Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00070 ATGGAGACGCCACTGCTGAACGGCGTTGCGGAGGGTGATTATGAGGCGGTGAGGAGCATTAAACAGGCGAGGGAGATGATTTGGGCAGAGACGGTGAAGCTATGGAGGATTGGAGGTCCTATTGCTTGCGCTATACTTTGTCAGTACGGAACCAACTCTCTCACTAATATTTTCGTCGGCCATATCGGAGATATTGAGCTCTCTGCCGTCTCCATTTCTCTCTCCGTCATCGGAACTTTCTCCTTTGGCTTCATGCTTGGTATGGCAAGTGCATTGGAGACCCTTTGTGGGCAAGCATTTGGAGCACGAAAATTTCATTTGCTTGGAATCTACATGCAGAGATCATGGATAATCTTATTTGTCACTTGTATAATTCTCCTACCAATTTACATCTTCGCCACTCCAATTCTTATCGCACTCGGACAAGACAGATCGATTGCGGATTTAGCTGGAAAATTCTCAATCTTAGTAATCCCTCAACTTTTCTCTCTTTCCATAGCCTTTCCCACCCAGAAATTCCTCCAAGCTCAGAGAAAAGTCAATATGATTGCCTGGATTGGCTTCTGCGCCCTGTTGTTACACGTCTTTATGCTTTGGCTCTTCATTTATGTGTTCAAATGGGGCACAACTGGCGCGGCGGTGGCCTATGATATCACCAATTGGCTGCTTGCTTCGGCCCAAGTCACTTATGCTGTGGGGTGGTGTAAAGATGGGTGGACTGGCCTGTCTTGGTCTGCTTTTAAAGAAATCTGGGCTTTTGTTAGGCTATCTATTGCCTCTGCTGTCATGCTTTGTTTGGAACTTTGGTATATGATGAGTATTATTATTCTCACAGGACATCTTGACAATGCCGTCATCGCAGTCGGATCGCTTTCCATCTGTATGAATATCAATGGAATTGAGGCCATGATTTTCATTGGAATAAATGCTGCCATAAGTCGTTTATCCTATTTCAGTGTTCGGGTCTCAAACGAACTTGGCCTCGGCCATCCAAGAACTGCGAAATATGCAGTCTACGTGACGGTTCTTCAGTCTCTCCTCATTGGGATACTTTGCATGATCGTCATATTGTTAACAAAAAACTACTTCTCTGTCATATTCACGAGTAGTAAAAACATGCAAGAAGCGGTTTCTCATCTTGCATTTCTTCTTGGCATCACGATGGTTCTCAATAGCGTGCAACCCGTTATTTCCGGAGTTGCTATTGGAGGAGGATGGCAAGCTTTGGTTGCATATATTAACCTTGGGTCGTACTACATTATCGGCCTCCCCCTCGGATATCTACTCGGATACAAAGCGAATTTAGGCGTGAAGGGACTTTGGGGAGGAATGATATGTGGAACTGGTTTACAAACCTTAGTACTTCTGTATGTACTTTATAGAACAAACTGGAACAAAGAGGTGGAAGAGACAACAGATCGATTGCGGAGATGGGGTGGGCAGGACTTGAACTCGGAGGAAATAGTCGACAATGCATGA 1479 44.9 METPLLNGVAEGDYEAVRSIKQAREMIWAETVKLWRIGGPIACAILCQYGTNSLTNIFVGHIGDIELSAVSISLSVIGTFSFGFMLGMASALETLCGQAFGARKFHLLGIYMQRSWIILFVTCIILLPIYIFATPILIALGQDRSIADLAGKFSILVIPQLFSLSIAFPTQKFLQAQRKVNMIAWIGFCALLLHVFMLWLFIYVFKWGTTGAAVAYDITNWLLASAQVTYAVGWCKDGWTGLSWSAFKEIWAFVRLSIASAVMLCLELWYMMSIIILTGHLDNAVIAVGSLSICMNINGIEAMIFIGINAAISRLSYFSVRVSNELGLGHPRTAKYAVYVTVLQSLLIGILCMIVILLTKNYFSVIFTSSKNMQEAVSHLAFLLGITMVLNSVQPVISGVAIGGGWQALVAYINLGSYYIIGLPLGYLLGYKANLGVKGLWGGMICGTGLQTLVLLYVLYRTNWNKEVEETTDRLRRWGGQDLNSEEIVDNA 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1209648 1214628 + BLOR20985 Blo09g00070 64697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00070 492 TIGRFAM matE: MATE efflux family protein 40 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo09g00070 492 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 474 - -
Blo09g00070 492 PANTHER PROTEIN DETOXIFICATION 12 474 - -
Blo09g00070 492 CDD MATE_eukaryotic 30 470 IPR045069 GO:0042910|GO:1990961
Blo09g00070 492 Pfam MatE 40 199 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo09g00070 492 Pfam MatE 260 428 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00070 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - pvy:116139562 752.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00070 Blo-Chr9:1209648 Blo09g00072 Blo-Chr9:1303472 0 dispersed
Blo17g00107 Blo-Chr17:962407 Blo09g00070 Blo-Chr9:1209648 7.45E-131 dispersed
Blo09g00070 Blo-Chr9:1209648 Blo09g00071 Blo-Chr9:1234594 0 tandem
Blo02g00364 Blo-Chr2:4006784 Blo09g00070 Blo-Chr9:1209648 0 transposed
Blo05g00497 Blo-Chr5:8328459 Blo09g00070 Blo-Chr9:1209648 0 transposed
Blo07g00394 Blo-Chr7:6821864 Blo09g00070 Blo-Chr9:1209648 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g741 . . . Bda07g01895 Bpe03g00147 . . . . . . . . Car15g00995 . . . . . . . . . . . . . . . . . . . . . . . Chy09g01381 . . Blo09g00070 . . . . . . . . . . . . . . Cpe13g00267 Bhi12g00020 . . . . . Lcy12g0048 . . . . . . . Lsi09g00087 . . Cme09g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000562 2 4 7 5 5 3 4 3 3 4 3 3 4 3 4 4 3 5 4 3 3 5 3 3 3 3 3 3 3 3 108
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00070 Blo_Chr09 FPKM 1.334951 1.587459 3.059017 2.13324 7.706382 7.377894 9.446854 0.917391 1.046639 0.675163