Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00027 ATGGTGCTGAGCAATGTTGAAAACGAGGTGGGAGTTTTAGACCAGGCACAGAAAGAAAGGAATTACGGGAATGTTATGATTGGTGAAAATGGCCTCGTTATTGAAGTTGATGGTCAGAGAGAAACAGCAAAAATACCATGTCGTATAGAAAATATGGAAGGTGAAGATGTGAATCTTGGAGGAGAAGGAATTCTTGGTCATTATGGTGGATCTTGTGGAATTTCAAGAGAGAATGGTGGTCAAAATTTTGTTGGCAATGAAAGTACTCTTCAGTTATGGAGTGGTGAAGATTCTTGTTTCTATCATGGTGGAGAAGTCGGGGTTGGTGCGTCTAGGGAAGCTCATTTTGGGAAAATTGAACATGGGTTTGGGGAAGTAGTCAAGGTGGGTGGTTCTGTTAGTGAAGCTTGTGAAATGGATAATTTTGGCCTTTGTGGTGAAAGAATCAGAGCAATATTTGGTGAAACTAGTGACAGAAATGATAGTCTGAGCCATGACGAGGAACGATTTCAAGATGTTTTTGGTGAAGTAAATGGCGGGAAGAGGGACTTGAATCTGGGATGGTGTACAGACATTGTTAATCAATCAGTTCCAATGTTGTCTGGTGAACATGAATCGGTTATTGGAGGTGCACGAACTGAGTTTGATGATTATGGGGGAAAAAGTGGAGCAGAAGTGACGATCAGCTTGGGAAAAAAGCGTGGCAGGCCAATGGGATCAAAAAATAGACCAAAATTAATCAATGCAGAAGAGAAGAAAATAGGGATTGAGCTTGCAAGCAGTAGTGTGAGGGAACATGGAAAGCGAGGTCGGCCAAAGGGTTCGAAGAACAAGATGAAAACTCAGACAAACGATGGAGTTCAGGGACTTTTTATTCAAGTCAACGGTGGAAATGGCGGAGAGACAATGGGGTTGGACTGTCGGACTGCAAGTTTTCAAGGTGGTGATTCCATTGATTATAATCAGAGTAAAACTGTGATTATATGGCCAAATTTTAAGCATGGTCGCGGTCGCGGTCGCCCCAAAGGTTCAAAAAATAAGAAAAAACTTCGTGGTTGTGAAAATAGCAAAGTTACAAGTGAAATTAAGGCAGCAAATGATTATGGTGAAAAAGAAACATGGCCAACCTTCGATGTCATAAATGATGTGAGAATACCTTGCACAGGAACTGTTGGTAATGAAGGGGGAGATGAGATGGTCAAGGCTAAGAGGAAGCCTGGGAGACCAAAGGGTTATATGAGCAATAAGAAAAGCTTCATAGATGGAGAGTGTGGGAACAAATCTCTTGCTTCCAAGGATGGTGATGATGGCAGCATTCATCTACTTAGTTTGGATGATGGACCATTTAGAACATATCCCTCTGCTTCATTTTGTATTAATGACAATGAAACCAAGACTGTGCAGCCAAGACAAGGGCGGGGGCGGGGGTGGGGGAGGTTGCAGAGTGATAGACCAATGAGTGAAGCCCAAACAATGGCGAAAGTCTTTGGTGAGAATGTGCAGTCAGAAAACAAGGGTGGTCGACCCAGGGGTTCAGAGAATAAGAAAATATTAGTTTCAGGTAAAAATATTTCCACGGCACCTTGTACAATGAGGGATAGGGGAATGTTTGATGAAGTTACCTTTGGAAATGTTGGTGAAAACAAGTTTGCCCAAACAGAATATAAGTGTATCCGAACTACTGAGGTTATGATAAAGAAGGAACAAACGATAGCGGATAAAGATCATGAGGCTTTAAAAGCGATGGACAAAAAGGACAATGTAGATGAGAGTTTGACATACAAGCTACGAAGCAGAACGATTAGTTCAAAAAGTTTTCCAGGTGCAAACAAGGTGGTTGCTAGATTGAAAAGGACTTGGCGGAATTTAATGTGCCATCAATGCAGGAATGATAGAAGTGGTGTAATCGAATGTCCAAATTGCAAACGGAGACGTTATTGCCATTCATGCCTCCAAAAATGGTACCCTCAATTAGTGAGCGAAGGTCTGAAGAAGGGTTGTCCATTTTGTCGTGGCTTCTGCAATTGCAGCCTTTGTCTGAACAAGAATTTAGTCGTGAAGAGTGAACAAACAGACAAAAATGTAAGACTGAAGAAGTTGCTTCATGTGCTGCACTATACTCTGCCTCTTCTCAGACATGTTCAATGGGAGCAAAAGGCAGAATTAGACATTGAATCGAGCATCCAAGGAATTGTTTTGACTGAAGAGGATGTAATAAAGGCTGTTCTTGACGATGACGATCGTATTTATTGGTATCTTCTTATTTTCCTGAAGCCATACTTTGCTCTATGTATCTCCAGTTCATACTTCCTTACTATGCCACTGGATGACAACTGCAGCACCTCCATTGTCAATTTCCATAGAAGCTGCTCCAATCCTGAATGTTCTTATGATCTCTGCCTCACTTGTTGTCGGGAATTGAGAGAAGGATTTGGCGTGGGAGGTAGTAAGAAAGAAGAAGCTCTTGACCAGGAATTTTCCCAAATATCACATGGCCAAGAATGGAAAGCCGAGGTGGATGGGAGGATTTTCTGCCCACCAAGCATGCAGGGTGGCTGTGGTTCAAAGGTTCTTATTTTGAGGCGGATCTTTGAAGCCAATTGGATTGAAAAGCTAATTTTGAGCGCAGAAGATCTGACTGTAAATTATAAGTCTTCGCTTCCTCATTTTTCTCAAGTTTGTACTTTGTGCCATCCTAAGGGTTCTGTAGACAAAAAAAGTTGCGCAGAAAATGGAGAAGAAATTTGTGAAGCTAGGCAAGCAGCCTATAGAGAGAACAGCAATGATAACTATCTGTACTGCCCAAATGCTGTTCTCTTGAAGGACAATGACATTGAACATTTTCAAATGCATTGGTCAAGAGGAAACCCCATTATAGTTCGTAATGTACTAAAAAATGCTTCTGGTCTTAGCTGGGAACCGATGGTAATGTGGAGGGCTTTTAAAGGGGCAAGAAAAGTATTGAAAGAGGAGGCTGTGAGAGTTCGAGCTATTAATTGCTTGGACTGGTGTGAGGTTGAGATTAACATCTCCAAATTTTTCAAGAGCTACTCAGAGGGTCGTCGATATAGAGATGGGTGGCCTGAAATGTTAAAGCTGAAGGATTGGCCTACATCAAATACTTTTGAACAATGTTTGCCAAGGCATGGTGCTGAATTTATCGCTATGCTTCCATTTAGCGACTACACCCATCCAAAGTTTGGTATTCTGAATCTTGCTACAAAGCTTCCTGTTCTTTTGAAACCAGATTTGGGACCCAAAACGTACATTGCCAATGGATTTATAGAAGAGCTTGGCAGAGGTGATTCTGTAACAAAACTACATTGTGACATTTCTGATGCGACTGATGAGATATGTGGCAGCAACTATTCAAGCACTTCCTTGATTGATCCAAATGCATCTGTTCTTCCCTGTCACTTGCCAAATGATATGATAGATTACACCTCTGGATTATGTCATGATGGAAATATATCCACTCATAGTCAGATTGTTGAAGATCCATGTCTAGACTTGAACTATTTTGCCAGCAACGGTGATGAATTTCCTTCATCTAATGAGAAGATCTCAGTCCTCACTTCTTTGTTTAATGGAAACAGCTCCAAAAGTGAGGTGGCCTCAGACCTTAGCTGTCTTGCTGTTGAAAATGTTCATTCAGCTGTAGGACATGAAACTAATAAACAAGCTTCAAACAATGGAGATATTTTTCAGGCTCCATTGATCTCAGTTGAAAAACCTGATTTAAATTCAATCGGAGATTTATCTAGAATCAACGGTTGTCCAGAGATTGAATATGGAGGTGCCGTATGGGACATTTTTCGTAGACAAGATGTTCCCAAGTTAATCGAGTACCTTAATAAACACCAAGAAGAGTTCTGTCACATCAATAATCTTCCCGTGAATTCAGTTAATCATCCTGTACATGATCAGACTTTGTATCTGAGTGAAAAGCACAAGCATAAGCTCAAGGAAGAGTATGGCATTGAGCCTTGGACATTTGAGCAACACCTTGGCGAGGCTGTTTTTATTCCTGCCGGATGCCCCCATCAAGTGAGAAATCGACAGTCGTGCATTAAGGTTGCTCTTGATTTTGTTTCCCCGGAGAATGTTCAAGAGTGCATTCGATTGACAGAGGAGTTTCGGTTGCTCCCAAAAAACCATAGATCCAAAGAGGATAAACTAGAGGTGAAAAAGATGGCATTGTATGCGGTTGATAGTGCTGTGAAAGAAGCCAAAGATCTGATCTCGGAAATGCATTTGCAAGCGGCACCTTCTGTTTCACTTCTGTTAAGCAAATCTCCCGAAGAGCACTCCTCTGCAACAGCTCATTTCTCCGAAGCACGAAAGCGACGACGACAACTTGAAGGCAAAGGTGTTGACGAAGGTGACCTCCAATCGGGCGAAGACAAACCCTGCTTTTTCGAATGCGACCCCGGGCTCGGCGAAAGTAACCCCTTCTCTGCGAAGATCGAAGAGACTCGTCTTCAAGCCCCTTGCAGCTCAATTAGAACCGAAAATAACGGTCCAGTTCTCGGTTCCAGCTTCGCAGCACCGAAGAACGGGTACCGATCGAGAGAGGGCTTAATTAGGGCAGGGACCCTAGCTCTCAGCACTCAGCACTATGCAGACCCAATTCTCGAACGAAGACGCTCCCGACTCTCCTGCCTCCTGAGTCCCGAGCTCTCCAGTCTCCCCTCCAGAGTCCCGACTCCCGAGTCTCCCGATCCCCAACCCGAACAGCGACCGAACGACGTTCGTCTTTCTGTTCCTCTTGATGTCTTCCTTCCGTCAACTGAGAGCTTGCCAGACACCAGTTGA 4815 42.97 MVLSNVENEVGVLDQAQKERNYGNVMIGENGLVIEVDGQRETAKIPCRIENMEGEDVNLGGEGILGHYGGSCGISRENGGQNFVGNESTLQLWSGEDSCFYHGGEVGVGASREAHFGKIEHGFGEVVKVGGSVSEACEMDNFGLCGERIRAIFGETSDRNDSLSHDEERFQDVFGEVNGGKRDLNLGWCTDIVNQSVPMLSGEHESVIGGARTEFDDYGGKSGAEVTISLGKKRGRPMGSKNRPKLINAEEKKIGIELASSSVREHGKRGRPKGSKNKMKTQTNDGVQGLFIQVNGGNGGETMGLDCRTASFQGGDSIDYNQSKTVIIWPNFKHGRGRGRPKGSKNKKKLRGCENSKVTSEIKAANDYGEKETWPTFDVINDVRIPCTGTVGNEGGDEMVKAKRKPGRPKGYMSNKKSFIDGECGNKSLASKDGDDGSIHLLSLDDGPFRTYPSASFCINDNETKTVQPRQGRGRGWGRLQSDRPMSEAQTMAKVFGENVQSENKGGRPRGSENKKILVSGKNISTAPCTMRDRGMFDEVTFGNVGENKFAQTEYKCIRTTEVMIKKEQTIADKDHEALKAMDKKDNVDESLTYKLRSRTISSKSFPGANKVVARLKRTWRNLMCHQCRNDRSGVIECPNCKRRRYCHSCLQKWYPQLVSEGLKKGCPFCRGFCNCSLCLNKNLVVKSEQTDKNVRLKKLLHVLHYTLPLLRHVQWEQKAELDIESSIQGIVLTEEDVIKAVLDDDDRIYWYLLIFLKPYFALCISSSYFLTMPLDDNCSTSIVNFHRSCSNPECSYDLCLTCCRELREGFGVGGSKKEEALDQEFSQISHGQEWKAEVDGRIFCPPSMQGGCGSKVLILRRIFEANWIEKLILSAEDLTVNYKSSLPHFSQVCTLCHPKGSVDKKSCAENGEEICEARQAAYRENSNDNYLYCPNAVLLKDNDIEHFQMHWSRGNPIIVRNVLKNASGLSWEPMVMWRAFKGARKVLKEEAVRVRAINCLDWCEVEINISKFFKSYSEGRRYRDGWPEMLKLKDWPTSNTFEQCLPRHGAEFIAMLPFSDYTHPKFGILNLATKLPVLLKPDLGPKTYIANGFIEELGRGDSVTKLHCDISDATDEICGSNYSSTSLIDPNASVLPCHLPNDMIDYTSGLCHDGNISTHSQIVEDPCLDLNYFASNGDEFPSSNEKISVLTSLFNGNSSKSEVASDLSCLAVENVHSAVGHETNKQASNNGDIFQAPLISVEKPDLNSIGDLSRINGCPEIEYGGAVWDIFRRQDVPKLIEYLNKHQEEFCHINNLPVNSVNHPVHDQTLYLSEKHKHKLKEEYGIEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVQECIRLTEEFRLLPKNHRSKEDKLEVKKMALYAVDSAVKEAKDLISEMHLQAAPSVSLLLSKSPEEHSSATAHFSEARKRRRQLEGKGVDEGDLQSGEDKPCFFECDPGLGESNPFSAKIEETRLQAPCSSIRTENNGPVLGSSFAAPKNGYRSREGLIRAGTLALSTQHYADPILERRRSRLSCLLSPELSSLPSRVPTPESPDPQPEQRPNDVRLSVPLDVFLPSTESLPDTS 1604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 306465 317868 + BLOR20942 Blo09g00027 64654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00027 1604 MobiDBLite consensus disorder prediction 1436 1465 - -
