Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00017 ATGGATGACATCAGTGACGACGAAGAATCCCAGTTTTTTGATGCCCCAGAGGATGTTTCTTCAATATCTGATGGAAGTTGTGATGGTAGAGGGAATCTTCGTTATAATTCTAGTTTAAAGGATCGTTTTCAGTGTGGTTTCCTGAATGATGTTTGGAGCAGGAGCCCCCAGAGTGTTGAAGAACGCCGTGGAAGGTTTTTGCAATGGATGAGATTGAATTTGGATCAAATTGCTCTTGATCATTCAGAGGATTTATGTGATGATATGATGGTAGAACAAAACGAAAGAGTTGTGGAGAGCAATAGGGCTGCAGATGAGTTCTATTCGACTGATAATTTTGATTCTGCAGAGCAGGAAGGTTCAGTTGAAAATGTTGTTTGCAGAGATGAGAGAATTGTCTCTAACGCGGATGAGATGAAGCTGAACAAGAGGAGCATTGAGTTCAAAGAAGTTCAAATAGGGATGGTTGATGAGTGTGAAACAAGTTCTAGTTCATTTTCCTCTGTTCATATGATGAAGACCGGTGTTCAGGAGAGAAACAGTCCAGGGGATTACACGAAGAGACATAAGAAGAATTGGCTGCAAAAGTTGCGTTCTTTAGCGTGCGTTGTTGGTGCGAACGATGAAGATTGCCCATCGAGATCAGATAAAGATGAACTCCTGAGGCCCAAATTTCAAAGAATTAAAGTCCATCAGTTCAAGAAGCAATCGAAGGAGCTTTCTGCTCTTTATATGGGGCAAGATATCCATGCCCATGATGGTGCAATTTTGGCAATGAAATTCAGCCCTGATGGGCAATATCTTGCAAGTGGTGGAGAGGATGGGATTGTTAGATTGTGGCAAGTGGTGGAGGATGAGAGATCTAATGAAACAGATATTCCAGAAATCGATCCATCGTGCATGTACTTCACAGTGAACCATCTATCTGAATTGAAACCTCTATATGAGGATAAAGAGAACACAAGTTACAGATCAATAAGCCTGAAGAAGACATCAGAATCCGCTTGTGTCGTTTTCCCTCCTAAAGTCTTCCGTATCGTGGAAAAGCCCTTGCGAGATTATTGTGGACATAAGGATGAGATCTCCGATCTATCGTGGTCTAAGAACAACTATCTTCTCTCCTCATCAGTTGACAAATCCGTTCGTTTATGGCACGTAGGACATGACAATTGCATAAAAGTTTTTTCCCACAGTGACTATGTAACATGTGTGCAATTTAATCCCGTGGATGATAATCACTTCATTAGCGGGTCAGTAGATGGAAAAGTCCGCATTTGGAGAATATCCTCCTGTCAAGTTGTTGATTGGAGTGATATCAGAGAAATCGTTACTGCAGTGTCTTATCGGCCGGATGGAGAGGGAGGAATTGTTGGATCAATGACCGGTGATTGTCGATTTTACAACATATCAGATAACCACATGCAGTTGGATGCTCAAATATCCTTCAATAGTAAGAAAAAGTCTGGTGGGAGGAAGATAACAGGCTTTCAGTTCTTTCCTCAAGATTCCAGCAAAGTAGTGGTGACTTGTGCTGATTCTTATGTCAGAATTCTTCATGGATCTGATGTGGTAGGAAAATACAAGGGATTTCACAATGCTGGAAACCAGGTTCCAGCCTCGTTCACTTCGGATGGCAAGTATATTGTGTCGGCTTGCGGGGATTCGAATGTATATCTATGGAACTCCGGTGGTCTCTCGCACGCCAAAAAAATTAAATCTTATGAGCATTTCTCAACCAATGCCTCTGTTGCTGTGCCTTGGAGTGGTATCAGATGTAGTAACACAGAGAATGGATGCCAATATTATGCACTGGAAAAGATTGCATCTGAGAATCAGTCTCTCTCTTCTTCACCTGCTAGTTTCCTGTTGAGTAAAGAGTATTTCTTGGAGACATTTCCGAAGGGATCGACGCTTTGGCCCGAAGAGAAACTACCTGAATCCAGCCTGCATTTCAAGCAGTTGAGAATGCACAAATCTCAGTACAAGTTTCTCAAAGCTTCCTGCCAGAAGACATCAAATTCGCATGCTTGGGGCATGGTCATTGTTACCGCGGGCTGGGATGGCCGGATGAAGTCGTTTCATAATTATGGATTACCGGTACCCGTTTGA 2109 42.48 MDDISDDEESQFFDAPEDVSSISDGSCDGRGNLRYNSSLKDRFQCGFLNDVWSRSPQSVEERRGRFLQWMRLNLDQIALDHSEDLCDDMMVEQNERVVESNRAADEFYSTDNFDSAEQEGSVENVVCRDERIVSNADEMKLNKRSIEFKEVQIGMVDECETSSSSFSSVHMMKTGVQERNSPGDYTKRHKKNWLQKLRSLACVVGANDEDCPSRSDKDELLRPKFQRIKVHQFKKQSKELSALYMGQDIHAHDGAILAMKFSPDGQYLASGGEDGIVRLWQVVEDERSNETDIPEIDPSCMYFTVNHLSELKPLYEDKENTSYRSISLKKTSESACVVFPPKVFRIVEKPLRDYCGHKDEISDLSWSKNNYLLSSSVDKSVRLWHVGHDNCIKVFSHSDYVTCVQFNPVDDNHFISGSVDGKVRIWRISSCQVVDWSDIREIVTAVSYRPDGEGGIVGSMTGDCRFYNISDNHMQLDAQISFNSKKKSGGRKITGFQFFPQDSSKVVVTCADSYVRILHGSDVVGKYKGFHNAGNQVPASFTSDGKYIVSACGDSNVYLWNSGGLSHAKKIKSYEHFSTNASVAVPWSGIRCSNTENGCQYYALEKIASENQSLSSSPASFLLSKEYFLETFPKGSTLWPEEKLPESSLHFKQLRMHKSQYKFLKASCQKTSNSHAWGMVIVTAGWDGRMKSFHNYGLPVPV 