Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00564 ATGAACCAACTAATCCCAAAAAATTTCTCAACCTTTCTGCTTTGGACGGTTTCACAACAGACGTCGACGGCAAAGGGTGCAGCGGGTCTAATCGATGTTCGTCAACGAAAGCAGCTCGACAGGCAACGAGGGCAGTGGTCAGACAAGAGACTGAAAACCAACGCCGGTGACTCCCTTTCTGGACGGCGGCTTCTCTGTATGCGAGTGGTTGGCGAACTGATCGGCGGACGGACGGCAACGAGGAGACAGAGAAGGACAACTCTTCCTCGGACGGCAGACTCTATCCCAGTCGGTGCGGCTATTTCTGTTCTTGCTGTAAAATTGGGAATGGATTGGATCTCTGTTTGCAAGCCTAGAAATATTTTGTTTTCACTTCTTCCCCCGAAGGCTGCTTGCTTTGTTTTCGAAGTGCAAAAATCGCTGCAAACTTCAATCTACTCTTTTAATATGCTTTATCTTCCTCTTCCTTTTCCATTTTCTCATCTTCAAGTGGTTGCTACGACAAATAAAGAAGTCGATTCCCATATCCCTAACTATCCAACCTTGCCACCGCAACTAATTTGTCAACTTCACAATGTAACCATGCATGCTGATGTCGAAACAGATGAAGTGTATGCTCAAATGACATTGCAGCCACTGAGCCCCCAAGAGCAAAAGGAAGCCTATCATCCGGCTGAGATGGGTGCCCCAAGCAAACAGCCAACCAACTATTTTTGTAAGACATTGACAGCCAGTGACACAAGTACTCATGGAGGGTTTTCTGTGCCTCGACGAGCAGCGGAGAAAGTGTTTCCTCCATTGGACTTCTCCCAGCAGCCCCCAGCCCAGGAGTTGATTGCGAGAGATCTTCATGATAATGAATGGAAATTTAGACACATATTTCGTGGTCAGCCCAAAAGGCACCTCCTAACAACTGGATGGAGTGTGTTTGTGAGTGCTAAACGGCTTGTTGCTGGCGATTCCGTGCTCTTCATATGGAATGAGAAAAACCTGTTGCTGCTTGGAATTCGGCGTGCTACTCGACCACAGACAGTGATGCCTTCATCAGTTTTATCAAGTGACAGCATGCACTTAGGCCTTTTTGCAGCTGCTGCGCATGCTGCTGCCACAAATAGCCGTTTCTCGATATTTTACAATCCGAGGGCTAGCCCATCTGAATTTGTGATACCCTTGGCAAAGTATGTGAAAGCAGCCTATCATACTCGTGTCTCCGTTGGCATGCGGTTTAGAATGCTTTTTGAAACAGAAGAATCAAGTGTCCGGCGCTACATGGGCACAATCACGGGCATTAGTGATCTAGATCCTGTTCGCTGGCGAAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCGACCGGAGAGAGACAACCAAGAGTGTCTCTATGGGAAATTGAGCCATTAACAACGTTCCCAATGTATCCATCTCCATTTCCACTTCGGCTCAAGCGACCATGGCCCACTGGACTGCCTGCTTTCCATGGGATTAAAGAGGTTGAAGTGGGACTAAATTCTCCATTAATGTGGCTACGAGGAGATGCTGGGGATCGGGGAATGCAAGCTTTGAACTTTCCCGGGGTTGGAGTGTCACCATGGATGCAGCCAAGACTCGATGCTTCCATGCTTGGCTTGCAATCTGATATGTATCAATCCATGGCTGCTGCTGCTCTGCAGGAAATGAGAGCTTCTGACCCATCCAAACTTCTTCAATTTCAGCAAACCCAGAGCGCCCTGATTCAAACTCAGATGCTGCAAAATTCTCAACCTCAACATGCTCTTTTTCATTCCGTTCAACCAAACCCACATCATACTCAATCCCAATCTCAAACTCAGTCGCATGTCCTTCAGCAGCAGATGCATCAACAGCAGCCGTTCAGAAATCAACATCAACAGCAACTGGTCGATCACCAAATGCCAAGCACTATTTCAACGATCTCTCAGTTTTTGACGACTTCTCAACCCTCGTCATCATCAATGCAAACACTCCCATCAATATGCTCGCAACAGAGCTTCTCCGACTCAAATGTTAACCCAGTGACTAGCCCTGTTATTTCGCCATTGGACAGCCTCTTATGCTCATTTCCTTCGGATGAATCAACTCAGCAGCCCAATCTGGCTAGACCCAACTCGTTGATATCTTCCTCGTGGCCTTCAAAGCGAGCTGCAGTTGACCCTCTTCTCTCAGGCACTCAATTTCTCATGTCCCATTTGGAACATTTGGGGACATCTCAAGCTAATGTGTCCCCACATTCCATTTCGTTGCCGCCATTTCCCGTTCGAGATTGCACAATTGACCAAGGAGGCACCGATCCTCAAGGCCGGCTTCTATTTGGTGTTAATATAGACCATTCCTCTCTTCTAATGCAAAATGGAATGTCAAGTCTCAGGGGAGTTGGCAGTGAGGGTGATTCATCTACTCTTTCCTTTCCTTCCAACTACATGAGCTCCGCGGCTACCGATTTCTCGGCTAACCCAACTATGACACCTTCCTGTTGCATTGATGAATCGGGTTTCATGCAGCCCTCGGAAAATGTGGGCCAAGTAAACCCACCAATGAGAACCTTTGTTAAGGTTTACAAGTCAGGGTCCTGTGGTAGGTCGCTGGATATTACCAAATTCAGCAGTTACCATGAGCTACGCAGTGAGCTTGCTCGAATGTTTGGGATTGAAGGCGAGCTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATGTTCTTCTTCTGGGCGATGGGCCCTGGCCGGAGTTTGTGAATAGCGTGTGGTGCATAAAAATTCTGTCGCCCCAAGAAGTGCAGGAGATGGGAAAACGAGGCCTGGAGCTTTTGAACTCGGTGCCGATTCAGAGGCTCTCCAACAGCGGTTGTGATAACTACATAGCTCGGCAGGACTCGAGAAACTTGGTCTCGGGGATCACTTCGTGGCTTGCGATGGAGGTAGGGTTTTGGTCATTGGGAGAGTCAGTTGGGGTCCGGTCCAGTTGGTCCACTGGAGCTGGTTCTTCCAGTTGCTCATCTGGCAAGTTTTCCACGCGGCAATTTTGGATGAGGATTTATAGTACTGCTCTCGGGTGTGTTTTGGTGAAGGTGCTCTCGGGTCCTGTAAAGTCAGAAGGAAATGGGCTACTGTTTTGGGAAGAAACTCTAAGTGATAACTCATTAAAGCCAAGGACTTCAGGTATTAACTTCGAGGATGATTCTATTTGGGATGTTGTCCCAACGGATAAGGAGCAACCTGTGCATGTCTTGACTTGGGACACACGTGAATGTTATGAGCTTCATCAGACGGGAATTTGTCTTCCCGGCATCCCAAACGTGTAA 3342 48.06 MNQLIPKNFSTFLLWTVSQQTSTAKGAAGLIDVRQRKQLDRQRGQWSDKRLKTNAGDSLSGRRLLCMRVVGELIGGRTATRRQRRTTLPRTADSIPVGAAISVLAVKLGMDWISVCKPRNILFSLLPPKAACFVFEVQKSLQTSIYSFNMLYLPLPFPFSHLQVVATTNKEVDSHIPNYPTLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKEAYHPAEMGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNLLLLGIRRATRPQTVMPSSVLSSDSMHLGLFAAAAHAAATNSRFSIFYNPRASPSEFVIPLAKYVKAAYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWRNSHWRSVKVGWDESTGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPAFHGIKEVEVGLNSPLMWLRGDAGDRGMQALNFPGVGVSPWMQPRLDASMLGLQSDMYQSMAAAALQEMRASDPSKLLQFQQTQSALIQTQMLQNSQPQHALFHSVQPNPHHTQSQSQTQSHVLQQQMHQQQPFRNQHQQQLVDHQMPSTISTISQFLTTSQPSSSSMQTLPSICSQQSFSDSNVNPVTSPVISPLDSLLCSFPSDESTQQPNLARPNSLISSSWPSKRAAVDPLLSGTQFLMSHLEHLGTSQANVSPHSISLPPFPVRDCTIDQGGTDPQGRLLFGVNIDHSSLLMQNGMSSLRGVGSEGDSSTLSFPSNYMSSAATDFSANPTMTPSCCIDESGFMQPSENVGQVNPPMRTFVKVYKSGSCGRSLDITKFSSYHELRSELARMFGIEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNSGCDNYIARQDSRNLVSGITSWLAMEVGFWSLGESVGVRSSWSTGAGSSSCSSGKFSTRQFWMRIYSTALGCVLVKVLSGPVKSEGNGLLFWEETLSDNSLKPRTSGINFEDDSIWDVVPTDKEQPVHVLTWDTRECYELHQTGICLPGIPNV 