Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00009 ATGATACGGCAGCCATCCGCTCCTCACCCATGTCTCCGTTTCTCCCCCTTCTTCCCGGAAATCAGCGACGGTCTTCGTCTTTCCACTTTTTTCAAACTCGTCCTCTCTCCCACCACTTCCTTCGTTGAGGTTGTAGAGAGGGAGGCCGAAGCCTGTCTGGCCGTTGGAATAAGAAAATCCTTCATGGGTGTCTCGTCGGAAACGAAGCTATTGCAGGAGCTGTTGCTTTATGCAGCTAGCGCAGCCTTGAGCTGCTTGATTTTGTTCGCGGGGCTCCGACACCTGGATCCCAACCGCGAGACCTCAAAAAAAGCCCTTGAACACAAGAAGGAGATTGCCAAGCGCTTGGGTCGCCCCTTCATTCAAACCACCCCTTACGAAGATGTCATAGCTTGTGATGTCATAAATCCTGACCACATTGATGTGGAGTTTAACTCCATTGGGGGATTGGAATCTATCAAACAAGCTTTAATTGAACTGGTGATACTTCCTCTGAGAAGACCAGATCTTTTTTCACATGGAAAGCTTCTTGGTCATCCGAAGGGTGTCCTGTTATATGGACCGCCAGGCACAGGGAAAACCATGCTTGCAAAAGCTATTGCAAAGGAATCTGGGGCTGTTTTTATCAATGTTAGAGTATCAAATTTGATGAGTAAATGGTTTGGCGATGCACAAAAACTTGCCTCCATTACCATCGAGTTCTTTGTCTCCGTTGTTACTAGTGAACTCATTCTAATTTCGGGACTAGGCTCTCTTTCATTTTCAAGGAATGATTTAGCGAAGAAAACGGTGGCAATATCTGAGGAGCAAAAGAAAATAGACAACGAGAGGGAGAACACTTTGAGAAGAAGAATTGGAAATTGTCGAGAGGAAAAAGTGAGTGTGATGAAAATAGAAAGAGGAGTTAATTAG 912 45.5 MIRQPSAPHPCLRFSPFFPEISDGLRLSTFFKLVLSPTTSFVEVVEREAEACLAVGIRKSFMGVSSETKLLQELLLYAASAALSCLILFAGLRHLDPNRETSKKALEHKKEIAKRLGRPFIQTTPYEDVIACDVINPDHIDVEFNSIGGLESIKQALIELVILPLRRPDLFSHGKLLGHPKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRVSNLMSKWFGDAQKLASITIEFFVSVVTSELILISGLGSLSFSRNDLAKKTVAISEEQKKIDNERENTLRRRIGNCREEKVSVMKIERGVN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 67563 69313 + BLOR20924 Blo09g00009 64636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00009 303 CDD AAA 148 235 - -
Blo09g00009 303 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 65 233 - -
Blo09g00009 303 Gene3D - 141 228 IPR027417 -
Blo09g00009 303 SMART AAA_5 179 291 IPR003593 -
Blo09g00009 303 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 65 233 - -
Blo09g00009 303 Coils Coil 259 279 - -
Blo09g00009 303 Pfam ATPase family associated with various cellular activities (AAA) 183 280 IPR003959 GO:0005524|GO:0016887
Blo09g00009 303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 224 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00009 K22530 ATAD1; ATPase family AAA domain-containing protein 1 [EC:3.6.1.-] - zju:107414999 296.204
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo09g00009 Blo15g00077 CCT
Blo06g01054 Blo09g00009 CCT
Blo09g00009 Blo15g00077 ECH
Blo06g01054 Blo09g00009 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00009 Blo-Chr9:67563 Blo05g00234 Blo-Chr5:2583911 1.63E-34 dispersed
Blo15g00077 Blo-Chr15:670165 Blo09g00009 Blo-Chr9:67563 6.87E-87 wgd
Blo06g01180 Blo-Chr6:35261045 Blo09g00009 Blo-Chr9:67563 1.01E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g994 Blo06g01054 Blo15g00077 . Bda07g01950 . Bpe07g01027 . Bma14g02021 Cmo16g00035 Cmo18g01364 Cma02g01138 Cma15g01011 Car02g00942 Car15g00945 . Cpe05g00585 Cpe14g00023 Bhi01g01520 . . . . Mch10g0036 . Cla01g00024 . . . . . . . . . . . . . Cme06g01170 . Blo09g00009 . Bda15g00794 . Bpe12g00340 . Bma12g01222 . Cmo02g01169 Cmo15g01074 Cma16g00030 Cma18g01333 Car16g00027 Car18g01248 Cpe09g00014 Cpe13g00326 Bhi12g00680 . . Lac11g0112 Hepe06g0815 . Lcy12g0093 Cla05g00988 Cam05g1079 Cec05g1087 Cco05g1081 Clacu05g1073 Cmu05g1023 Cre05g1097 Lsi09g00005 Csa03g01964 Chy06g01176 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033932 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00009 Blo_Chr09 FPKM 29.955555 34.822803 25.574612 28.012119 29.13855 28.051514 33.248718 31.453289 35.32864 34.79353