Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00052 ATGGAGGAAGCACTGGTTCTGTACCCTTCTCCGGGGATAGGGCATCTCGTCCCCATGGTTGAGTTGGGCAAGCTTATCCTCAAGCGCCATCCTTTCTTCTCTATCAAAATCTTCATCCTCAATTCTCCTTACTCCGCTGGTTCCACCTCCGATTACATATCCGCCAATTCCGTACCGTCTCTAACCTTCCACCACCTCCCCACTCCCTCCCTACCTCCTTCCTCTCCTCAAATGGTCAAAGATCTCCTCTACCTGCTTCCTCGCCTCAACAACCCCGATCTCCGTAAAGCACTGGAGAAGATCTCAGAGACTTCCGTCGTTAGAGCTCTGATTATCGATGTCTTCAACGGCGCTGCTTTTGAAGTCGCCGGAGATCTGAATATTCCCGCTTACTATTTCTTAACAATCGGCGGCGGAATCCTGGCGAGCCTTCTGTACTTGCCCACTCTACACAAAATCACTACCGGAAATTTCAAAGACGACAAAGTTGTATTCAACATCCCCAGCTTACCTCCAATCCTCTCTTCCGATCTGCCGACTCCTCTGCAAATTCGCAACACGACCGCCTACAACAGTATGCTTAATACGGCAGTCCTACTCACTAAATCGAGAGGACTTTTAGTGAATACATTCACAGAGCTCGAACCAACAGCTATGGCGACTTTAACGAACGGTTTGTGCGTGAAAGACGGTCCTACGCCGCCGATCTTTGCAGTCGGACCAGTGAAAGCCAGCAGCGACTGGGGAAAAGAAGAAGAAGAACACGAATGCTTGAGGTGGCTGGATTCGCAGCCGAGGAAAAGCGTGGTGTTTCTTTGCTTCGGAAGTATGGGTTTGCATTCGGCGAAGCAGATAAGGGAGATGGCTATGGGGATCGAGAAAAGCGGGCATAGGTTCCTGTGGGTGGTCCGATCACCTCCGGAAGGACAAGAAGAAGAAGGGAAGAGCCAGACGGTAAGGACATGGCCGGAGCCGGAGTGGGAGAAACTATTGCCGGAGGGATTTGTGGGTCGGACTAAAAGCAGGGGAATGGTGGTCAAGTCGTGGGCTCCTCAGGTGGCAGTGTTGAATCATGATGCCGTCGGCGGCTTTGTCTCCCACTGCGGTTGGAATTCTCTCCTTGAAGCCATATCTGCAGGTGTGCCACTTCTGGCGTGGCCCCTGTACGCCGAGCAGAGAATGAACAGAATAATTTTGGTGGAGCAGATGAAGATAGGCTTGTCTGTGAACGAGTCAGAAGACGGGTTTGTCACTGCCGCCGAGCTGGAAGAGCGAGTGAGGGAATTGATGGAGACGGAGAGAGGAAGAGAGGTGAGGGAGAGGGTTGAGAGGATGAGAGATGAAGCTGTTGCAGCAATGGAGGAAGATGGCTCGTCTGTCCAAGCACTGGCTGAGTTGGCTAAGCTGTTGATGAAAGAGTCACAAGTTTAA 1431 51.64 MEEALVLYPSPGIGHLVPMVELGKLILKRHPFFSIKIFILNSPYSAGSTSDYISANSVPSLTFHHLPTPSLPPSSPQMVKDLLYLLPRLNNPDLRKALEKISETSVVRALIIDVFNGAAFEVAGDLNIPAYYFLTIGGGILASLLYLPTLHKITTGNFKDDKVVFNIPSLPPILSSDLPTPLQIRNTTAYNSMLNTAVLLTKSRGLLVNTFTELEPTAMATLTNGLCVKDGPTPPIFAVGPVKASSDWGKEEEEHECLRWLDSQPRKSVVFLCFGSMGLHSAKQIREMAMGIEKSGHRFLWVVRSPPEGQEEEGKSQTVRTWPEPEWEKLLPEGFVGRTKSRGMVVKSWAPQVAVLNHDAVGGFVSHCGWNSLLEAISAGVPLLAWPLYAEQRMNRIILVEQMKIGLSVNESEDGFVTAAELEERVRELMETERGREVRERVERMRDEAVAAMEEDGSSVQALAELAKLLMKESQV 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 872191 873759 + BLOR20967 Blo09g00052 64679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00052 476 Coils Coil 435 455 - -
Blo09g00052 476 PANTHER GLYCOSYLTRANSFERASE 1 471 - -
Blo09g00052 476 CDD GT1_Gtf-like 6 452 IPR002213 GO:0008194
Blo09g00052 476 Gene3D Glycogen Phosphorylase B; 255 454 - -
Blo09g00052 476 Gene3D Glycogen Phosphorylase B; 6 459 - -
Blo09g00052 476 ProSitePatterns UDP-glycosyltransferases signature. 349 392 IPR035595 -
Blo09g00052 476 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 253 433 IPR002213 GO:0008194
Blo09g00052 476 PANTHER GLYCOSYLTRANSFERASE 1 471 - -
Blo09g00052 476 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 472 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00052 - - K12938 oeu:111405618 486.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00928 Blo-Chr4:10987893 Blo09g00052 Blo-Chr9:872191 4.86E-78 dispersed
Blo06g00923 Blo-Chr6:32472215 Blo09g00052 Blo-Chr9:872191 1.32E-58 dispersed
Blo09g00052 Blo-Chr9:872191 Blo10g00921 Blo-Chr10:28174179 2.25E-80 dispersed
Blo09g00052 Blo-Chr9:872191 Blo16g00461 Blo-Chr16:18365421 1.44E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g799 . . . Bda07g01910 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo09g00052 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015390 4 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 1 12
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00052 Blo_Chr09 FPKM 8.720304 8.165606 10.045584 11.101894 7.711744 6.36629 8.222996 8.128098 7.497237 8.242572