Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00626 ATGCGGCCCGGGTTCGCGTCGACTCTGGCCGGCGATGTGTTCGGCCACGGGATTGAGGTAAGCCTACCCGATTCTATCCTCCTTTACATTCCAGATCTAGCCAGAGGTCCGATTCATGAGATGAATCGGAGGTACTTCACGTTGGCAGGGCCGATTTCCGTTGAAGCGGTATCGGAGTTGAAGAACTTGTATGCTGAATTTCGACAGACGTTAGGTAACGAGGGAGTTATGCCAGCAATTAAGGAAGAGGACATTCCGGTGGAGCCTGCGGTTGGCCCATTTCAAGGTAATGTTGTATTTGGCGGGAAACTTGGCGCCAAAGAAGAGCTAGGACTAGCAAAGGCTGACTCTCCTTCCTCCTTCCCCCTTCCCTCATCCCTTCCTCGTTTCATCGCTTCTGCGTTCGTAATGGAGAGCTTCGGAGGTGGTGGTTATTTCGTCGATGACAAGGCTGCTAGTGTCGAGAACATTTTCCTCGACTTTCTCAACAACTTTCGTCTCGGTGGCCGTTCAGGGGAAGCCTATTACGATGCTGAGATTGAAGCCATGAAGGCCTCTGAATCCACCACCATGTTCATCGATTTCTCACACCTCATCCGCTTCAACGATATCCTTCACGTTGCCATCTCTGAAGAATACTTGAGGTTTGAACGCTACTTGAAGAATGCTTGCAAGCGATTCGTGATGGAAAAGAAGCCCACCTTTATAGCTGATGAAAACCTCGGCAAGGACATCAATGTTGCTTTTTTTAACATCCCCGTTTGTAAGAGGTTGAGGGAGTTGACTACAGCAGAAATTGGCAAACTAGTATCAGTGACAGGGGTTGTAACTCGTACAAGTGAGGTTCGACCAGAACTTATCCAGGGGACCTTTAAGTGCCTTATATGTGGAGGTGTGATAAAGAACATTGAACAGCAATTCAAGTATACAGAGCCAACAATTTGCATGAGTCCTACATGTACAAATAGAACGAAATGGGCATTATTGCGGCAAGAGAGCAAATTTGCTGACTGGCAAAGGGTACGAATGCAAGAGACTTCCAAGGAGATACCAGCAGGATCTCTTCCTCGATCATTGGATGTAATTCTTCGTCATGAGATGGTCGAGCGAGCCCGGGCAGGAGACACGGTTGTTTTCACGGGTACAGTAGTTGTGATACCAGACATACTTGCACTAGCCTCTCCTGGTGAAAGGGCAGAAACCCGACGTGAAGGTTCCCAACGACAAAGTTCTACTGTTGGACATGAAGGAATGAGAGGCCTTAAAGCTCTTGGAGTGAGAGACCTGTCATATCGACTAGCTTTCATTGCCAATTCAGTTCAAATTGCTGAAGGTAGGAGAGACACTGATATCAGGAATAGGAAAAGGGAAAGTGATGAAGAACAACAGCAATTTACAGCTGAAGAGCTTGATGAAGTCCAAAGGATGAGGAATACGCCAGATTTCTTAAATAAACTCGTTGAGAGTATTGCACCAACAGTCTTTGGTCACCAAGATATCAAGCGAGCTATCTTGCTTATGCTTCTAGGTGGAGTTCACAAGTATACTCATGAAGGCATCAATCTGAGAGGAGATATTAATGTTTGCATCGTAGGAGATCCAAGCTGTGCAAAATCTCAATTCCTGAAGTACACTTCGGGTATAGTTCCAAGATCTGTTTATACGTCTGGAAAATCCTCTTCGGCAGCAGGGTTGACTGCAACTGTAGCAAAAGAACCTGAAACTGGGGAATTTTGTATTGAGGCTGGTGCTTTAATGCTTGCTGACAATGGGATTTGTTGTATTGATGAATTTGATAAAATGGATATTAGGGATCAGGTTGCAATTCATGAAGCCATGGAACAGCAAACTATAAGCATTACCAAAGCTGGAATACAAGCAACACTGAATGCTCGTACATCAATTCTTGCTGCTGCTAATCCTGCAGGTGGACGATACGACAAATCTAAACCATTGAAGTATAACGTGGCTCTTCCACCTGCCATTCTCTCAAGGTTTGACCTGGTATACGTTATGATTGATGATCCAGATGATCAAACAGACTACCACATTGCTCACCACATCGTCAGAGTACATCAGAAGCATGAAAATGCTCTTTCTCCTGCATTTTCTACTGCAGAGCTTAAGAGATATATTGCATATGCAAAAACTTTAAAACCCAAGCTAAGCTCAGATGCTAGGAAATTGTTGGTCGAATCTTATGTTGCTTTACGTAGAGGAGATACCACTCCTGGTAGTAGAGTTGCGTATCGCATGACTGTTAGACAACTTGAGGCATTGATCAGACTATCGGAAGCCATTACTCGAAGTTATTTGGAAACTTTGGTATGTTTTGACAAATTTCATTCACTATATCTTGAACTTTGTCGTCTCCCATTCAGTGTGGAGTCCAGTGAGATTGATCTCTCGGAGTTTCAAGAAAAAAACAATGTTGGTGACAATAATGTAGATAGTGCGGATGGTAATGCTAACCAAGATGATTCTCAACCAAGTAATGATCCAGTTTCAGGAAACGGTGCAGATCGAGAAGGAAAGAAACTTGTTATAAGTGATGAATATTTTCAGCGGATCACCCAAGCCCTCGTTATGCACCTTAGGCAGCATGAAGAAACTGTAATGCAAGAAGGAACTGGTCTGGCAGGAATGAGACAGAGAGACTTGATTAAATGGTACGTGGATCAGCAGCATGCGAAAAATAAATATAGCTCCGAGGTGGAGGTTATAAACGAAGTGTCTAAAATTAAAGCTATTATTGAGAGTTTAATACGAAGGGAAGGGCATTTGATAGTGGTGGACGAGGGCAGGCCAGTTACAGAGGGTGGAGTTGCAGGACAATCAAGTAGAAATGACAGAATTTTAGCTGTTGCTCCCAACTATGTAATTGATTAA 2889 44.03 MRPGFASTLAGDVFGHGIEVSLPDSILLYIPDLARGPIHEMNRRYFTLAGPISVEAVSELKNLYAEFRQTLGNEGVMPAIKEEDIPVEPAVGPFQGNVVFGGKLGAKEELGLAKADSPSSFPLPSSLPRFIASAFVMESFGGGGYFVDDKAASVENIFLDFLNNFRLGGRSGEAYYDAEIEAMKASESTTMFIDFSHLIRFNDILHVAISEEYLRFERYLKNACKRFVMEKKPTFIADENLGKDINVAFFNIPVCKRLRELTTAEIGKLVSVTGVVTRTSEVRPELIQGTFKCLICGGVIKNIEQQFKYTEPTICMSPTCTNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVVFTGTVVVIPDILALASPGERAETRREGSQRQSSTVGHEGMRGLKALGVRDLSYRLAFIANSVQIAEGRRDTDIRNRKRESDEEQQQFTAEELDEVQRMRNTPDFLNKLVESIAPTVFGHQDIKRAILLMLLGGVHKYTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHENALSPAFSTAELKRYIAYAKTLKPKLSSDARKLLVESYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAITRSYLETLVCFDKFHSLYLELCRLPFSVESSEIDLSEFQEKNNVGDNNVDSADGNANQDDSQPSNDPVSGNGADREGKKLVISDEYFQRITQALVMHLRQHEETVMQEGTGLAGMRQRDLIKWYVDQQHAKNKYSSEVEVINEVSKIKAIIESLIRREGHLIVVDEGRPVTEGGVAGQSSRNDRILAVAPNYVID 