Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00007 ATGAAGAATGGTTTGGTTCTCGGTTCTGCCTTGGAACCAACCCGAGCCATGCCCCACGGTTCTATATTATTGGCACTGGAATTGCGATCAATGGCTTCAGATCCGAAGGTTCACTCGTTCGAAGACGTGGCCAAGCACAACAAGACCAAAGATTGTTGGCTTATTATTTCTGGCAAGGTGTATGACGTAACTCCTTTCATGGACGATCATCCGGGAGGTGACGAAGTACTGCTGTCGTCGACTGGAAAAGATGCAACCAATGACTTTGAAGACGTCGGTCACAGCGATTCTGCAAGAGAAATGATGGACAAGTATTACATCGGGGAGATCGATGCATCGACGGTGCCGCTGAAGCGCAAGTATATTCAACCACAACAAGCCTCTTACAATCCGGACAAGACCCCCGACTTTGTCATTAAGATTTTACAGTTTCTAGTCCCGCTCTTGATCTTGGGCTTAGCATTCGGCGTTCGACACTACACCAAGAACGAGTAA 495 47.68 MKNGLVLGSALEPTRAMPHGSILLALELRSMASDPKVHSFEDVAKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDSAREMMDKYYIGEIDASTVPLKRKYIQPQQASYNPDKTPDFVIKILQFLVPLLILGLAFGVRHYTKNE 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 61155 62997 - BLOR20922 Blo09g00007 64634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00007 164 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 66 73 IPR018506 GO:0020037
Blo09g00007 164 Pfam Cytochrome b5-like Heme/Steroid binding domain 40 110 IPR001199 -
Blo09g00007 164 PANTHER CYTOCHROME B5-LIKE 31 162 - -
Blo09g00007 164 PRINTS Cytochrome B5 signature 98 110 IPR001199 -
Blo09g00007 164 PRINTS Cytochrome B5 signature 85 92 IPR001199 -
Blo09g00007 164 PRINTS Cytochrome B5 signature 60 70 IPR001199 -
Blo09g00007 164 PRINTS Cytochrome B5 signature 70 84 IPR001199 -
Blo09g00007 164 SMART Cyt_b5_2 38 111 IPR001199 -
Blo09g00007 164 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 35 111 IPR001199 -
Blo09g00007 164 PANTHER CYTOCHROME B5 31 162 - -
Blo09g00007 164 Gene3D - 29 116 IPR036400 -
Blo09g00007 164 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 32 124 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00007 K23490 CYB5; cytochrome b5 - sind:105166769 255.758
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00247 Blo-Chr1:3128060 Blo09g00007 Blo-Chr9:61155 1.31E-46 dispersed
Blo02g00229 Blo-Chr2:2178838 Blo09g00007 Blo-Chr9:61155 1.37E-54 dispersed
Blo07g01073 Blo-Chr7:30552710 Blo09g00007 Blo-Chr9:61155 4.90E-46 dispersed
Blo09g00007 Blo-Chr9:61155 Blo10g00592 Blo-Chr10:17678429 3.48E-32 dispersed
Blo17g00286 Blo-Chr17:3027837 Blo09g00007 Blo-Chr9:61155 1.82E-06 dispersed
Blo09g00007 Blo-Chr9:61155 Blo16g00687 Blo-Chr16:26502338 3.62E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g991 . . . Bda07g01952 . . . Bma14g02023 . . Cma02g01139 Cma15g01010 Car02g00943 Car15g00942 . Cpe05g00584 . . . . . . . . Cla01g00023 Cam01g0022 Cec01g0020 Cco01g0024 Clacu01g0023 Cmu01g0022 Cre09g2485 Cone1ag1008 Cone5ag0716 . . . Csa05g00025 Chy09g01458 . . Blo09g00007 . . . . . . . Cmo02g01170 Cmo15g01073 . . . . . Cpe13g00327 Bhi12g00682 . . . Hepe06g0817 . . . . . . . . . Lsi09g00003 . . Cme09g02007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo09g00007 . 31 164 NADPH P450 reductases AT5G53560 81.3 2.7e-61 231.5
Blo16g00687 . 1 134 NADPH P450 reductases AT5G53560 69.4 6.0e-53 203.8
Blo02g00229 . 16 121 NADPH P450 reductases AT5G53560 69.8 7.6e-40 160.2
Blo16g00687 . 1 134 NADPH P450 reductases AT5G48810 66.9 2.6e-51 198.4
Blo09g00007 . 31 164 NADPH P450 reductases AT5G48810 62.5 1.8e-47 185.7
Blo07g01073 . 1 138 NADPH P450 reductases AT5G48810 56.7 7.9e-40 160.2
Blo16g00687 . 22 133 NADPH P450 reductases AT2G32720 83.0 3.6e-50 194.5
Blo02g00229 . 16 120 NADPH P450 reductases AT2G32720 84.8 1.7e-47 185.7
Blo09g00007 . 52 163 NADPH P450 reductases AT2G32720 67.9 9.0e-41 163.3
Blo07g01200 . 399 723 NADPH P450 reductases AT5G17770 68.9 1.4e-123 439.5
Blo08g00150 . 8 278 NADPH P450 reductases AT5G17770 76.0 1.8e-120 429.1
Blo09g00346 . 2 251 NADPH P450 reductases AT5G17770 80.0 2.3e-115 412.1
Blo09g00007 . 31 164 NADPH P450 reductases AT5G53560 81.3 2.7e-61 231.5
Blo16g00687 . 1 134 NADPH P450 reductases AT5G53560 69.4 6.0e-53 203.8
Blo02g00229 . 16 121 NADPH P450 reductases AT5G53560 69.8 7.6e-40 160.2
Blo16g00687 . 1 134 NADPH P450 reductases AT5G48810 66.9 2.6e-51 198.4
Blo09g00007 . 31 164 NADPH P450 reductases AT5G48810 62.5 1.8e-47 185.7
Blo07g01073 . 1 138 NADPH P450 reductases AT5G48810 56.7 7.9e-40 160.2
Blo16g00687 . 22 133 NADPH P450 reductases AT2G32720 83.0 3.6e-50 194.5
Blo02g00229 . 16 120 NADPH P450 reductases AT2G32720 84.8 1.7e-47 185.7
Blo09g00007 . 52 163 NADPH P450 reductases AT2G32720 67.9 9.0e-41 163.3
Blo07g01200 . 399 723 NADPH P450 reductases AT5G17770 68.9 1.4e-123 439.5
Blo08g00150 . 8 278 NADPH P450 reductases AT5G17770 76.0 1.8e-120 429.1
Blo09g00346 . 2 251 NADPH P450 reductases AT5G17770 80.0 2.3e-115 412.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00007 Blo_Chr09 FPKM 10.842794 12.120721 13.477747 13.956538 17.706196 17.411079 19.470377 19.469402 17.603947 20.225534