Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00046 ATGATGGTGGCCACATCCTCTGTGTTTTGTGGGGATTCTGATTGTGTCAATAGAGAAGGAGGGGAATGTAGTTCTAGTTTTGACTATCTGGCTAGTCCCTCTTCATGCATTCATCAAGCAATTGTCGTGTTCTTCAATGTTGTTCTTTTACTCGTGCTCTTGTTGGTGTTGCTGAGGAGGAAATATATATCTACCATTCGATTCCATAGCTATTCAAATTGGGAAATTTGTGTAGCGCTTTTCAATGTTTGTATCGGATTGACGTATTTGGGCTTGGGAGTTTGGGAATTAGAAGAAAGTTGGAGGAAAATGCACACCGCTCTGCCTCTGAATGTATGGTTCTCCACAAGTTTTCAGGGTTTGACTTGGGTTCTGGTGAATATAATCATAATTACACGAGGCAAACAACTTCCGGGAGCGATTCTTCACCTTTTGTCTGTGCTTGCAGTTGCATTTTCTACCATAATTTGTGCTTTATCACTGGCTTCTTTCATGGCCAGCAAGGTTTTATCATTGAAGATAGCTTTGAATGTTTTATCGTTTCCAGGAGCATTTCTCTTGATGATTTGCACTTATAAGATGGCCAAATTTGAAGCCAGTGAGTTGAGTTTGGAGGAAAAGGACCTCTATACGCCTTTGAACGGCGAGGTGAATAGAATTAGCTCTATTGATCCTGTCACTCCGTTTGCTAAGGCCGGATTCTTTAGCAGAATGTCGTTTTGGTGGTTGAATTCTTTGATGAAAAGAGGAAGAGAAAAAACTCTCGAGGACAAAGATATTCCCAAGTTATGCCAAAAAGATCGAGCGGAGAATTGTTATATGAAGTTCTTAGAAAAATTGAACAAGCAAAAGCAAGTGGAACCATCTTCGCAGCCGTCGATCTTGAGGACGATAATCCTATGCCATTGGAAGGAGATTTTAATATCCGGGTTTTTTGCGCTTTTGAAGATTCTCACTGTCTCTGCAGGCCCTCTTCTTCTCAATGCCTTCATTTCAGCTGCAGAGGGAAATTGGAGCTTTAAATATGAAGGCTATGTTCTTGCTTTGTTTCTTTTTCTCTCGAAGAGCATCGAATCCTTTTCGCAAAGACAGTGGTATTTTAGGAGCAGGCTCATAGGTCTGCAAGTCAAGTCTTTACTTACAGCTGCCATTTTCAAGAAGCAATTGAAGTTATCAAATGCTGGAAAGTTGATCCATTCAGGAGGTGAGATTATGAATTATGCAACAGTCGATGCCTATCGAATCGGAGAATTTCCATATTGGTTCCATCAAACTTGGACAACGAGCCTGCAGCTCTGCATTGCTCTTGTAATTCTATTCCATGCCGTTGGGTTGGCAACGATTGCAGCTTTAATCACGATTGTTCTATGCGTTCTCTGCAATGCCCCGATCGCTAAATTGCAGCTTAAATATCAGACCAAGCTCATGCTGGCCCAAGATGAGAGATTGAGAGCTTGTAATGAAGCTCTTATCAACATGAAAGTTCTTAAATTATACGCATGGGAGACTCATTTCAAACAAGCGATCGAGAAATTGAGGAAAATTGAGTGTAAATGGTTGTCGGGAGTGCAGCTTCGAAAGTCTTATAATGGTTTTCTCTTTTGGACATCTCCAGTGTTGGTCTCGGTTGCTACCTTTGGAGCTTGTTACTTCCTTAAAGTTCCTCTATATGCAAGTAATGTTTTCACCTTTGTTGCTACTTTACGGCTTGTTCAAGACCCGATTCGATCTATCCCTGATGTCATTGGAGTCGTCATTCAAGCTAAAGTTTCATTTGCTCGTATTTTGAATTTTCTTAAGGCGCCTGAACTTCATAGCACAAACGCTCGCCAAAAGTGGAATGTAGAGAGTTTAAGCCATGCCATTTTCATAAACTCGGCGGATTTTTCATGGGAAGAGAATTCCCCCAGGCCGACACTTAGGAATATTGATTTGGTTGTTAGGCCAGGCGAAAAGGTGGCTATCTGCGGCGAAGTTGGCTCGGGGAAATCGACTCTTCTTGCAGCAATTCTCGGTGAAATTTCAAAAATTAAAGGGGAAATTCAAGTTTATGGGAAGGTAGCTTATGTTTCTCAAACGGCATGGATTCAAACGGGGACGATACAAGACAACATTTTATTTGGCACCAAGATGGATTTGGAAAGATATCAAGAAACACTCGAGATGTGTTCGTTGGTAAAGGATCTCGAGTCGTTTCCTTATGGCGATCTAACCGAAATAGGAGAAAGAGGAGTGAATCTTAGTGGTGGTCAAAAGCAACGGATTCAACTTGCTCGAGCTCTATATCAAGATGCTGACATTTACCTCTTGGATGATCCATTTAGTGCTGTTGATGCTCATACTGCCACAAATTTGTTCAATGATTATGTTATGAAAGCGCTTTCGAGAAAGTCTGTTCTGCTTGTGACCCATCAAGTTGATTTCCTACCGACATTCGATTCCGTTTTGTTAATGTCAGATGGAGAAATCCGACAAGCTTCGTCTTACCATCAATTATTAGCTTCAAGTAAAGAATTCCAAGAACTAGTCAATGCACACAAGGAGACTGCCGGTACCGAACGGCTTGCCGACGTTACTGCTACCCAAAATGGGGAAACACCTTCTCGAGAGATCAAGATGACTTTCATGGAGAAAAAAGTAGCATCCTCCAATGGCAATCAATTAATCTTGCAAGAAGAAAGAGAAATAGGAGACACTGGATTCAAGCCTTACATTCAGTATCTGAATCAGAACAAAGGGTTCTTGTATTATTCATTGTCCATGCTCTCTCATCTTATATTCGTGATTGGACAGACTTCGCAAAACTATTGGATGGCGTCCAATGTCGACAATCCGAGTGTCTCCCCGTTGCATTTGATCGTAGTTTACTTGGTGATTGGAGTCTCTTCGACCGTTTTCTTATTGACTCGATCTCTAGCTTCTGTTACTTTAGGCCTTCAATCCTCAAAGTCATTGTTCTCTCAACTCTTAACCTCTCTTTTTCGGGCTCCTATGTCGTTTTACGACTCCACACCTATTGGAAGAGTACTTAGCCGGGTATCCTCTGATCTAAGCGTGATCGATCTCGATGTGCCATTCGCTTTAGTTTGGGCCACAGGGGCCACCATTAATGCTTATGCAAGTCTTGCAGTGCTGGCTGTGGTAACTTGGCAAGTTCTCTTCGTCTCCATTCCAATGCTTTATATCTCCATGCGCTTGAAGAGATATTACTTTGCCTCAGCTAAAGAATTGATGCGTATTAATGGCACGACCAAGTCGTTAGTAGCCAATCATCTGGCTGAGTCTGTGGCGGGGGCGATCACGATTCGAGCTTTCGAAGAAGAAGATCGATTTTTTGAGAAAAACCTCGACCTGATCGACATAAATGCAAGTCCTTTCTTCCACAATTTCTCGGCAAACGAGTGGTTGATTCAACGATTAGAAATGCTCAGTGCCACCATTCTTACCTCGGCTGCACTTGCCATAGTGTTGCTTCCTCCCGGAACCTTCAGCTCCGGATTCATTGGAATGGCACTTTCTTATGGACTTTCTCTCAATATCTCTTGGGTTTTTTCTGTACAAAATCAATGCACTTTGGCAAATCACATCATCTCTGTTGAGAGAGTCAACCAATATATGCATATACCCAGTGAAGCTCCAGAAGTGATCGAACAAAACCGTCCACCTCGCAGTTGGCCTTCCGTCGGCAAAGTGCAAATACTTGATTTGCAGATTCGATATCGGCCTAATGCGCCTCTCGTTCTTCGTGGGATTAGCTGCACATTTGAAGGCGGTCACAAGATAGGGATCGTTGGCCGGACTGGCAGTGGGAAGACTACTCTTATTGGATCTCTATTCCGGTTGGTGGAGCCCGCCGGAGGGAGTATAATTGTCGATGGGATTGACATATGCACGATTGGACTTCATGATCTAAGATCGCGATTCGGAATTATACCTCAAGATCCAACCCTTTTCAATGGCACTGTTAGATATAATTTGGACCCCTTGTCCCAACATTCCGACCAGCAATTGTGGGAGGTCCTCGGAAAGTGTCAGCTCCGAGAAGCTGTGCAAGAGAAAGGCGGCGGCTTGAACTCACCGGTTATGGAAGAAGGTTCAAATTGGAGCATGGGGCAGAGGCAGTTGTTCTGTTTGGGCCGAGCCCTGTTGCGAAGGAGTCGCGTATTGGTACTCGATGAAGCAACTGCGTCAATCGACAACGCAACCGATATGATTTTGCAGAAAACGATTCGGTCGGAGTTTGCAGATTGCACTGTAATCACAGTGGCTCATCGGATTCCGACGGTGATGGATTGCACGATGATTCTCGGCGTCAGTGATGGTAAAATTGTGGAGTACGATGAGCCGATGAAGTTGATGAAGAGGGAAGATTCACTGTTCGGGCAGCTGGTGAAAGAATACTGGTCTCGTTCTCAGACACCTGAATTGATATGA 