Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00015 ATGACTCGACAGCTCTCCTCCATGATGAGGAAGAGTGGGTGGACAGAAGTGCCTGATAAAATGGCTTTCTGCGTGTTGGTGACAGTTCAGGAGGAGGAAGATGATGACCCCAAATCCAAATCATCACGTGTTGTTAATTGGATTAGCAATGGGGTTGACGGAATTGGAGTTGTTAAATCGATGGAAGATGCGAGGCCTGCTGTCGAGAGAAAGGCGAGGCCTCAAAAGGATCACGCTTTGAACTGTCCGAGGTGTAATTCAACCAGCACAAAGTTCTGTTATTACAACAATTACAGCCTCTCTCAGCCGAGGTACTTCTGCAAAACATGTCGGAGGTATTGGACGGAAGGAGGGTCTCTGAGAAATGTTCCGGTGGGTGGAGGCTCCCGGAAGAATAAGAGATCATCCTCATCATCCACGACTGTTACCACCTCAACATCGTCTCCTTCATCGGGGAACAAAGTCATCACTGATCTGAACCCACAAGGTAATTTTCTTCAGTCTGCTTCTCAAAACCCTAAAATCCACCAGGGTCAGGATCTAAACCTAACCTACCCGCCGGCTGATGATTATAGTAGTGCGTCCAAATTTGTTGGCGTACCACTACAAAACGGTGACTGCAAAAACCCTAGCTCTTCTACAAATGCTTCATCAAATCTGTCGGCCATGGAATTACTCAAGACTGGTATTGCATCGAGGGGACTGATTTCCTTCCTGCCTATGCCTGAATCAGAGTCCAACATGTTCGTCAATGGCGGCTTTCCTATGCATGAATTCAAACCCACCTTTAATTTTTCCCTTGACGGGTTTGAAAATGGGTATGGAGGTTTTCAAAATGTGCAAGAGACAGTTGCCGGTACCGCCAGACATTTGTTTCCCATTGAAGATTTGAAGCAAGTTCCAAGCAACGCCTCTCCCGAATTTCAGCAAAATAGAGAGCTAGGAGATCCAGCAGGGTATTGGAATGGGGTTTTTGGGGGAGGACCATGGTCGGCCATGTCTGGTCTTTTCAATTTCAGCTCCATCTGGGACCTTGAGATTCTTCCACCCCGTCAAACCCATCTCCCCATTTCAAGCAACAAAGTATATGGGAATCTGATTTACTCCACCATAATTAATTACGAGCAGCCCGCAGGACCCGTAGACCTCGATTTCATATGGGAGCAGTGGCCTAAGGTCCCACAAAACATTCCCTTAGATAATCGTGCTGCTGCGTCGTTTGTTTCTTCTCAGGAAGACGACGAAGGAGAGAGAATTCTTTATATTTATGAATTCTGA 1278 46.48 MTRQLSSMMRKSGWTEVPDKMAFCVLVTVQEEEDDDPKSKSSRVVNWISNGVDGIGVVKSMEDARPAVERKARPQKDHALNCPRCNSTSTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSSSTTVTTSTSSPSSGNKVITDLNPQGNFLQSASQNPKIHQGQDLNLTYPPADDYSSASKFVGVPLQNGDCKNPSSSTNASSNLSAMELLKTGIASRGLISFLPMPESESNMFVNGGFPMHEFKPTFNFSLDGFENGYGGFQNVQETVAGTARHLFPIEDLKQVPSNASPEFQQNRELGDPAGYWNGVFGGGPWSAMSGLFNFSSIWDLEILPPRQTHLPISSNKVYGNLIYSTIINYEQPAGPVDLDFIWEQWPKVPQNIPLDNRAAASFVSSQEDDEGERILYIYEF 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 156727 160924 - BLOR20930 Blo09g00015 64642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00015 425 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
Blo09g00015 425 MobiDBLite consensus disorder prediction 129 179 - -
Blo09g00015 425 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
Blo09g00015 425 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 57 326 - -
Blo09g00015 425 Pfam Dof domain, zinc finger 78 134 IPR003851 GO:0003677|GO:0006355
Blo09g00015 425 MobiDBLite consensus disorder prediction 121 185 - -
Blo09g00015 425 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 57 326 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00015 - - - qlo:115960401 349.362
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00326 Blo09g00015 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00015 Blo-Chr9:156727 Blo16g00241 Blo-Chr16:5559856 1.88E-37 dispersed
Blo07g00326 Blo-Chr7:4195737 Blo09g00015 Blo-Chr9:156727 7.02E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1009 . . Bda05g00131 Bda07g01944 Bpe03g00228 . Bma10g01308 Bma14g02017 Cmo16g00040 . . Cma15g01014 . Car15g00949 . . Cpe14g00027 Bhi01g01514 . . . Hepe07g0043 Mch10g0043 . Cla01g00029 Cam01g0028 Cec01g0026 Cco01g0028 Clacu01g0028 Cmu01g0027 Cre09g2479 . Cone5ag0708 . . . . . Cme06g01166 Blo07g00326 Blo09g00015 . . . . . . . . Cmo15g01079 Cma16g00034 . Car16g00033 . . Cpe13g00322 Bhi12g00672 . . . . . . Cla05g00985 Cam05g1076 Cec05g1083 Cco05g1076 Clacu05g1070 Cmu05g1021 Cre05g1095 Lsi09g00009 Csa03g01968 Chy06g01178 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12747 PF02701 zf-Dof 1.10E-32 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00015 Blo_Chr09 FPKM 36.073376 36.973412 79.872673 74.646103 12.417973 11.57136 10.733335 33.112164 35.164818 33.636314