Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00057 ATGGCTTTGCCTTTAGTGCCTTATACATTAGTAAAGCTTTCCCGTGCTGCCTCAAAGAAAGCTAAGATTTTACACTGCCAGTGCTCTGAATGCTCTAGTTCAGGGAAGTACCGGAAATCAATTTTTAAACGGATATCAAATTTCTCAACTTATAGCAACTTGACACTAGTACTTCTCTGGATCATCATGATTGTCTTGGTTTATTACATTAAAAGTATGAGTCATGAGACATTATGCCAAATTCATTTGCTGACAAATGATTGTTATGACTCCATTTCTTTCCCATTGAGGCTTTTTTCCTTACTAATTGTTAGCAATTTATTTGGGTTTCAAATGGGCATAGCTCTCCCTCAATTCCTGCTTAATATCGATGGGGCTTCTGGTGGAATTCTTTTACTGTGGATTGTTGGTGTTTGCATTCTTTTGCCACTTGTGATTGCTGTTGTGTATCTTTCAAGGTCATCAAAATATACTGGAAATTATGTCATGCATCAAACTTTGACCACTTATTATTATTTGATGAAGCCTTCTTTGGCGCCAAGGGTGTGGAGATATAATTCGTTGTCATCCCATATTCAAAGGGGAAGGATGTTAATTCATTTGGGCCCACTGATAGCAGAAAGTTTTATTTTTAAATTTCTTATCTTATGGTACAAAGTCATGGATGTCTTCATAAAAGCAGCAGAATATTTGGAAATTCCAGTTCGCAGGACTGACGATGAACCTCTCCAGAAGCTCTTCATGACAGTAAGGGGTGAGTTGAATCTTGACCATAAGAATCTTAAGCAAGAACAAGCAAAATTTTGGAAACAGCATCCGGGACTAGTCAAGACAGAGTTGTTGATTCAGGCTCATTTATCTCGGGAGTCTATGGATTTGCCACCATCTTTGCAAGTCAATTACAGACGTGTCCTAGAACTTGCCCCCCGACTTCTTGAAGAATTAATGAAGATGGCACTTATACCGCGGAACAATCAAGGTCAAGGATGGCTACGTCCTGCAACTGGGGTGATTGAGCTATCTCAATGCATCATTCAGGCTGTTTCTCTCAATGCAAGAAAGGCAACTGGAGGTTCGTCTGAAGGTATTGCACCCTTTCTGCAGCTGCCACATTTTAGTGAGACTATTATCAAGAAAATTGCCAGGAAGAAGGTGAGAACATTTGAGGAGCTTCGAGACATGAGCAGTGAAGATCGTGCTGACCTGCTTGCTCAAGTAGCAGGCTTCTCATCTGCTGAAGTACATGATGTTGATGTAGTTTTGGAAATGATGCCTTCTATAACAATTGAAGTTACTTGCGAGACTGAGGGCGAAGAGGGTATTCAAGAAGGCGATGTCGTCACTGTACATGCTTGGGTAACACTCCGTAGAAATAACAGTCTGGTCGGAGCCCTTCCACACGCACCCTATTATCCATTTCACAAGGAAGAAAATTTTTGGATTTTACTTGCAGACCCAGTTTCAAATAATGTCTGGTTTTACCAGAAAGTGAGTTTTATGGACGATGCCTCTGCACTGACTGCAGCTTCAAAGGCGATTGAGGAGCAAATGGAGGGATCTGGTGTAAGTGCCAAGGAAACAAGTGCTGCCATTAGAGAAGCAGTTGAGAAGGTGAAGAGTGGATCAAGATTAGTACTAGGCAAGTTCCAGGCTCCGGCTGAAGGAAACTACAATTTGATCTGTTATTGCTTATGTGACACGTGGATTGGCTGCGATAAAAAATCCAACTTGAAACTCAAAATTTTGAAACGCACCCGAGCCGGCACTCGGGGAGGCGTAGTGGCAGAAGAGGGGCCGAGCATAGAGGACGGGATCGAAGAGGAAGAGGAGAACGAAGAAGAAGAATACGATGATGATTACGAGAGTGAATATAGCGAAGACGAGGCAGAGGAGGCGGATAAAAAGAAGAAGAACACTGCTGTCAATGGCGCCGTCCATAAACAAGAGTCGAGCTCGGATGGGTCCGGCTCAGACGAGGAATGA 1983 42.56 