Blo09g00027 1604 MobiDBLite consensus disorder prediction 396 418 - -
Blo09g00027 1604 SMART cupin_9 1046 1380 IPR003347 -
Blo09g00027 1604 MobiDBLite consensus disorder prediction 1438 1465 - -
Blo09g00027 1604 Gene3D Cupin 930 1129 - -
Blo09g00027 1604 Gene3D Cupin 1192 1389 - -
Blo09g00027 1604 ProSiteProfiles JmjC domain profile. 1053 1380 IPR003347 -
Blo09g00027 1604 MobiDBLite consensus disorder prediction 332 354 - -
Blo09g00027 1604 SUPERFAMILY Clavaminate synthase-like 944 1410 - -
Blo09g00027 1604 MobiDBLite consensus disorder prediction 260 282 - -
Blo09g00027 1604 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 229 1424 IPR045109 GO:0032454|GO:0033169
Blo09g00027 1604 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 623 705 IPR018866 -
Blo09g00027 1604 SMART AT_hook_2 503 515 IPR017956 GO:0003677
Blo09g00027 1604 SMART AT_hook_2 403 415 IPR017956 GO:0003677
Blo09g00027 1604 SMART AT_hook_2 231 243 IPR017956 GO:0003677
Blo09g00027 1604 SMART AT_hook_2 266 278 IPR017956 GO:0003677
Blo09g00027 1604 SMART AT_hook_2 335 347 IPR017956 GO:0003677
Blo09g00027 1604 MobiDBLite consensus disorder prediction 1560 1604 - -
Blo09g00027 1604 ProSiteProfiles Zinc finger RING-type profile. 625 671 IPR001841 -
Blo09g00027 1604 PANTHER ENBP1 PROTEIN 229 1424 - -
Blo09g00027 1604 Pfam JmjC domain, hydroxylase 1266 1363 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00027 K15601 KDM3; [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65] - pop:7475185 932.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00027 Blo-Chr9:306465 Blo13g00990 Blo-Chr13:32305339 3.86E-168 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1040 . . . . . . . Bma14g02007 . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0983 . . . . . . . . Blo09g00027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004873 1 3 1 1 0 1 1 0 1 1 1 0 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 8 2 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12748 PF02373 JmjC 2.60E-16 CL0029 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00027 Blo_Chr09 FPKM 6.496786 6.658614 0.422234 0.561929 2.530555 2.743299 2.650313 2.201494 2.364969 2.451878