Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00058 ATGTCTGGCCTTACCTTAGGACTCATGTCCCTTGGCCTCGTCGATCTAGAGGTCCTCTCCCGAGCAGGAAATCCACAAGACAGAAAAAATGCAGCTAAAATTCTACCTCTTGTTAAGAACCAGCACTTGTTGTTGTGCACTCTTCTCATAGGGAACTCCCTTGCAATGGAGGCCCTGCCTATATTTCTTGATGCTCTTCTTCCAGCTTGGGGTGCTATTCTAATATCGGTCACACTTATTCTTGCTTTTGGTGAGATAATCCCGCAAGCTGTTTGTTCGCGATACGGTCTGAGCGTCGGAGCAAAACTATCGGTGGTCGTCCGATTGCTTGTCTTACTTCTCTTTCCTCTCTCCTACCCCATTAGTAAGCTTCTGGATTTGCTCCTTGGGAAAAATCATGCTGCCTTATTACGAAGAGCTGAGCTTAAAACATTTGTAGATATGCATGGAAACAAGGAAGGGAAAGGGGGAGAGTTGACAAATGATGAAACAACGATAATAACAGGAGCTTTGGATATGACTTTGAAAACAGCTGAAGATGCTATGACTCCTCTCTCCAACATCTTCTCTTTGGACATCAATTCTAAGCTTGATGAGAAAACTATGGGATTGATCATGAGCCGAGGACATAGTCGAGTTCCCGTTTACTCTGGAAGCACCCAAAATATCATCGGACTTATTCTCGTTAAGAATCTCATCAAGTGTCGACCTGAAGACGAAACTCCCATTAAAGACCTCACCATTCGAAAAATTCCGAGAGTGCACGATAAATTGCCGTTGTATGATATGATGAATGAGTTCCAAAAAGGACACAGCCATATGGCCATTGTGGTTAGAAGCAACAAGGAAGTAAAAGAGATTGAAGAAAACAAAAGCAAAGAGGAAGTGGAGAAGAGGAGTGATGAAGTTGTTTTGGATGTAAAGCCAGAGCGTGATCCGAGTGAAGACATTATAGGAATCATTACTCTTGAAGATGTCATGGAAGAACTTCTCCAGATTTCTAGAAAATCATATGAGAAGCTGAGGCAGCCATTTGGATAA 1041 42.75 MSGLTLGLMSLGLVDLEVLSRAGNPQDRKNAAKILPLVKNQHLLLCTLLIGNSLAMEALPIFLDALLPAWGAILISVTLILAFGEIIPQAVCSRYGLSVGAKLSVVVRLLVLLLFPLSYPISKLLDLLLGKNHAALLRRAELKTFVDMHGNKEGKGGELTNDETTIITGALDMTLKTAEDAMTPLSNIFSLDINSKLDEKTMGLIMSRGHSRVPVYSGSTQNIIGLILVKNLIKCRPEDETPIKDLTIRKIPRVHDKLPLYDMMNEFQKGHSHMAIVVRSNKEVKEIEENKSKEEVEKRSDEVVLDVKPERDPSEDIIGIITLEDVMEELLQISRKSYEKLRQPFG 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 991173 995671 + BLOR20973 Blo09g00058 64685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00058 346 ProSiteProfiles CNNM transmembrane domain profile. 1 163 IPR002550 -
Blo09g00058 346 SUPERFAMILY CBS-domain pair 167 331 IPR046342 -
Blo09g00058 346 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 332 IPR045095 GO:0010960
Blo09g00058 346 Coils Coil 277 297 - -
Blo09g00058 346 Gene3D - 161 334 IPR046342 -
Blo09g00058 346 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 332 - -
Blo09g00058 346 ProSiteProfiles CBS domain profile. 182 243 IPR000644 -
Blo09g00058 346 CDD CBS_pair_CorC_HlyC_assoc 177 328 IPR044751 -
Blo09g00058 346 Pfam Cyclin M transmembrane N-terminal domain 1 157 IPR002550 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00058 K16302 CNNM; metal transporter CNNM K01866 csv:101210102 466.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00058 Blo-Chr9:991173 Blo13g00274 Blo-Chr13:13747496 1.62E-145 dispersed
Blo09g00058 Blo-Chr9:991173 Blo12g00909 Blo-Chr12:27268840 4.86E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g773 . . . . Bpe03g00157 . . . Cmo16g00103 . . . . . Sed13g0543 . Cpe14g00080 Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . Cone1ag1195 . . Cone15ag0060 Lsi05g01188 . . . . Blo09g00058 . . . . . . . . . Cma16g00096 . Car16g00086 . . . . . . . . . . Cla05g00919 Cam05g1007 Cec05g1011 Cco05g1007 Clacu05g0995 Cmu05g0950 Cre05g1031 . Csa03g01752 Chy06g00981 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007021 1 9 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00058 Blo_Chr09 FPKM 22.185633 27.174475 24.723269 20.859663 40.326927 32.033028 46.35043 24.956562 27.562046 33.763535