Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00035 ATGTCTCACATGGTTACCCATGACCGACTTTTATCGGGCCCAAAATCACTCGTTTCGGTCCTCAAATCTGCAGTTGAAGATTTTAGAATAGAAACCGGTTTGGAACTGGAACTGCAAGGAGCTGGATTGGTCGGTTCCAAAAGCTCTGGAATTGGAACCGAGAATCGGTTTGCCCACCCCCAGCTAACTCCTATCCACGCCAAGATGGCTCGCCGGAGAAGACTCAGAGTACGGCGGCTGAGATGCTCGTGGCCAAGGAAAACTAAGCCCACGCTCTCCGGTGAAGAAAACTCCTCAGGCGATGTAGAGAACTCCTCTTCCGACCAATCTCCGACGCTTGTTTCTTCCCCAGATTGTTTATCGGAAACTGAACTGGTACTTTGTGGCGCCGGGGATAAAGAGAAGGAGAGTGATTCTCCATCCATAGTTTACAGCAGTGTGTCGATTACTGGTCGGAGGAGGGAGATGGAAGATGAGGTGAGCGTGGAGTTAAAGTTTGCCACGAAGGATGGTGCGAAGTTTGATTTCTTCTCCGTGTACGACGGCCATGGAGGCGCTGAGATCGCCCGGATTTGCCAAAAAAGGCTGCATAGGGTAGTTGCGGAGGAAATAGAGGGAGAGAAAGGAAAGCAGGTGGGGTGGGAGAGAATGATGGAAAAATGCTTCGGAAGAATGGACGATGAGGTGATTGCCGGTCCGGCAGCATTGAAGACGGTTGGTTCGACTGCAGTTTTGGCGGTGGTGGGGCCGGAGGAGGTGGTGGTTGCCAATTGCGGAGACTGCAGGGCGGTGTTGGCGAGGAATGGTGCTTCATTAGCCTTGTCTAATGATCATAAGCCTGACAGGGCCGATGAAATGGAGAGAATCGAGGCTGCTGGAGGCAAAGTTATAAATTGGAACGGCTGTCGTGTTCTCGGAGTTTTAGCTACATCGAGATCTATAGGGGACGAGTATCTTAAACCCTTCGTGATCTCGAAACCGGAAGTGACGGTGACTAAGCGAACAAGCAAAGACGAGTTCCTCATCCTAGGAAGTGATGGGCTTTGGGATGTTGTCTCAAACGACCTTGCATGCCAAGTGGTAAGAAGAGTCCTTGGCGGCCATAGGCGGAAGATTGCATCCCCAACGATGATGCCGAACGGAAGGCTTGCGGTTGATGCAGCCACGGTGTTGGCCGAGCTAGCAATAGCTAAAGGCAGTGGAGATAACATAAGTGTGATAGTAGTTGAGCTTCAAAAGCCAAGCAAAGAGGAGTTCCTCATCCTAGGAAGCGATGGGCTTTGGGATGTTGTCTCAAATGACCTTGCATGCCAAGTGGTAAGAAAAGTACTTGGTGGCCATAGGCGGAAGATTGCATCCCCTACGACAATGCCGAACGGAAGGCTTGCGGTTGATGCAGCTACAGCGTTGGTCAAGCTAGCAATAGCCAAAGGCAGTAGAGATAACATATCTGCGATGGTAGTTGAGCTTCAAAAGCCAAGTAATTTTTATTCTCTTTAG 1500 50.4 MSHMVTHDRLLSGPKSLVSVLKSAVEDFRIETGLELELQGAGLVGSKSSGIGTENRFAHPQLTPIHAKMARRRRLRVRRLRCSWPRKTKPTLSGEENSSGDVENSSSDQSPTLVSSPDCLSETELVLCGAGDKEKESDSPSIVYSSVSITGRRREMEDEVSVELKFATKDGAKFDFFSVYDGHGGAEIARICQKRLHRVVAEEIEGEKGKQVGWERMMEKCFGRMDDEVIAGPAALKTVGSTAVLAVVGPEEVVVANCGDCRAVLARNGASLALSNDHKPDRADEMERIEAAGGKVINWNGCRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTSKDEFLILGSDGLWDVVSNDLACQVVRRVLGGHRRKIASPTMMPNGRLAVDAATVLAELAIAKGSGDNISVIVVELQKPSKEEFLILGSDGLWDVVSNDLACQVVRKVLGGHRRKIASPTTMPNGRLAVDAATALVKLAIAKGSRDNISAMVVELQKPSNFYSL 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 465676 469371 + BLOR20950 Blo09g00035 64662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00035 499 MobiDBLite consensus disorder prediction 86 118 - -
Blo09g00035 499 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 416 492 - -
Blo09g00035 499 PANTHER ALPHABET, ISOFORM E-RELATED 114 413 - -
Blo09g00035 499 ProSiteProfiles PPM-type phosphatase domain profile. 143 411 IPR001932 -
Blo09g00035 499 PANTHER ALPHABET, ISOFORM E-RELATED 416 492 - -
Blo09g00035 499 Pfam Protein phosphatase 2C 415 483 IPR001932 -
Blo09g00035 499 Pfam Protein phosphatase 2C 144 404 IPR001932 -
Blo09g00035 499 SMART PP2C_4 134 409 IPR001932 -
Blo09g00035 499 SUPERFAMILY PP2C-like 140 413 IPR036457 -
Blo09g00035 499 CDD PP2Cc 142 411 IPR001932 -
Blo09g00035 499 MobiDBLite consensus disorder prediction 90 118 - -
Blo09g00035 499 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 114 413 - -
Blo09g00035 499 SUPERFAMILY PP2C-like 415 492 IPR036457 -
Blo09g00035 499 Gene3D - 416 496 IPR036457 -
Blo09g00035 499 Gene3D - 139 415 IPR036457 -
Blo09g00035 499 ProSitePatterns PPM-type phosphatase domain signature. 176 184 IPR000222 GO:0043169
Blo09g00035 499 ProSiteProfiles PPM-type phosphatase domain profile. 408 490 IPR001932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00035 K14497 PP2C; protein phosphatase 2C [EC:3.1.3.16] - csv:101214188 371.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00122 Blo-Chr4:1023845 Blo09g00035 Blo-Chr9:465676 3.15E-12 dispersed
Blo09g00035 Blo-Chr9:465676 Blo13g01063 Blo-Chr13:32859847 2.45E-06 dispersed
Blo09g00035 Blo-Chr9:465676 Blo13g00881 Blo-Chr13:31347934 6.88E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g883 . . . . Bpe03g00182 . . . Cmo16g00068 . . . . . Sed07g0841 . Cpe14g00050 Bhi01g01472 Tan01g0125 Cmetu06g1353 . Hepe07g0077 Mch10g0077 . . . . . . . . Cone1ag0966 Cone5ag0672 . . . . . Cme06g01115 . Blo09g00035 . . . . . . . . . Cma16g00062 . Car16g00056 . . Cpe13g00356 . . . . . . . Cla05g00958 Cam05g1049 Cec05g1054 Cco05g1048 Clacu05g1042 Cmu05g0992 Cre05g1069 . Csa03g02203 Chy06g01234 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006690 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 1 1 1 1 1 1 1 1 1 2 3 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00035 Blo_Chr09 FPKM 34.37133 39.50552 38.738621 37.575638 90.555183 71.380737 89.681343 56.278751 53.271851 52.699673