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 174584 177439 + BLOR20932 Blo09g00017 64644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00017 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 430 IPR001680 GO:0005515
Blo09g00017 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 249 282 - -
Blo09g00017 702 SUPERFAMILY WD40 repeat-like 248 564 IPR036322 GO:0005515
Blo09g00017 702 Gene3D - 232 590 IPR015943 GO:0005515
Blo09g00017 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 354 386 - -
Blo09g00017 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 354 394 IPR001680 GO:0005515
Blo09g00017 702 PANTHER WD REPEAT DOMAIN 44 6 702 IPR040324 -
Blo09g00017 702 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 702 - -
Blo09g00017 702 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 430 - -
Blo09g00017 702 MobiDBLite consensus disorder prediction 1 26 - -
Blo09g00017 702 Pfam WD domain, G-beta repeat 349 384 IPR001680 GO:0005515
Blo09g00017 702 Pfam WD domain, G-beta repeat 250 280 IPR001680 GO:0005515
Blo09g00017 702 Pfam WD domain, G-beta repeat 390 426 IPR001680 GO:0005515
Blo09g00017 702 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Blo09g00017 702 PRINTS G protein beta WD-40 repeat signature 414 428 IPR020472 -
Blo09g00017 702 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Blo09g00017 702 SMART WD40_4 388 427 IPR001680 GO:0005515
Blo09g00017 702 SMART WD40_4 429 468 IPR001680 GO:0005515
Blo09g00017 702 SMART WD40_4 520 561 IPR001680 GO:0005515
Blo09g00017 702 SMART WD40_4 347 385 IPR001680 GO:0005515
Blo09g00017 702 SMART WD40_4 473 519 IPR001680 GO:0005515
Blo09g00017 702 SMART WD40_4 242 281 IPR001680 GO:0005515
Blo09g00017 702 ProSiteProfiles Trp-Asp (WD) repeats profile. 249 290 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00017 - - - zju:107421839 815.839
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo09g00017 Blo15g00080 CCT
Blo09g00017 Blo15g00080 ECH
Blo07g00327 Blo09g00017 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00643 Blo-Chr3:27416956 Blo09g00017 Blo-Chr9:174584 3.19E-108 dispersed
Blo09g00017 Blo-Chr9:174584 Blo16g00526 Blo-Chr16:21600463 1.28E-129 dispersed
Blo15g00080 Blo-Chr15:683090 Blo09g00017 Blo-Chr9:174584 0 wgd
Blo07g00327 Blo-Chr7:4246234 Blo09g00017 Blo-Chr9:174584 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00017 Blo_Chr09 FPKM 8.521876 6.906363 9.124573 8.84754 10.499846 10.043254 10.606717 10.780496 9.679859 9.985698