Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00642 ATGGTCTTCCTTCAGGTCCCAGTCCCATCCCTCGAAGCTTCTTCCCTTTCCCTCTCCAGTCTCCACTCCCTCAGAGCAGAGCACCTGGTTGGCCCTTATCTCAACACAATCTGCCCCTCGGATCTTCCTCGTATCCCTTCCTATCTCCCTCCCGGAGTTTCCGCGAACGAGCTGCGGCAGTCTCGCGTTACCGTCTATCTATTCGCTACGCTGCCTCTCGCTGGTCATAGCACGACTGCACTCCACAGTCCTTGGGTAACCTATATCTTGATCATTTCTAGCTTATCTCCCTCTTCTTTTGGGAGGTTCAGTGTGCTTTCTCTTCTTTTTATAATACAAATGGCAGATAATCATGAAACGGATAAGAACATTGAGATATGGAAGATTAAGAAATTAATCAAGGCTTTGGAATCTGCTCGAGGTAATGGTACCAGCATGATATCTCTTATAATGCCTCCCCGTGATCAGATATCACGAGTTACTAAGATGCTTGGTGACGAATATGGAACTGCTTCAAACATCAAAAGCAGAGTCAACCGACAATCTGTCTTAGGTGCCATTACCTCTGCTCAGCAGAGGTTGAAACTTTATAACAAGGTTCCTCCCAATGGATTAGTTCTTTATACTGGAACAATTGTCACTGATGATGGCAAGGAAAAGAAGGTTACCATCGATTTTGAGCCATTCAAGCCTATAAATGCATCTTTGTATCTCTGTGATAACAAGTTTCACACAGAAGCTCTAAATGAGCTTTTAGAATCTGATGATAAGTTTGGTTTTATTGTCATGGATGGAAATGGCACACTGTTTGGCACGTTAAGTGGTAACACTCGAGAGGTCCTTCACAAATTTACGGTTGATTTACCAAAGAAACATGGAAGAGGTGGGCAGTCAGCATTACGTTTTGCTCGTCTCCGGATGGAAAAGCGACACAACTATGTGAGAAAAACCGCAGAGCTTGCCACTCAGTTCTTCATCAATCCAGCTACCAGTCAGCCTAATGTTGCTGGACTAATTTTGGCTGGTTCAGCCGACTTCAAGACTGAGCTCAGCCAATCTGATATGTTTGACCCTCGTTTACAAGCAAAAATATTGAATGTGGTTGATGTTTCATATGGAGGTGAAAATGGTTTTAATCAGGCTATTGAATTGTCGTCAGAAATCCTATCAAATGTGAAGTTCATACAGGAGAAACGGTTGATCGGAAAATACTTTGAAGAGATCAGTCAGGATACAGGAAAATATGTTTTTGGAGTGGATGACACTTTGAAGGCTCTGGAAATGGGTGCGATAGAGACGCTCATCGTGTGGGAAAATCTAGAGATTAACAGAAATGTGCTTAAAAACAGCGTTACAGGCGAGATTGTAATAAAACATTTGAACAAGGAGCAAGAGGCCAATCAGAGCAACTTCCGGGACCCAGCTACCTCAGCTGAGCTGGAAGTTCAGGAAAAGACGCCGCTGCTCGAGTGGTTTGCAAATGAGTACAAGAGGTTTGGTTGTACACTTGAATTTGTGACCAATAAATCTCAAGAAGGGTCACAATTTTGCCGTGGATTTGGTGGAATCGGAGGTATTCTACGCTACCAGCTTGACATAAGATCATTTGACGAGTTATCTGATGATGGGGAAGCGTACGAGGATTCAGATTAA 1653 43.5 MVFLQVPVPSLEASSLSLSSLHSLRAEHLVGPYLNTICPSDLPRIPSYLPPGVSANELRQSRVTVYLFATLPLAGHSTTALHSPWVTYILIISSLSPSSFGRFSVLSLLFIIQMADNHETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAIETLIVWENLEINRNVLKNSVTGEIVIKHLNKEQEANQSNFRDPATSAELEVQEKTPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDDGEAYEDSD 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25132152 25134198 + BLOR20812 Blo08g00642 64594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00642 550 Gene3D eRF1 domain 1 111 248 IPR024049 -
Blo08g00642 550 SUPERFAMILY L30e-like 391 533 IPR029064 -
Blo08g00642 550 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 119 253 IPR024049 -
Blo08g00642 550 SMART eRF1_1_2 117 253 IPR005140 -
Blo08g00642 550 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 114 550 IPR004403 GO:0003747|GO:0006415
Blo08g00642 550 Pfam eRF1 domain 2 257 390 IPR005141 -
Blo08g00642 550 SUPERFAMILY Translational machinery components 255 389 - -
Blo08g00642 550 Pfam eRF1 domain 1 131 251 IPR005140 -
Blo08g00642 550 Pfam eRF1 domain 3 394 531 IPR005142 -
Blo08g00642 550 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 114 550 - -
Blo08g00642 550 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 125 530 IPR004403 GO:0003747|GO:0006415
Blo08g00642 550 Gene3D eRF1 domain 2 249 390 IPR042226 -
Blo08g00642 550 Gene3D - 392 550 IPR029064 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01026 Blo-Chr3:36543691 Blo08g00642 Blo-Chr8:25132152 0 dispersed
Blo08g00642 Blo-Chr8:25132152 Blo13g00675 Blo-Chr13:29492350 3.68E-136 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00642 K03265 - tcc:18601188 840.106