Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00001 ATGGATTTTAAACTTCTGTCTTCCGGGAACCCATTTTTAGAGGTTCCGGAGAGTTATGTCAGGCCGGAATCGGAGAGACCCGAGCTCGCCCAAGTTTCAGCTTGTGAGAACGTTCCGCTTATTGACTTGGGTTCCGACGACTGCAACGCCATAGTTAGACAAACAGCCGAAGCCTGCAAGAATTATGGCTTCTTTCAGGTGGTGAATCACGGGGTGCCCATGGAAACAGTGGCCGCGATGAAAGCGGTGGCAAGTGATTTCTTTAGTCTGCCCATCGAGGAGAAGATGAAGCTTTACTCCGATGACCCTTCCAAGACCATCAGACTGTCCACTAGTTTCAATGTAACCAAGGAGCAGATACACAACTGGAGAGACTATCTCAGACTCCATTGCTACCCCCTCCACAAATATGAGCCGGAGTGGCCTTCAAATCCCCCTCTCTTCAAGGATATAGTCAGCAAGTACTGCGTCCAAGTTCGACAACTTGCGTACCGAATCCAGGAGCTCATATCCCAGAGCTTGGGCCTCGACAAGGACTACATCAGCCGGACCTTGGGCTACGATCAGGGCCAGCACATGGCCCTTAACTTCTACCCCCCTTGCCCTCAGCCCGACCTCACCTACGGCCTTCCTGCCCACACCGACCCCAACTCCCTCACCATTCTCCTCCAGGACCTCCATGTCTCCGGCCTCCAGGTTCTCAAAGATGGCGTCTGGGTCGCCGTCAACCCCCACCCTGACGCTTTCGTCGTTAACATCGGCGACCAGTTGCAGGCCTTGAGTAATGGCGTGTATAAGAGTGTGTGGCACCGAGCCGTCGTCAATGCCGATAAGCCAAGGCTCTCTATCGCCTCCTTCCTCTGCCCTTCTGATGATGCTGTTATCTGTCCCGCCACTCCCCTCACCGCCCGTGGATCCTCCCCTATCTACAGGGCTTTTACCTACCCTGAGTACTACAAGAAGTTTTGGAGCCCTCACCCAAGAGCAGCTCAACTCTCGACTGTCCTGGAGGAACACAGAAACCCGAGAGTTCACAGTCCAGCCATCTCCATCTCTCGGCCACAAATCGACGCCTCCAGACCACAACCAATCGACAGAACAGGGAAAAAGGAGAGTAACCCAACCTCAAATTGTCGCCGGAACACGACCCGCGGCCGAATCTCCGATTCGTCCGGCACCGTTCGCCAGATGCCGCCACCCGAACTTCAGTTTTCTGGATTCGAGAAGCTTGCATTGAATCTTTCATGTGGAATTCGTGAACTTATACTGTACGAACTGAAAATGAATATTGATTCTGACTTTGATCAAACAATTTCGAATTCATCGAAGTCTATGCCAATGGAATCTGAAAGTTCCACGGTCATCCAAGAGAAGGGTAAAGGAAAAGAGGAGCTTGCTGATTCAATGGAGAAGCTAATTATTGCTGAGTCATCATCAGGGCAGATGGAAGGTTCATTAACCAGCTTCAAGAGAAAACCTGTTATTATTATTGTAATAGGAATGGCAGGAAGTGGCAAGACGACATTTCTTCATCGGCTAGTTTGTCATACGCAAGCCTCAAATATTAGGGGTTATGTAATGAATCTTGACCCTGCCGTGATGACCCTACCATTTGGTGCAAATATAGATATCAGAGATACTGTTCGATATAAGGAAGTGATGAAGCAATTTAATCTTGGGCCTAACGGAGGAATTTTGACTTCACTCAACTTGTTTGCCACAAAATTCGATGAGGTTGTCTCAGTTATTGAAAAACGGGCTGATCAACTGGATTATGTTCTTGTTGATACACCTGGGCAAATTGAGATATTCACCTGGTCTGCTTCTGGAGCCATCATTACGGAGGCTTTTGCTTCAACATTTCCAACTGTAATTGTCTATGTTGTTGATACACCTCGATCAGCCAACCCAGTGACTTTTATGAGCAACATGCTTTATGCTTGCTCTATTCTATACAAGACACGTTTGCCGCTGGTGTTGGCATTCAATAAGACAGATGTAGCTCAGCACGAGTTTGCTTTAGAGTGGATGGAGGACTTTGAGGCGTTTCAAGCGGCTGTGAGTTCAGATCATTCATATACAGCAACATTAACTCACAGCCTTTCCCTTGCGTTGGAAGAGTTTTATAAGAACTTGAGATCTGTTGGCGTGTCTGCAGTTTCTGGTGCTGGGATTGATGCCTTCTTTAAAGCCATTGAAACAAGTGCCGAGGAGTACATGGAAACCTACAAGTCGGCTGATCTTGACAAGAGAAGGGCAGAGAAGCAGCGTTTGGAAGAAGAAAGAAGAAAGGAGAACATGGATAAACTAAGGCAGGATATGAAGATGTCTAGAGGGGAAACTGTAATTTTGAGCACTGGTTTGAAGGATAAAAATAATGGGAGCAAAACCATGGTTTGTGATGAAGATGAAGATGAAGATGAAGAGATAGATGTGGAAGATGAAGATGAATATGATTACGCCATAGATGGAGATGAAGATGACGACAGATTCTCCCTCTAA 2502 47.48 