Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00438 ATGAAGACGCCGGCGAATGGCGCCGGAGCTGCATCGGCCCCAAATAGTCTGGAAGGCGAGAAGAAGATCATAAATCCAGAGTTATGGCAAGCGTGCGCCGGACCACTGGTGAACCTCCCGCCGGCGGGGACCCATGTGATGTATTTCCCTCAAGGTCACAGCGAGCAGGTGGCTGCATCTATGAAAAAAGATGCAGATGCTCAAATCCCGAGCTACCCAAATCTTCCCTCGAAGATTCTATGCCTCCTTCACAATGTCACCTTACATGCTGACCCAGAAACGGATGAAGTATATGCTCAAATGACTTTACAACCAGTTTCCTTGTTGGATAAGGATGCATTACTGAGATCCGATCTTGCACTCAAGTCTAATAAGCCACAGCCTGAATTTTTCTGTAAGACATTGACGGCAAGCGATACGAGCACTCATGGAGGATTTTCAGTTCCTCGTCGTGCGGCGGAGAAAATTTTCCCTGCTCTCGATTTCTCCTTGCAGCCACCGGCTCAAGAACTTACGGCAAGGGATTTACATGATAATTTGTGGACGTTTCGTCATATCTATCGCGGACAACCGAAACGCCATTTGCTGACAACTGGTTGGAGCCTGTTCGTCAGTGGAAAGAGGCTTCTTGCTGGTGACTCCGTTTTATTCATCAGGGATGAAAGGCAGCAGCTGCTTCTGGGAATTAGACGGGCTAACAGGCAGCCCACCAACTTATCGTCATCAGTCTTGTCGAGCGATAGTATGCATATTGGGATTCTTGCTGCAGCTGCCCATGCAGCTGCCAACAGTAGCCCCTTCAATGTCTTTTACAATCCAAGGGCAAGTCCTTCGGAATTCGTTATACCTATAGCGAAATACTACAAAGCCGTCTGTGGAAATCAATTATCGCTTGGCATGCGCTTCCGGATGATGTTTGAAACTGAAGATTCCGGAACCAGAAGGTATATGGGCACAATTACAGGCACCAGTGATCTTGATCCCATCAGATGGAAGAACTCTGAATGGCGTAATCTGCAGATTGGGTGGGATGAATCCACTGCTGGAGAGAGGCGAAATCGAGTTTCAATTTGGGAAATCGAACCCGTAATAGCCCCATTTTTCATCTGCCCACCTTCATTCTTGAGATCGAAGCGTCCAAGGCAACCCGGAATGCCAGATGACGAGTCCCATGATATGGATAGCCTGTTTAAGAGGACAATGCCTTGGCTTGGAGATGATGCTACTAGCATGAAGGATTCTCAGGCACTTCCTGGGCTAAGCCTAGTCCAATGGATGAATATGCAGCAAAACCCATCTTCAGCCAACTCAATACAAACAAACTATATTCAACCCTTTTCCAATACCTTGTTACAAAACCTCAATGTAGCACAAATTCCTCCACCGAATAACTTGCAGTTTAACACCCAAAAGTTACCTCAGCAACTTCCACAGTTTGATCAGCTCACTAAACTCCCATCTGGGATTAGCCCTTTAGGATCAGTTGTGCAGATTCAGCAACAGTCAAGCGATGTTTTTCTGCAGCCTATGCAAAATTTGGTCAATCAAGGCCTACCTTCCAGCCAAGCTCCGCTCCAAATACTGAAACCACAAGCACTGGCTCAGAGCAACTGTAATAATATTCAGCAGCAGCCGTCTTCTCAGAACCTTCATTTTCAAAGAAATCTTCATCAAAACCTGCAAATGCAGAATGTTATTGGTCAGACTGATCAGCAGAATACTATTCAATCTCACCTCCTTGATCAAGCAAATCAGCAGCTACCAATATCCGAAAATCAGGCTAATCTTCAACTCTTGCAGAGGCAACAACTGTCTCTTCAATCACAGCAATCTGCACTACAGCAGCAAGCTCAACTTATTCAGCTCCATGATCAGCAGAGACAGCTTTTAGATGTTTCCCAGAGCTTCTCCACTCCCACTCCATCCCTACTTCCCCAATCGAACCAATTTAAGACGGCTAACCTGGTGAATAATCAGTTTTCTCTGCCAACCCTTCTGCCAACTGCCCCCCAACAAACAGGGGTGTTGAGTGATATGTCTGGTCGGATGAAACTTTGCCCCACTCCAACGACCAATCATATCTCTGCAGCTTCTTGCAGTGTAGCAAATGGAGCTGCTGGATTGGGTCAATCTGTGATTACCGACGAAGTTCCATCTTGCTCCACTTCACCTTCGACCAATAACTACCCAGATGTGGTTCAACCATTAATGAATGGCCGGATTCGTCGTTTTGGACTTGAAGAGGAAATGGCTCAGTCTGCATCCAAAATCTTGAGTCCTAACTCGATTAAAGGTTTGCAGCCAAAACCTGAAGTGAAGTCTTCGATTATGCTTACAAAAAATCAAGAACAAGGCTTGTTTTCCCAGCAAATGTTCCTAAATGGCGCTACTCCCCAAACGGATTTCTTGGACTCATCATCTTCAACTACCGCAGTCTGCCTTTCGCAGAACGAAGCTCGTTTGCAGCAGAATAACTGGATGTCATTCAATTCTCAACCGTTGCTGAGAAACACAAGTCAAGAGCTTGAAGCTCCTGTCGATCAGCACCATAATTTCTCATTTGGGCCAAACATGGATGGTCAAGTGGAAGAACAGTTAATAATCGATCCTTTATCGTACAAGGGTGTGACAGGAATCAGCAAGGATTTCTCAAATATTCTGTCCTCCAATGGTGCGACCGCAATATATGAGAGTCCAGAAGACCCTCAAAAGGAGATTGCTTCTCCAGTAGCTTCTCAGTCATTTGGAGTTCCAGATATGGCGTTTAATTCCATTGATTCCACAATAAACGATAGTAGTTTCTTAAGCAGAAGTCAGTGGGCACCTCCTCCACAAATTCAAAGAAGGAGGACATACACCAAGGTCTACAAGCGTGGAGCTGTTGGAAGATCGATTGATATGACGAGATATTTGGGTTATGACGAACTCAAACAAGATCTTGCTCGAAGGTTTGGCATTGAAGGCCAATTGGAGGACCGCCAGAGAATCGGATGGAAACTTGTGTATGTGGATCATGAGAATGACGTTTTACTTGTGGGGGATGATCCTTGGGAGGAGTTTGTGAACTGTGTGATGTGCATTAAGATCTTATCCCCTCAAGAAGTACAGCAAATGAGTTTGGATGGAGATATGGGAAATGGGGTCCTCCAAAATCAAGCATGCAGCAGCTCTGACTGTATAAACACTTGA 