Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00055 ATGGCGGATGATTGGGATCTGTACGCTGTAGTTCGCAGCTGTAAAGCCACAGCCACAAAGGCAGCTGCCATTAAAGCTCCAGAAGAAGCTTTCTCCAGCTTGGAGGCTTTTCTTTTAGAAGAAGAAGAAAAGGATGACCCATTTTCCTTTCCTAATCTCTTGGAGCAGACAACCAATGGATTTCAAGAATTACATCAACTTTGCCTGCCTTTTCTATCCGACACCATCTCCATTAACGAGCTAGAAACTTTGAATTCAAGGGTGAACTTACAGAAATATGATCATTCTGTAAATTCACCTTCTGCTTTAATGAAACAGCTAGAAGAAGAAGAAGATAAGCAGAAATCGCAGAATCAGAAGGATTTTCTTCAGCCAGATTTAGATTGCTCGCCCATCTCGCAGTCTCAAGTCCCTAGAACAAGAAGAAGGAAAATCCAGCAGGAGAGAATCGTATGCCAAGTAACAGCCGACAATCTCTCTACAGACATGTGGGCATGGCGGAAATACGGGCAGAAGCCCATTAAAGGCTCTCCACATCCAAGAAACTACTATCGTTGCAGCAGTTCCAAAGGGTGCTCAGCGAGGAAGCAAGTGGAGAGATCCACCTCCGACCGGAATATCTTCACCATAACCTACACCGGCGAACACACTCACCCTCCTCCGCTTCACAAGAATTCGCTAGCCGGAAGTACCAGGAACAAGATTCCAGCGACCGAGAAAACAGCCGCCGTTGCCAGTAATGCTTCTAGCTCTTCCCCAAGCGGCCTTTCTCCCACCACACCATTTGCAGTGGAAAACGAGGCAGAATCTATCAAAGAGACGTCCAATGGCGAAGGAGAGGAGCCCGATGAAGTAGCTATCAGTGAAGACGATAAAGACATTCTGATACCGAACATGGCGGAGATGAAGGACCCTGAAGAGTTTGGCTACGGCAGGGTTGGCTGTACTCGAGCTACTGGAGAAAAGTTGAGGAGTCCTAAGCCTCCCTGGAATCCAGATAGCTCTACTTCAGCGGGAGCAACGGCGAGTAGTGGTTCCTGGAAGTCGTCGCCTCAATTCGCAGGAAGGTGA 1071 47.99 MADDWDLYAVVRSCKATATKAAAIKAPEEAFSSLEAFLLEEEEKDDPFSFPNLLEQTTNGFQELHQLCLPFLSDTISINELETLNSRVNLQKYDHSVNSPSALMKQLEEEEDKQKSQNQKDFLQPDLDCSPISQSQVPRTRRRKIQQERIVCQVTADNLSTDMWAWRKYGQKPIKGSPHPRNYYRCSSSKGCSARKQVERSTSDRNIFTITYTGEHTHPPPLHKNSLAGSTRNKIPATEKTAAVASNASSSSPSGLSPTTPFAVENEAESIKETSNGEGEEPDEVAISEDDKDILIPNMAEMKDPEEFGYGRVGCTRATGEKLRSPKPPWNPDSSTSAGATASSGSWKSSPQFAGR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 922230 923481 - BLOR20970 Blo09g00055 64682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00055 356 SUPERFAMILY WRKY DNA-binding domain 156 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Blo09g00055 356 MobiDBLite consensus disorder prediction 289 310 - -
Blo09g00055 356 Pfam WRKY DNA -binding domain 162 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo09g00055 356 MobiDBLite consensus disorder prediction 106 141 - -
Blo09g00055 356 Gene3D WRKY domain 133 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Blo09g00055 356 MobiDBLite consensus disorder prediction 239 356 - -
Blo09g00055 356 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo09g00055 356 MobiDBLite consensus disorder prediction 329 356 - -
Blo09g00055 356 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 304 IPR044810 GO:0003700
Blo09g00055 356 MobiDBLite consensus disorder prediction 120 140 - -
Blo09g00055 356 MobiDBLite consensus disorder prediction 239 264 - -
Blo09g00055 356 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 304 - -
Blo09g00055 356 ProSiteProfiles WRKY domain profile. 155 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00055 K13425 WRKY22; WRKY transcription factor 22 - qsu:111994510 259.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00349 Blo-Chr2:3682413 Blo09g00055 Blo-Chr9:922230 2.37E-48 dispersed
Blo09g00055 Blo-Chr9:922230 Blo12g00237 Blo-Chr12:15143673 7.53E-48 dispersed
Blo09g00055 Blo-Chr9:922230 Blo16g00443 Blo-Chr16:17611158 8.71E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g787 . . . Bda07g01904 . . . . . . Cma02g01084 Cma15g01067 Car02g00825 Car15g00988 . Cpe05g00637 . . . . . . . . Cla01g00089 Cam01g0090 Cec01g0090 Cco01g0091 Clacu01g0088 Cmu01g0090 Cre09g2417 . . . . . Csa05g00101 . . . Blo09g00055 . . . . . . . . Cmo15g01124 . . . . . Cpe13g00277 Bhi12g00774 . . Lac11g0079 Hepe06g0728 . Lcy12g0061 . . . . . . . Lsi09g00076 . . Cme09g01938
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009671 2 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12751 PF03106 WRKY 4.20E-26 CL0274 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00055 Blo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0