Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00600 ATGGACAAGAAAGGGAGTGTATTGATGCATAGGTACGAGCTCGGAAGATTGCTCGGACAAGGTACATTTGCAAAGGTTTACTATGCTAGAAACTTGAAGTCCGGCCAAGGGGTTGCCATAAAGATTATCGACAAGGAAAAGGTTTTACGAATTGGTCTGATCGATCAAATCAAGCGCGAAATCTCCGTTATGCGCCTCGTAAGGCACCCGAATGTCGTAAAACTTTACGAGGTGATGGCGAGCAAAACCAAGATTTATTTTGTGATGGAATATGTAAAGGGTGGTGAGCTTTTCAACAGGGTTGCCAAAGGGAAGCTCAAGGAAAGTCTTGCCCATCACTATTTCCAACAATTGATCGGAGCCGTCGATTACTGTCATAGCCGAGGCGTATATCACCGCGATCTCAAGCCAGAAAATCTTCTTGTCGATGACAATGGGAATCTCAAAGTCTCGGATTTCGGGTTGAGTGCGTTGATAGAGTCGAGGAGGAAAGACGGTCTTCTCCACACAACCTGTGGAACGCCTGCATACGTAGCGCCAGAAGTGATCAATAAGAGAGGCTACGATGGAGCCAAAGCCGATATGTGGTCATGTGGGGTCATCCTCTTCGTCTTATTGGCTGGTTTTCTGCCGTTCCATGATTCTAATTTGATGGAGATGTATCGAAAAAGTAGCCGGGGAGATTTCAAATGTCCGCTATGGTTTCCTTCAGAAGCTCGAAAGCTTCTCTCGAAGATCCTCGATCCTAATCCAAGCTCAAGAATAAACGTTGCCAAGCTCATGGAAAATGTCTGGTTCAAGAAAGGACTGAAACAAATTAAACCACATAAATTAACAAAGGACGAAGAAGCAAATCTCATTACAGACGATCTTCCAATCACCTTTCTCGAATCTCCTGGGAGTTCTCTAAACGGGAAGAAAAGCACAAGCCCGGTGAGACCGCTTTGCTTCAACGCCTTTGATATCATCTCTCTTTCGTCCGGATTCGATCTTTCTGGTTTGTTCGAAAAGGACGCAAATCAGAGATCGCAGGCGAGGTTTACGACGACAGAACCTCCATCCACAATTGTATCAAAACTCGAGGAGATAGCCGAGACGGAGAGGTTCAAGTTCATGAAAAGGGAAGGGAAGGTGATGTTGAAGGACAGGAAGGAAGGAAGAAAAGGGCAGCTAGCCATCGACGTAGATATTTACGAAGTTACCCCTTCATTTTACGTCGTGGAGGTGATGAAAAGCGCAGGAGATACACTGGAATATAAGCAATTCTACGACCAAGACTTGAGGCCCTCGCTAGAAGATATCTGTATGGACATGGGAAGCAGGGGAGAAGGCACAACAGCAGTAACAAACAGCATAGACACGGTTTAA 1368 45.54 MDKKGSVLMHRYELGRLLGQGTFAKVYYARNLKSGQGVAIKIIDKEKVLRIGLIDQIKREISVMRLVRHPNVVKLYEVMASKTKIYFVMEYVKGGELFNRVAKGKLKESLAHHYFQQLIGAVDYCHSRGVYHRDLKPENLLVDDNGNLKVSDFGLSALIESRRKDGLLHTTCGTPAYVAPEVINKRGYDGAKADMWSCGVILFVLLAGFLPFHDSNLMEMYRKSSRGDFKCPLWFPSEARKLLSKILDPNPSSRINVAKLMENVWFKKGLKQIKPHKLTKDEEANLITDDLPITFLESPGSSLNGKKSTSPVRPLCFNAFDIISLSSGFDLSGLFEKDANQRSQARFTTTEPPSTIVSKLEEIAETERFKFMKREGKVMLKDRKEGRKGQLAIDVDIYEVTPSFYVVEVMKSAGDTLEYKQFYDQDLRPSLEDICMDMGSRGEGTTAVTNSIDTV 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21849200 21850567 + BLOR20770 Blo08g00600 64552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00600 455 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Blo08g00600 455 Gene3D Kinase associated domain 1, KA1 312 436 - -
Blo08g00600 455 Gene3D Transferase(Phosphotransferase) domain 1 3 299 - -
Blo08g00600 455 PANTHER - 2 441 - -
Blo08g00600 455 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo08g00600 455 Pfam NAF domain 314 373 IPR004041 GO:0007165
Blo08g00600 455 CDD CIPK_C 318 431 - -
Blo08g00600 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Blo08g00600 455 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo08g00600 455 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Blo08g00600 455 SUPERFAMILY Protein kinase-like (PK-like) 8 282 IPR011009 -
Blo08g00600 455 CDD STKc_SnRK3 11 265 - -
Blo08g00600 455 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo08g00600 455 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 2 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00526 Blo-Chr8:14915343 Blo08g00600 Blo-Chr8:21849200 0 dispersed
Blo08g00600 Blo-Chr8:21849200 Blo11g00700 Blo-Chr11:8260763 0 dispersed
Blo08g00600 Blo-Chr8:21849200 Blo08g00601 Blo-Chr8:21851254 5.22E-179 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84453 PF00069 Pkinase 2.60E-73 CL0016 Blo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00600 K07198 - vvi:100258329 649.432