Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00382 ATGGGAGGCGCTGCTTCCATTTTCGCAAATCATCTTGCGTTGTGTTTGCTGCTCGTTCTTGGGTGGCGCAGCCTATTTGGCGTGGCTGCTGCTGTTTCTCCGACGGGGGAGCGATATTTGAATGTTCCCTCCTCAGACTTTGCCGACTCTCTCGGCATTACAGTGGAGGTTATCCGACAGGTTACTCCCATTTTCTCTCAGTTTTCCAATTTCGCCGGCGACTTCCGACTTTCCACTGCCGTTTCCGACTGCCTTGATCTCCTCGACTCTTCTCTTGACGATTTGACTTGGTCCCTCTCCGCCACCCGCAATCCTAAGGCCAAAAACAATAGCACCGGAAAGATCAGCTCTGATTTGAAGACATGGTTGAGTGCTGCATTGGTAAATCCAGAGACCTGCATGGATGGATTTGAGGGAACGAGTGGCATTGTCAAGGAACTCGTGTCTGCAGGCATCAGCCAAGTAATATCCATGGTCCGGGAGCTTCTAACAATGGTGGTTGAGTCAGTAAATAACGACGGCGATCACAAGTTCGGAGATGAAAACCAGTTTCCATCGTGGGTTCGACTGGAAGAGAAGAAACTTCTGGAAGCAAATGGAGTTAATGCAGACGTCGTTGTGGCTTCTGATGGAACTGGGAATTTCACGAAGGTGATGGATGCGGTTTTAGCAGCTCCAGATTATAGCATGCGACGTTTCGTTATATACATCAAGAAGGGTGTTTACAGAGAATACGTCGAGATTAAGAAGAAGAAATGGAACCTCGTGATGATCGGAGATGGAATGGACGCTACTGTCATAACCGGTAATCGGAGTTACGTCGACGGATGGACAGCTTTCCGGTCGGCAACTTTTGCATCCAAGCTCGTACCTTTGGGTTTCACTAGCGCTAGCCAACTTCATGCCCAGAGGCTTGAAATAATTCAAATAACTTCTGGATCCAGAGAACTTGATAAGATTTTGGAAGGAGGAATTGAAACAGGGTCAATTACGGAAATATATGGTGAATTCCGTTCTGGAAAAACTCAGCTTTGTCACACACTCTGTGTCACTTGCCAACTTCCATTGGATCAAGGTGGCGGCGAGGGAAAAGCAATGTATATTGACGCAGAAGGTACATTCAGGCCACAAAGACTATTACAAATAGCTGACAGGTTTGGATTGAATGGCGTTGATGTTTTGGAAAATGTAGCATATGCTAGAGCATATAACACTGATCATCAGTCAAGGCTTTTGCTGGAAGCTGCTTCTATGATGGTGGAAACAAGATTTGCTCTTATGATAGTAGACAGTGCTACTGCACTCTACAGAACAGATTTCTCTGGGAGAGGAGAACTTTCAGCCCGCCAGATGCATCTAGCGAAATTTCTTCGGAGCCTTCAGAAGTTAGCAGATGAGTTTGGTGTTGCCGTCGTTATCACAAACCAAGTAGTTGCGCAAGTGGATGGTTCGGCAATCTTTGCAGGGCCTCAAATCAAGCCTATTGGTGGGAATATTATGGCTCATGCTTCTACCACAAGGATTGCGTTGAGGAAGGGCAGAGGGGAGGAGCGCATTTGCAAGGTGATAAGCTCTCCTTGTTTGGCTGAGGCTGAAGCTCGGTTTCAGATTTCAGCCGAAGGTGTTATCGATGTCAAGGACTGA 1644 47.02 MGGAASIFANHLALCLLLVLGWRSLFGVAAAVSPTGERYLNVPSSDFADSLGITVEVIRQVTPIFSQFSNFAGDFRLSTAVSDCLDLLDSSLDDLTWSLSATRNPKAKNNSTGKISSDLKTWLSAALVNPETCMDGFEGTSGIVKELVSAGISQVISMVRELLTMVVESVNNDGDHKFGDENQFPSWVRLEEKKLLEANGVNADVVVASDGTGNFTKVMDAVLAAPDYSMRRFVIYIKKGVYREYVEIKKKKWNLVMIGDGMDATVITGNRSYVDGWTAFRSATFASKLVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGVDVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRIALRKGRGEERICKVISSPCLAEAEARFQISAEGVIDVKD 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6423579 6429914 - BLOR20552 Blo08g00382 64334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00382 547 Pfam Pectinesterase 204 287 IPR000070 GO:0030599|GO:0042545
Blo08g00382 547 Gene3D - 171 296 IPR012334 -
Blo08g00382 547 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 285 547 - -
Blo08g00382 547 SMART AAA_5 327 514 IPR003593 -
Blo08g00382 547 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 170 IPR035513 -
Blo08g00382 547 Gene3D - 305 547 IPR027417 -
Blo08g00382 547 CDD PMEI-like_4 40 167 - -
Blo08g00382 547 Pfam Plant invertase/pectin methylesterase inhibitor 79 153 IPR006501 GO:0004857
Blo08g00382 547 ProSiteProfiles RecA family profile 2. 484 547 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Blo08g00382 547 SUPERFAMILY Pectin lyase-like 201 286 IPR011050 -
Blo08g00382 547 ProSiteProfiles RecA family profile 1. 306 477 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Blo08g00382 547 ProSitePatterns Pectinesterase signature 1. 229 248 IPR018040 -
Blo08g00382 547 SMART PMEI_2 29 165 IPR006501 GO:0004857
Blo08g00382 547 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 165 IPR035513 -
Blo08g00382 547 PANTHER DNA REPAIR PROTEIN RAD51 HOMOLOG A 285 547 - -
Blo08g00382 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 545 IPR027417 -
Blo08g00382 547 CDD Rad51_DMC1_radA 310 542 IPR033925 GO:0003677
Blo08g00382 547 Pfam Rad51 292 544 IPR013632 -
Blo08g00382 547 TIGRFAM recomb_RAD51: DNA repair protein RAD51 285 547 IPR011941 GO:0000150|GO:0000724|GO:0003690|GO:0003697|GO:0008094|GO:1990426
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00234 Blo-Chr7:2936874 Blo08g00382 Blo-Chr8:6423579 5.06E-81 dispersed
Blo08g00382 Blo-Chr8:6423579 Blo17g00654 Blo-Chr17:15447297 6.73E-52 dispersed
Blo14g00150 Blo-Chr14:1147530 Blo08g00382 Blo-Chr8:6423579 7.08E-13 dispersed
Blo14g00555 Blo-Chr14:8304711 Blo08g00382 Blo-Chr8:6423579 5.21E-08 dispersed
Blo08g00382 Blo-Chr8:6423579 Blo06g00502 Blo-Chr6:26918789 2.96E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00382 K04482 - cpap:110825838 506.908