Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo08g00653 ATGGCAGATCTACGTGAAGGCAGGAAAGATGAAGCGGGAATCAAGCTATTTGGGAAGATTATCATATTCCAGAATACAAAAGAAAACGAAGAGGAAGTCAAAGCTGATCGAACGGAGGAGAAGAGGCCAGAGAAGATAATACCATGTCCGAGATGCAAGAGCATGGAGACCAAGTTTTGTTACTTCAACAACTACAACGTTAACCAACCCAGACATTTCTGCAAAGGTTGTCAGCGATACTGGACCGCCGGAGGAAACCTCCACAACGTCCCAGTCGGCGCCGGACGCCGGAAGAACAAGCCAGCTTGTGGCGGCCTTAACCAGTTTCCTGAGAGTTATCTGTATGGGGTGGCAGACTGGACTTTTACGGTGGGACCTGAAGATTTTCGGCGAGACTTTCTAATGAAGCGTCGTAGGGCGAGTGAAGGCCATTATTATTGA 441 48.3 MADLREGRKDEAGIKLFGKIIIFQNTKENEEEVKADRTEEKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGNLHNVPVGAGRRKNKPACGGLNQFPESYLYGVADWTFTVGPEDFRRDFLMKRRRASEGHYY 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25477769 25478209 + BLOR20823 Blo08g00653 64605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo08g00653 146 Pfam Dof domain, zinc finger 45 100 IPR003851 GO:0003677|GO:0006355
Blo08g00653 146 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Blo08g00653 146 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Blo08g00653 146 PANTHER CYCLIC DOF FACTOR 2 9 116 IPR045174 GO:0003700|GO:0006355
Blo08g00653 146 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 9 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00653 Blo-Chr8:25477769 Blo17g00365 Blo-Chr17:3957180 1.39E-34 dispersed
Blo08g00653 Blo-Chr8:25477769 Blo08g00655 Blo-Chr8:25647034 6.30E-85 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12744 PF02701 zf-Dof 5.90E-31 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo08g00653 - - pper:18778392 180.644