Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00062 ATGACTTTGTATGAGAGAGAAATAGCTTCTCTAGCAAGGCGTTTATACCAGCCATGGCTAAGTGTCGGTTTGAACATGCCTCACTCCAACTCTGGGCTTGACTCCATTGACTTAGCTCATCTTTCTTTCTCCCTGTTTTTTTTTAAACTCGTGGTGAAATTGGAAATCTACGATGAAAAAGCTAAACGAAAAGCAATGAAGATAGTCTCTGCCCTATCAGGTAACAATCAAAAACTCTTGAACACACTCGAATTTTCTTCTGTGTTCGGCGACCGACAGGTTATTGTCACAGGGGTTGAGTCAATCCACATAGAACTAAAAGACAGGAAGCTGACAGTAGTTGGAGACATCGATTCGGTGATTGTGGTGAGCAAATTAAGGAAGTTTTACCCGGCAGAAATAGTTTCAGTAGGGCCTGCGAAAGAAGAGAAGAAGGAAGGAGCAGCAAAGAAGGAAGAGACAAAAAAACCAGAGCAGAACAAGGCTGCTGCGAAAGATCCAGTGGCTGAGCTTGTCAAGCCCTATCAAGCCTATAATCCTTACATGAATACGCATTATTATTTGCCAGAAGGAAAAAGCTTGTTCTGCAAATCTGACTGTGCAGAGAGAGAAATAGCTTCTCTAGCAACTAGCAAGAAACTCGTGGTGAAATTGGAAATCTACGATGAAAAAGCTAAACGAAAAGCTATGAAGATAGTCTCTGACCTATCAGGGGTCGAGTCAATCCAAGTAGACCTAAAAGACAAGAAGCTAACAGTAGTTGGAGACGTCGATTCGGTGATTGTGGTGAGCAAATTAAGGAAGTTTTACCCGGCAGAAATAGTTTCAGTAGGGCCTGCGAAAGAAGAGAAGAAGGAAGGAGCAGCAAAGAAGGAAGAGACAAAAAAACCAGAGCAGAACAAGGCTGCAGCGAAAGATCCAGTGGCTGAGCTTGTCAAGGCCTATCATGCCCATAATCCTTACATGAATGCCCATTATTACGTCGGAAGTGCAGAGGAAGATCCAAATTCTTGTGTTATCTGTGCTTCATCTTCCTTTGCTCAAGATGATATTCCTACAGAAGATGATGATACTGCTTTGCCCACACTTCCCTCCGCATCATTACCTGGACCCTCTTCTCATCTTGCTCCTTCTCGACGTGCATCCTCATTCTCTACCTCTGACCTATCTAGACTAGAGGAGAAAATAAACTTTCAATCGGTCCACCTCCTTGCCTTTAAATCATGGGTTGTCGGCATGCTTGAGACTTTGAACCAATGCTATGAGGAGATATCTCAAGTCGTGTAG 1287 43.28 MTLYEREIASLARRLYQPWLSVGLNMPHSNSGLDSIDLAHLSFSLFFFKLVVKLEIYDEKAKRKAMKIVSALSGNNQKLLNTLEFSSVFGDRQVIVTGVESIHIELKDRKLTVVGDIDSVIVVSKLRKFYPAEIVSVGPAKEEKKEGAAKKEETKKPEQNKAAAKDPVAELVKPYQAYNPYMNTHYYLPEGKSLFCKSDCAEREIASLATSKKLVVKLEIYDEKAKRKAMKIVSDLSGVESIQVDLKDKKLTVVGDVDSVIVVSKLRKFYPAEIVSVGPAKEEKKEGAAKKEETKKPEQNKAAAKDPVAELVKAYHAHNPYMNAHYYVGSAEEDPNSCVICASSSFAQDDIPTEDDDTALPTLPSASLPGPSSHLAPSRRASSFSTSDLSRLEEKINFQSVHLLAFKSWVVGMLETLNQCYEEISQVV 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1085705 1099166 - BLOR20977 Blo09g00062 64689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00062 428 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 96 184 - -
Blo09g00062 428 MobiDBLite consensus disorder prediction 143 163 - -
Blo09g00062 428 SUPERFAMILY HMA, heavy metal-associated domain 216 269 IPR036163 GO:0046872
Blo09g00062 428 Gene3D - 48 143 - -
Blo09g00062 428 Gene3D - 208 283 - -
Blo09g00062 428 MobiDBLite consensus disorder prediction 365 386 - -
Blo09g00062 428 MobiDBLite consensus disorder prediction 143 164 - -
Blo09g00062 428 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 213 341 - -
Blo09g00062 428 PANTHER ION-BINDING PROTEIN, PUTATIVE-RELATED 96 184 - -
Blo09g00062 428 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 48 76 - -
Blo09g00062 428 MobiDBLite consensus disorder prediction 281 303 - -
Blo09g00062 428 Pfam Heavy-metal-associated domain 221 267 IPR006121 GO:0046872
Blo09g00062 428 PANTHER ION-BINDING PROTEIN, PUTATIVE-RELATED 213 341 - -
Blo09g00062 428 MobiDBLite consensus disorder prediction 351 386 - -
Blo09g00062 428 PANTHER ION-BINDING PROTEIN, PUTATIVE-RELATED 48 76 - -
Blo09g00062 428 MobiDBLite consensus disorder prediction 281 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00062 - - - pvy:116127976 156.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00212 Blo-Chr1:2771610 Blo09g00062 Blo-Chr9:1085705 8.76E-31 dispersed
Blo03g00351 Blo-Chr3:7768245 Blo09g00062 Blo-Chr9:1085705 2.14E-17 dispersed
Blo03g00352 Blo-Chr3:7780574 Blo09g00062 Blo-Chr9:1085705 9.46E-19 dispersed
Blo03g01144 Blo-Chr3:37844746 Blo09g00062 Blo-Chr9:1085705 3.22E-12 dispersed
Blo07g00372 Blo-Chr7:6054325 Blo09g00062 Blo-Chr9:1085705 2.78E-16 dispersed
Blo07g00373 Blo-Chr7:6106251 Blo09g00062 Blo-Chr9:1085705 2.91E-27 dispersed
Blo09g00062 Blo-Chr9:1085705 Blo16g00440 Blo-Chr16:17451868 4.66E-15 dispersed
Blo13g00461 Blo-Chr13:25166804 Blo09g00062 Blo-Chr9:1085705 1.44E-10 dispersed
Blo09g00061 Blo-Chr9:1069830 Blo09g00062 Blo-Chr9:1085705 1.59E-72 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g766 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo09g00062 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021461 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00062 Blo_Chr09 FPKM 11.826731 11.991588 8.256973 7.929838 12.079632 12.818731 12.728838 11.352531 10.237879 10.063434