4434 43.37 MMVATSSVFCGDSDCVNREGGECSSSFDYLASPSSCIHQAIVVFFNVVLLLVLLLVLLRRKYISTIRFHSYSNWEICVALFNVCIGLTYLGLGVWELEESWRKMHTALPLNVWFSTSFQGLTWVLVNIIIITRGKQLPGAILHLLSVLAVAFSTIICALSLASFMASKVLSLKIALNVLSFPGAFLLMICTYKMAKFEASELSLEEKDLYTPLNGEVNRISSIDPVTPFAKAGFFSRMSFWWLNSLMKRGREKTLEDKDIPKLCQKDRAENCYMKFLEKLNKQKQVEPSSQPSILRTIILCHWKEILISGFFALLKILTVSAGPLLLNAFISAAEGNWSFKYEGYVLALFLFLSKSIESFSQRQWYFRSRLIGLQVKSLLTAAIFKKQLKLSNAGKLIHSGGEIMNYATVDAYRIGEFPYWFHQTWTTSLQLCIALVILFHAVGLATIAALITIVLCVLCNAPIAKLQLKYQTKLMLAQDERLRACNEALINMKVLKLYAWETHFKQAIEKLRKIECKWLSGVQLRKSYNGFLFWTSPVLVSVATFGACYFLKVPLYASNVFTFVATLRLVQDPIRSIPDVIGVVIQAKVSFARILNFLKAPELHSTNARQKWNVESLSHAIFINSADFSWEENSPRPTLRNIDLVVRPGEKVAICGEVGSGKSTLLAAILGEISKIKGEIQVYGKVAYVSQTAWIQTGTIQDNILFGTKMDLERYQETLEMCSLVKDLESFPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATNLFNDYVMKALSRKSVLLVTHQVDFLPTFDSVLLMSDGEIRQASSYHQLLASSKEFQELVNAHKETAGTERLADVTATQNGETPSREIKMTFMEKKVASSNGNQLILQEEREIGDTGFKPYIQYLNQNKGFLYYSLSMLSHLIFVIGQTSQNYWMASNVDNPSVSPLHLIVVYLVIGVSSTVFLLTRSLASVTLGLQSSKSLFSQLLTSLFRAPMSFYDSTPIGRVLSRVSSDLSVIDLDVPFALVWATGATINAYASLAVLAVVTWQVLFVSIPMLYISMRLKRYYFASAKELMRINGTTKSLVANHLAESVAGAITIRAFEEEDRFFEKNLDLIDINASPFFHNFSANEWLIQRLEMLSATILTSAALAIVLLPPGTFSSGFIGMALSYGLSLNISWVFSVQNQCTLANHIISVERVNQYMHIPSEAPEVIEQNRPPRSWPSVGKVQILDLQIRYRPNAPLVLRGISCTFEGGHKIGIVGRTGSGKTTLIGSLFRLVEPAGGSIIVDGIDICTIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQQLWEVLGKCQLREAVQEKGGGLNSPVMEEGSNWSMGQRQLFCLGRALLRRSRVLVLDEATASIDNATDMILQKTIRSEFADCTVITVAHRIPTVMDCTMILGVSDGKIVEYDEPMKLMKREDSLFGQLVKEYWSRSQTPELI 1477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 728929 734414 + BLOR20961 Blo09g00046 64673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00046 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 845 IPR027417 -
Blo09g00046 1477 Gene3D ABC transporter type 1, transmembrane domain 295 596 IPR036640 GO:0005524|GO:0016021
Blo09g00046 1477 CDD ABCC_MRP_domain2 1229 1449 - -
Blo09g00046 1477 Gene3D ABC transporter type 1, transmembrane domain 879 1212 IPR036640 GO:0005524|GO:0016021
Blo09g00046 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1222 1462 IPR027417 -
Blo09g00046 1477 CDD ABC_6TM_ABCC_D1 308 595 IPR044746 GO:0140359
