blo08g00380 766 PRINTS 10kDa chaperonin signature 596 617 IPR020818 GO:0005524|GO:0006457|GO:0140662
Blo08g00380 766 PRINTS 10kDa chaperonin signature 630 642 IPR020818 GO:0005524|GO:0006457|GO:0140662
Blo08g00380 766 PRINTS 10kDa chaperonin signature 651 664 IPR020818 GO:0005524|GO:0006457|GO:0140662
Blo08g00380 766 Gene3D GroES chaperonin 667 766 IPR037124 GO:0006457
Blo08g00380 766 Gene3D GroES chaperonin 567 666 IPR037124 GO:0006457
Blo08g00380 766 ProSitePatterns Chaperonins cpn10 signature. 574 598 IPR018369 GO:0005524|GO:0006457
Blo08g00380 766 SUPERFAMILY GroES-like 671 765 IPR011032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00380 Blo-Chr8:6328741 Blo16g00545 Blo-Chr16:22437560 8.52E-121 dispersed
Blo09g00360 Blo-Chr9:14318562 Blo08g00380 Blo-Chr8:6328741 4.63E-09 dispersed
Blo07g01259 Blo-Chr7:32785556 Blo08g00380 Blo-Chr8:6328741 2.03E-25 transposed
Blo14g00577 Blo-Chr14:9208927 Blo08g00380 Blo-Chr8:6328741 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00380 - - rcu:8259080 789.26