Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00003 ATGGCTGTTGCTGAGAATGCTGGAGCCAGAATCGGGTCGTCGAGTCAAAGTTTGGACAATTCCACACTGACAACTAATTCAACAACTCTTCTTGAAAACCAAAAACCCAGAAATGATCCTGGGGTTTTGAGTTTGGAATCCAATTTCCATCACATCAGTAGCGATCAGAGCCATCTCCAACAGATAGGCATCACAAATACAGGATCAGTTGGCCCCAACAATTTCATGGTTCCAATGGGTCAAATGCAAAATGGGTACGAAGGGAATGGTGTCAATAGCCCCCAGATGGTGGTAAGGTCTAATGGGATTATGAACGACGAGGATGGGGATAACAGTTTTAAGAGGGATATGAGGGATTTGGAGGAGCTCTTGTCCAAGCTGAATCCCATGGCTAAGGAATTTGTACCTCCCTCCCTAGCCAAAAATCACCTTGGCTACTTAAGTAGCGGTGGGTTTGGACTTTCAAACAACTTTCTGCTGCAAACTGATTCTGGCAATGGAAATACTAATCGGAGGAAGAAGAATGGCTTTAGTCAAGGGAGGCGTAGGATGAATTATAAGATGACTGCAGCACAGCGAGATGAAATGACTAGGAGGACTGTGTATGTATCTGACATTGATCAACAGGTCACTGAAGAGCAACTTGCTGCACTCTTTCTTAGCTGTGGACAAGTTGTTGATTGTCGTATTTGTGGTGATCCTAACTCCATTCTCCACTTTGCCTTTATTGAGTTTACTGATGATGAGAGTGCAAGGGCTGCTTTGAATCTGTCAGGAACGATGCTTGGTTATTACCCGGTTAGAGTGCTCCCTTCAAAAACTGCAATTGCACCTGTTAATCCTGAATTTTTGCCGAGGTCTGCAGATGAACGTGAAATGTGTTCAAGGACTATTTATTGTACAAATATTGACAAGAAGGTTACTCAAGCAGAGGTCAAACTTTTCTTCGAGTCATTGTGTGGGGAGGTTCAACGTCTTAGGCTTCTGGGAGACTACCATCACTCCACTCGCATAGCATTTGTTGAGTTCACAATGGCTGAAAGTGCAATTGCAGCTCTTAACTGTAGTGGCGTGGTTTTGGGTTCACTGCCAATAAGGGTAAGCCCATCGAAGACTCCAGTCCGCCCTCGTTCTCCCCGGCCTCAAATGCACTGA 1155 44.85 MAVAENAGARIGSSSQSLDNSTLTTNSTTLLENQKPRNDPGVLSLESNFHHISSDQSHLQQIGITNTGSVGPNNFMVPMGQMQNGYEGNGVNSPQMVVRSNGIMNDEDGDNSFKRDMRDLEELLSKLNPMAKEFVPPSLAKNHLGYLSSGGFGLSNNFLLQTDSGNGNTNRRKKNGFSQGRRRMNYKMTAAQRDEMTRRTVYVSDIDQQVTEEQLAALFLSCGQVVDCRICGDPNSILHFAFIEFTDDESARAALNLSGTMLGYYPVRVLPSKTAIAPVNPEFLPRSADEREMCSRTIYCTNIDKKVTQAEVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRPQMH 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44630 47043 + BLOR20918 Blo09g00003 64630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00003 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 274 IPR000504 GO:0003723
Blo09g00003 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 372 IPR000504 GO:0003723
Blo09g00003 384 CDD RRM2_CID8_like 292 373 IPR034825 -
Blo09g00003 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 365 IPR000504 GO:0003723
Blo09g00003 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 263 IPR000504 GO:0003723
Blo09g00003 384 MobiDBLite consensus disorder prediction 163 182 - -
Blo09g00003 384 MobiDBLite consensus disorder prediction 1 41 - -
Blo09g00003 384 Pfam Ataxin-2 C-terminal region 124 138 IPR009818 -
Blo09g00003 384 SUPERFAMILY RNA-binding domain, RBD 169 275 IPR035979 GO:0003676
Blo09g00003 384 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 384 - -
Blo09g00003 384 CDD RRM1_CID8_like 198 276 IPR034823 -
Blo09g00003 384 SMART rrm1_1 297 368 IPR000504 GO:0003723
Blo09g00003 384 SMART rrm1_1 200 270 IPR000504 GO:0003723
Blo09g00003 384 MobiDBLite consensus disorder prediction 9 35 - -
Blo09g00003 384 SUPERFAMILY RNA-binding domain, RBD 286 379 IPR035979 GO:0003676
Blo09g00003 384 Gene3D - 281 379 IPR012677 -
Blo09g00003 384 Gene3D - 161 276 IPR012677 -
Blo09g00003 384 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00003 - - - zju:107404761 526.554
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00318 Blo09g00003 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00240 Blo-Chr2:2308932 Blo09g00003 Blo-Chr9:44630 1.42E-07 dispersed
Blo07g00996 Blo-Chr7:29483805 Blo09g00003 Blo-Chr9:44630 1.50E-130 dispersed
Blo09g00003 Blo-Chr9:44630 Blo10g00693 Blo-Chr10:22245975 8.83E-122 dispersed
Blo07g00318 Blo-Chr7:4005500 Blo09g00003 Blo-Chr9:44630 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g974 . . Bda05g00141 Bda07g01957 . . Bma10g01318 Bma14g02028 Cmo16g00026 Cmo18g01373 . . . . . . Cpe14g00018 . . . . . . . . . . . . . . . . . . . . . . Blo07g00318 Blo09g00003 . . . . . . . . . Cma16g00021 Cma18g01339 Car16g00021 . Cpe09g00011 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003779 2 1 2 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00003 Blo_Chr09 FPKM 6.664976 7.200746 10.459875 11.283907 7.344609 5.49361 7.085836 25.012238 24.430676 26.632717