MDFKLLSSGNPFLEVPESYVRPESERPELAQVSACENVPLIDLGSDDCNAIVRQTAEACKNYGFFQVVNHGVPMETVAAMKAVASDFFSLPIEEKMKLYSDDPSKTIRLSTSFNVTKEQIHNWRDYLRLHCYPLHKYEPEWPSNPPLFKDIVSKYCVQVRQLAYRIQELISQSLGLDKDYISRTLGYDQGQHMALNFYPPCPQPDLTYGLPAHTDPNSLTILLQDLHVSGLQVLKDGVWVAVNPHPDAFVVNIGDQLQALSNGVYKSVWHRAVVNADKPRLSIASFLCPSDDAVICPATPLTARGSSPIYRAFTYPEYYKKFWSPHPRAAQLSTVLEEHRNPRVHSPAISISRPQIDASRPQPIDRTGKKESNPTSNCRRNTTRGRISDSSGTVRQMPPPELQFSGFEKLALNLSCGIRELILYELKMNIDSDFDQTISNSSKSMPMESESSTVIQEKGKGKEELADSMEKLIIAESSSGQMEGSLTSFKRKPVIIIVIGMAGSGKTTFLHRLVCHTQASNIRGYVMNLDPAVMTLPFGANIDIRDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVVSVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVIVYVVDTPRSANPVTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEWMEDFEAFQAAVSSDHSYTATLTHSLSLALEEFYKNLRSVGVSAVSGAGIDAFFKAIETSAEEYMETYKSADLDKRRAEKQRLEEERRKENMDKLRQDMKMSRGETVILSTGLKDKNNGSKTMVCDEDEDEDEEIDVEDEDEYDYAIDGDEDDDRFSL 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15981 29340 - BLOR20916 Blo09g00001 64628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00001 833 CDD GPN1 494 734 - -
Blo09g00001 833 Coils Coil 736 773 - -
Blo09g00001 833 MobiDBLite consensus disorder prediction 800 826 - -
Blo09g00001 833 Pfam non-haem dioxygenase in morphine synthesis N-terminal 38 142 IPR026992 -
Blo09g00001 833 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 189 289 IPR005123 -
Blo09g00001 833 Pfam Conserved hypothetical ATP binding protein 498 736 IPR004130 -
Blo09g00001 833 PANTHER GPN-LOOP GTPASE 456 829 - -
Blo09g00001 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 495 734 IPR027417 -
Blo09g00001 833 MobiDBLite consensus disorder prediction 368 398 - -
Blo09g00001 833 Gene3D - 4 325 IPR027443 -
Blo09g00001 833 MobiDBLite consensus disorder prediction 440 461 - -
Blo09g00001 833 Gene3D - 493 751 IPR027417 -
Blo09g00001 833 MobiDBLite consensus disorder prediction 781 833 - -
Blo09g00001 833 MobiDBLite consensus disorder prediction 347 400 - -
Blo09g00001 833 PANTHER XPA-BINDING PROTEIN 1-RELATED 456 829 IPR004130 -
Blo09g00001 833 SUPERFAMILY Clavaminate synthase-like 13 324 - -
Blo09g00001 833 Pfam 2OG-Fe(II) oxygenase superfamily 191 289 IPR044861 -
Blo09g00001 833 MobiDBLite consensus disorder prediction 440 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00001 K24104 GPN; GPN-loop GTPase - qsu:111983141 585.874
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00792 Blo-Chr3:32989624 Blo09g00001 Blo-Chr9:15981 6.83E-122 dispersed
Blo03g00793 Blo-Chr3:33028715 Blo09g00001 Blo-Chr9:15981 3.42E-82 dispersed
Blo04g00885 Blo-Chr4:10143794 Blo09g00001 Blo-Chr9:15981 6.00E-30 dispersed
Blo07g01376 Blo-Chr7:33877725 Blo09g00001 Blo-Chr9:15981 2.66E-67 dispersed
Blo09g00001 Blo-Chr9:15981 Blo12g00389 Blo-Chr12:20596944 9.56E-68 dispersed
Blo12g00989 Blo-Chr12:27927637 Blo09g00001 Blo-Chr9:15981 1.16E-11 dispersed
Blo09g00001 Blo-Chr9:15981 Blo09g00529 Blo-Chr9:16498229 7.19E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g957 . . . . . . . Bma14g02030 Cmo16g00018 . . . . . . . . . . . . . . . . . . . . . . Cone1ag1024 Cone5ag0731 . . . . . . . Blo09g00001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006075 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00001 Blo_Chr09 FPKM 11.153098 10.982982 12.000716 11.062543 14.967074 12.891604 15.504602 13.332868 13.126711 14.580917