Blo09g00046 1477 Gene3D - 597 865 IPR027417 -
Blo09g00046 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 845 IPR003439 GO:0005524
Blo09g00046 1477 CDD ABCC_MRP_domain1 624 822 - -
Blo09g00046 1477 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 69 1475 - -
Blo09g00046 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1231 1465 IPR003439 GO:0005524
Blo09g00046 1477 Pfam ABC transporter 1248 1396 IPR003439 GO:0005524
Blo09g00046 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo09g00046 1477 Pfam ABC transporter 640 774 IPR003439 GO:0005524
Blo09g00046 1477 CDD ABC_6TM_ABCC_D2 913 1206 IPR044726 GO:0140359
Blo09g00046 1477 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 69 1475 - -
Blo09g00046 1477 Gene3D - 1214 1466 IPR027417 -
Blo09g00046 1477 ProSitePatterns ABC transporters family signature. 747 761 IPR017871 GO:0005524
Blo09g00046 1477 SUPERFAMILY ABC transporter transmembrane region 919 1211 IPR036640 GO:0005524|GO:0016021
Blo09g00046 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 925 1194 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo09g00046 1477 SUPERFAMILY ABC transporter transmembrane region 295 595 IPR036640 GO:0005524|GO:0016021
Blo09g00046 1477 Pfam ABC transporter transmembrane region 919 1167 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo09g00046 1477 Pfam ABC transporter transmembrane region 306 566 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo09g00046 1477 SMART AAA_5 649 822 IPR003593 -
Blo09g00046 1477 SMART AAA_5 1257 1449 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00046 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - qsu:112020205 2174.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00062 Blo-Chr5:596566 Blo09g00046 Blo-Chr9:728929 0 dispersed
Blo05g00463 Blo-Chr5:6904302 Blo09g00046 Blo-Chr9:728929 0 dispersed
Blo06g00821 Blo-Chr6:31467470 Blo09g00046 Blo-Chr9:728929 0 dispersed
Blo09g00046 Blo-Chr9:728929 Blo10g00056 Blo-Chr10:554622 0 dispersed
Blo09g00046 Blo-Chr9:728929 Blo11g00984 Blo-Chr11:24140665 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00046 Blo_Chr09 FPKM 1.526825 1.898908 1.021458 1.416639 6.189615 6.033162 6.87191 1.058415 0.980016 1.110624