3189 45.75 MKTPANGAGAASAPNSLEGEKKIINPELWQACAGPLVNLPPAGTHVMYFPQGHSEQVAASMKKDADAQIPSYPNLPSKILCLLHNVTLHADPETDEVYAQMTLQPVSLLDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSLQPPAQELTARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDERQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANSSPFNVFYNPRASPSEFVIPIAKYYKAVCGNQLSLGMRFRMMFETEDSGTRRYMGTITGTSDLDPIRWKNSEWRNLQIGWDESTAGERRNRVSIWEIEPVIAPFFICPPSFLRSKRPRQPGMPDDESHDMDSLFKRTMPWLGDDATSMKDSQALPGLSLVQWMNMQQNPSSANSIQTNYIQPFSNTLLQNLNVAQIPPPNNLQFNTQKLPQQLPQFDQLTKLPSGISPLGSVVQIQQQSSDVFLQPMQNLVNQGLPSSQAPLQILKPQALAQSNCNNIQQQPSSQNLHFQRNLHQNLQMQNVIGQTDQQNTIQSHLLDQANQQLPISENQANLQLLQRQQLSLQSQQSALQQQAQLIQLHDQQRQLLDVSQSFSTPTPSLLPQSNQFKTANLVNNQFSLPTLLPTAPQQTGVLSDMSGRMKLCPTPTTNHISAASCSVANGAAGLGQSVITDEVPSCSTSPSTNNYPDVVQPLMNGRIRRFGLEEEMAQSASKILSPNSIKGLQPKPEVKSSIMLTKNQEQGLFSQQMFLNGATPQTDFLDSSSSTTAVCLSQNEARLQQNNWMSFNSQPLLRNTSQELEAPVDQHHNFSFGPNMDGQVEEQLIIDPLSYKGVTGISKDFSNILSSNGATAIYESPEDPQKEIASPVASQSFGVPDMAFNSIDSTINDSSFLSRSQWAPPPQIQRRRTYTKVYKRGAVGRSIDMTRYLGYDELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVMCIKILSPQEVQQMSLDGDMGNGVLQNQACSSSDCINT 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8805932 8811681 + BLOR20608 Blo08g00438 64390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00438 1062 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Blo08g00438 1062 CDD B3_DNA 130 222 IPR003340 GO:0003677
Blo08g00438 1062 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Blo08g00438 1062 SMART B3_2 131 233 IPR003340 GO:0003677
Blo08g00438 1062 Coils Coil 596 616 - -
Blo08g00438 1062 SUPERFAMILY CAD & PB1 domains 954 1024 - -
Blo08g00438 1062 SUPERFAMILY DNA-binding pseudobarrel domain 120 260 IPR015300 -
Blo08g00438 1062 Gene3D - 295 365 - -
Blo08g00438 1062 Pfam AUX/IAA family 949 1035 IPR033389 -
Blo08g00438 1062 ProSiteProfiles PB1 domain profile. 950 1034 IPR000270 GO:0005515
Blo08g00438 1062 PANTHER AUXIN RESPONSE FACTOR 1 1057 - -
Blo08g00438 1062 Gene3D - 129 232 IPR015300 -
Blo08g00438 1062 Gene3D - 946 1039 - -
Blo08g00438 1062 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Blo08g00438 1062 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1057 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00578 Blo-Chr1:6319798 Blo08g00438 Blo-Chr8:8805932 0 dispersed
Blo01g01589 Blo-Chr1:55737023 Blo08g00438 Blo-Chr8:8805932 7.47E-160 dispersed
Blo08g00438 Blo-Chr8:8805932 Blo12g00892 Blo-Chr12:27099990 1.47E-34 dispersed
Blo16g00290 Blo-Chr16:6964416 Blo08g00438 Blo-Chr8:8805932 2.08E-16 dispersed
Blo18g00211 Blo-Chr18:2065513 Blo08g00438 Blo-Chr8:8805932 5.86E-56 dispersed
Blo08g00438 Blo-Chr8:8805932 Blo16g00853 Blo-Chr16:35921520 2.49E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12735 PF02309 AUX_IAA 8.50E-06 CL0072 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00438 - - qsu:111988787 1398.26