MALPLVPYTLVKLSRAASKKAKILHCQCSECSSSGKYRKSIFKRISNFSTYSNLTLVLLWIIMIVLVYYIKSMSHETLCQIHLLTNDCYDSISFPLRLFSLLIVSNLFGFQMGIALPQFLLNIDGASGGILLLWIVGVCILLPLVIAVVYLSRSSKYTGNYVMHQTLTTYYYLMKPSLAPRVWRYNSLSSHIQRGRMLIHLGPLIAESFIFKFLILWYKVMDVFIKAAEYLEIPVRRTDDEPLQKLFMTVRGELNLDHKNLKQEQAKFWKQHPGLVKTELLIQAHLSRESMDLPPSLQVNYRRVLELAPRLLEELMKMALIPRNNQGQGWLRPATGVIELSQCIIQAVSLNARKATGGSSEGIAPFLQLPHFSETIIKKIARKKVRTFEELRDMSSEDRADLLAQVAGFSSAEVHDVDVVLEMMPSITIEVTCETEGEEGIQEGDVVTVHAWVTLRRNNSLVGALPHAPYYPFHKEENFWILLADPVSNNVWFYQKVSFMDDASALTAASKAIEEQMEGSGVSAKETSAAIREAVEKVKSGSRLVLGKFQAPAEGNYNLICYCLCDTWIGCDKKSNLKLKILKRTRAGTRGGVVAEEGPSIEDGIEEEEENEEEEYDDDYESEYSEDEAEEADKKKKNTAVNGAVHKQESSSDGSGSDEE 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 965908 970459 + BLOR20972 Blo09g00057 64684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00057 660 SUPERFAMILY E set domains 429 583 IPR014756 -
Blo09g00057 660 Gene3D C2 domain 427 588 IPR035892 -
Blo09g00057 660 PANTHER SEC63 DOMAIN-CONTAINING 1 77 - -
Blo09g00057 660 PANTHER SEC63 DOMAIN-CONTAINING 109 180 - -
Blo09g00057 660 SUPERFAMILY Sec63 N-terminal domain-like 219 424 - -
Blo09g00057 660 SMART Sec63_2 147 579 IPR004179 -
Blo09g00057 660 MobiDBLite consensus disorder prediction 600 628 - -
Blo09g00057 660 PANTHER DNAJ PROTEIN ERDJ2-LIKE 206 652 - -
Blo09g00057 660 PANTHER DNAJ PROTEIN ERDJ2-LIKE 1 77 - -
Blo09g00057 660 Gene3D - 364 423 - -
Blo09g00057 660 PANTHER DNAJ PROTEIN ERDJ2-LIKE 109 180 - -
Blo09g00057 660 Gene3D - 218 349 - -
Blo09g00057 660 PANTHER SEC63 DOMAIN-CONTAINING 206 652 - -
Blo09g00057 660 Pfam Sec63 Brl domain 219 577 IPR004179 -
Blo09g00057 660 MobiDBLite consensus disorder prediction 593 660 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00057 K09540 SEC63, DNAJC23; translocation protein SEC63 - csv:101209193 842.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00057 Blo-Chr9:965908 Blo10g00826 Blo-Chr10:26096718 6.36E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g785 . . . Bda07g01902 Bpe03g00158 . . Bma14g02040 Cmo16g00097 Cmo18g01308 . . . . . . Cpe14g00076 . . . . . . . . . . . . . . . . Cone14ag0052 Cone15ag0058 Lsi05g01183 . . Cme06g01046 . Blo09g00057 . . . . . . . . . Cma16g00092 Cma18g01277 Car16g00082 Car18g01191 Cpe09g00060 . . . . . . . . Cla05g00924 Cam05g1012 Cec05g1016 Cco05g1012 Clacu05g1001 Cmu05g0954 Cre05g1035 . Csa03g01758 Chy06g00986 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005404 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00057 Blo_Chr09 FPKM 4.670654 5.469325 20.675943 20.667416 6.431036 6.689772 7.123154 17.468025 17.69471 17.512648