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18894680 18915708 - BLOR20734 Blo08g00564 64516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00564 1113 Coils Coil 1112 1113 - -
Blo08g00564 1113 ProSiteProfiles B3 DNA-binding domain profile. 238 340 IPR003340 GO:0003677
Blo08g00564 1113 CDD B3_DNA 237 333 IPR003340 GO:0003677
Blo08g00564 1113 Pfam AUX/IAA family 848 943 IPR033389 -
Blo08g00564 1113 SUPERFAMILY CAD & PB1 domains 845 929 - -
Blo08g00564 1113 Gene3D - 850 943 - -
Blo08g00564 1113 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 158 966 IPR044835 GO:0003677|GO:0006355|GO:0009725
Blo08g00564 1113 Gene3D - 402 473 - -
Blo08g00564 1113 PANTHER AUXIN RESPONSE FACTOR 6 158 966 - -
Blo08g00564 1113 SUPERFAMILY DNA-binding pseudobarrel domain 223 367 IPR015300 -
Blo08g00564 1113 SMART B3_2 238 340 IPR003340 GO:0003677
Blo08g00564 1113 ProSiteProfiles PB1 domain profile. 854 938 IPR000270 GO:0005515
Blo08g00564 1113 Pfam Auxin response factor 364 447 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Blo08g00564 1113 MobiDBLite consensus disorder prediction 595 636 - -
Blo08g00564 1113 Pfam B3 DNA binding domain 238 339 IPR003340 GO:0003677
Blo08g00564 1113 Gene3D - 236 340 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo08g00564 Blo11g00225 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01064 Blo-Chr1:36265351 Blo08g00564 Blo-Chr8:18894680 2.30E-26 dispersed
Blo03g00549 Blo-Chr3:21504844 Blo08g00564 Blo-Chr8:18894680 3.39E-30 dispersed
Blo08g00564 Blo-Chr8:18894680 Blo10g00229 Blo-Chr10:3069226 0 dispersed
Blo12g00026 Blo-Chr12:1788378 Blo08g00564 Blo-Chr8:18894680 7.47E-25 dispersed
Blo16g00532 Blo-Chr16:21925002 Blo08g00564 Blo-Chr8:18894680 2.27E-27 dispersed
Blo18g00745 Blo-Chr18:20149980 Blo08g00564 Blo-Chr8:18894680 6.20E-27 dispersed
Blo08g00564 Blo-Chr8:18894680 Blo11g00372 Blo-Chr11:3154567 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12741 PF02309 AUX_IAA 4.70E-07 CL0072 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00564 - - jre:109011079 1273.46