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24697458 24710396 - BLOR20796 Blo08g00626 64578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00626 962 CDD MCM6 485 776 - -
Blo08g00626 962 ProSiteProfiles MCM family domain profile. 482 688 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo08g00626 962 Pfam MCM OB domain 258 386 IPR033762 -
Blo08g00626 962 SUPERFAMILY Nucleic acid-binding proteins 158 388 IPR012340 -
Blo08g00626 962 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 147 915 IPR031327 GO:0003677|GO:0005524|GO:0032508
Blo08g00626 962 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 417 438 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Blo08g00626 962 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 358 369 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Blo08g00626 962 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 255 267 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Blo08g00626 962 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 305 322 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Blo08g00626 962 Gene3D - 285 336 - -
Blo08g00626 962 Gene3D - 258 386 IPR012340 -
Blo08g00626 962 MobiDBLite consensus disorder prediction 806 836 - -
Blo08g00626 962 MobiDBLite consensus disorder prediction 396 416 - -
Blo08g00626 962 Pfam MCM6 C-terminal winged-helix domain 845 961 IPR041024 -
Blo08g00626 962 ProSitePatterns MCM family signature. 591 599 IPR018525 GO:0003677|GO:0005524|GO:0006260
Blo08g00626 962 Pfam MCM N-terminal domain 157 251 IPR027925 -
Blo08g00626 962 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 147 915 - -
Blo08g00626 962 Pfam MCM P-loop domain 470 692 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo08g00626 962 Gene3D - 843 962 - -
Blo08g00626 962 PRINTS Mini-chromosome maintenance (MCM) protein family signature 662 670 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo08g00626 962 PRINTS Mini-chromosome maintenance (MCM) protein family signature 583 597 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo08g00626 962 PRINTS Mini-chromosome maintenance (MCM) protein family signature 611 624 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo08g00626 962 PRINTS Mini-chromosome maintenance (MCM) protein family signature 523 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo08g00626 962 PRINTS Mini-chromosome maintenance (MCM) protein family signature 635 647 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo08g00626 962 SMART mcm 254 794 IPR031327 GO:0003677|GO:0005524|GO:0032508
Blo08g00626 962 Gene3D - 460 780 IPR027417 -
Blo08g00626 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 769 IPR027417 -
Blo08g00626 962 Pfam MCM AAA-lid domain 707 776 IPR041562 -
Blo08g00626 962 Gene3D - 146 254 - -
Blo08g00626 962 MobiDBLite consensus disorder prediction 806 842 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00626 Blo-Chr8:24697458 Blo10g00430 Blo-Chr10:7793506 4.06E-109 dispersed
Blo08g00626 Blo-Chr8:24697458 Blo17g00098 Blo-Chr17:774926 3.04E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00626 K02542 - jre:108993888 1301.96