Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00004 ATGGGCGGAAGACGCTCCTGGTTGACTGCGGTCAAGAAGGCTCTTGCCCCTTCCACCAAGGAGAAGGAGAATGACAAAAATAACACCAGGAGAAGGGAGGACCATGAACAAGAAGAAGACGAAAAGAAGAGAGGGAAACGTCGATGGCTGTTCAGGAGGATTTCCATTCAAGAATCAAACGTACAACATTGTGAAACAAGGATCATAACCTCAACAGCAAACATTGAGAGACCCGGTACAAGTGACGAACGTACTTCTGATGCGCAGCACAGACGTGCCATTGCAGTAGCCATGGCCACCGCAGCAGCAGCCCAGGCGGCGGTGGCAACCGCCCAAGCAGCCGTGGAGGTGTTTAGACTCTCCAGGCCTTCCCTTTTCGTTAGAGAGCACTCGGCTGCGCTTCTCATTCAAAAAGCCTTCAGAGGCTATCTGGCGAGAAGAGCACTCCAGGCGCTGAAAGGAATTGTGAAGCTACAAGCTTTAGTGAGAGGATACAACGTTCGAAAGAGAGCAAAAATGACTCTCCAATGCATGGAAGCTCTGGTACGAGTTCAAGCCAGAGTCCTCCAGCAACGTACAAACAGGATTTCACGCGAAGGGAGTCTAGATTCTGCATATTTTAGCGATCACAGCAGCCAGAGCCAGAGGGGATCCCGATTCGCAGAAATCAGAAAGTCTTGCGCGACTTCTAGAGAAGAAGACAGCACCCCTCAAGAGTCGCTCGAGTTGATGGACATACAACTCCTGCTACACAAGGCCAGAGAAAACTCCCTCTCCCACGCCTTCTCGCAACAGCTATGGAAGAGTGGAGGAAAGGGAAGAGAGAGGGAGGATAAATCAAGATGGGCATGGGAGAGCAAGGGCAGACGATATTCATGCGATCAAAGAGACCCCATTAAAATAGTTGAAATGGATACTTCATCTCACCCTCACTCTCCCTCACCCCGCCATAACCAGAAGCAGAATCATCAATCTCCCGCCAATAGAGCCCACTCCCTGTTGTCGCTTCAATCCAACACCCCATCACCATCCAAAACGAAAACTCTGCAAATCCACTCGGCAAGCCCACGCTGCAATCCAAATTACATGTCGACAACTGCATCAGCGGATGCTAGGTTTCGATCCATGAGTGCACCCAGGCAGAGGCCTTGTACACCCGAGAGGGAAAAGAGCTGCTCTGCTAAAAAACGCTTGTCCTTCCCAGTTCCAGAACCCATTGCTGCTCATAGATTAGAAATGAACCAAACGTCGACGTCTTCTTGCTGCACAGACAGCCTCGTCGACGATGATGTCTCTCTGTCTTCACAGAGTGATCTCAGGGCGTGGTTTAGGCATTTGTAA 1341 50.48 MGGRRSWLTAVKKALAPSTKEKENDKNNTRRREDHEQEEDEKKRGKRRWLFRRISIQESNVQHCETRIITSTANIERPGTSDERTSDAQHRRAIAVAMATAAAAQAAVATAQAAVEVFRLSRPSLFVREHSAALLIQKAFRGYLARRALQALKGIVKLQALVRGYNVRKRAKMTLQCMEALVRVQARVLQQRTNRISREGSLDSAYFSDHSSQSQRGSRFAEIRKSCATSREEDSTPQESLELMDIQLLLHKARENSLSHAFSQQLWKSGGKGREREDKSRWAWESKGRRYSCDQRDPIKIVEMDTSSHPHSPSPRHNQKQNHQSPANRAHSLLSLQSNTPSPSKTKTLQIHSASPRCNPNYMSTTASADARFRSMSAPRQRPCTPEREKSCSAKKRLSFPVPEPIAAHRLEMNQTSTSSCCTDSLVDDDVSLSSQSDLRAWFRHL 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 48272 49926 + BLOR20919 Blo09g00004 64631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00004 446 PANTHER PROTEIN IQ-DOMAIN 14-LIKE ISOFORM X1 3 358 - -
Blo09g00004 446 ProSiteProfiles IQ motif profile. 129 157 IPR000048 GO:0005515
Blo09g00004 446 MobiDBLite consensus disorder prediction 16 44 - -
Blo09g00004 446 Pfam Protein of unknown function (DUF4005) 315 407 IPR025064 -
Blo09g00004 446 Gene3D - 126 193 - -
Blo09g00004 446 PANTHER IQ-DOMAIN 5-RELATED 359 414 - -
Blo09g00004 446 PANTHER IQ-DOMAIN 5-RELATED 3 358 - -
Blo09g00004 446 MobiDBLite consensus disorder prediction 305 362 - -
Blo09g00004 446 PANTHER PROTEIN IQ-DOMAIN 14-LIKE ISOFORM X1 359 414 - -
Blo09g00004 446 ProSiteProfiles IQ motif profile. 153 180 IPR000048 GO:0005515
Blo09g00004 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 173 IPR027417 -
Blo09g00004 446 Pfam IQ calmodulin-binding motif 130 149 IPR000048 GO:0005515
Blo09g00004 446 Pfam IQ calmodulin-binding motif 153 172 IPR000048 GO:0005515
Blo09g00004 446 MobiDBLite consensus disorder prediction 260 281 - -
Blo09g00004 446 MobiDBLite consensus disorder prediction 376 395 - -
Blo09g00004 446 MobiDBLite consensus disorder prediction 1 44 - -
Blo09g00004 446 MobiDBLite consensus disorder prediction 307 362 - -
Blo09g00004 446 SMART iq_5 128 150 IPR000048 GO:0005515
Blo09g00004 446 SMART iq_5 151 172 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00004 - - - qsu:112008677 357.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00186 Blo-Chr2:1680055 Blo09g00004 Blo-Chr9:48272 1.65E-76 dispersed
Blo09g00004 Blo-Chr9:48272 Blo12g00275 Blo-Chr12:16552268 5.23E-20 dispersed
Blo09g00004 Blo-Chr9:48272 Blo14g00521 Blo-Chr14:7389636 2.22E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g977 . . . Bda07g01956 Bpe03g00205 . . Bma14g02027 . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0723 . . . . . . . Blo09g00004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00004 Blo_Chr09 FPKM 35.637287 38.252102 45.256901 45.873974 54.288998 49.245819 53.975273 41.510403 42.67305 43.263985