Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00074 GGTGGTGGTGGTGGGGGATTTAGGGGCGGTAGAGGCGATGGAGGTAGGGGAAGAGGAAGAGGATTTGGGGGTGGAAGAAGCGGGGATAGAGGAAGTTCCATGAGAGGCCGTGGTGATAGCCGAGGTAGAGGCCGCGGAGGGGGAAGAGGAAGAGGAGGAGGAGGAATGAAAGGTGGAAGCAAGGTTGTGGTGGAGCCCCATAGACACGAGGGAATATTCATAGCTAAGGGAAAGGAAGACGCTCTGGTTACGAAGAATATGGTGCCTGGTGAAGCTGTCTACAATGAGAAACGAATATCTGTTCAGAATGAAGATGGAACAAAAGTAGAATACAGGGTTTGGAACCCTTTCCGTTCAAAGTTGGCAGCTGCTGTTCTTGGTGGTGTTGACAACATCTGGATTAAACCTGGTGCTCGGGTTCTTTATCTTGGAGCTGCTTCAGGTACAACTGTATCTCACGTGTCTGATATTGTGGGCCCGACTGGTGTGGTTTATGCTGTGGAGTTTTCACACAGAAGTGGTAGAGACTTGGTAAACATGGCCAAGAAGCGAACTAATGTTATACCTATCATTGAAGATGCTAGACATCCTTCCAAATATAGAATGTTGGTTGGAATGGTGGATGTCATTTTTTCTGATGTTGCACAGCCTGATCAGGCAAGGATTTTAGCTCTCAACGCTTCGTATTTCCTCAAAGCTGGTGCCCACTTTGTTATTTCAATCAAGGCCAACTGCATAGACTCAACAGTCCCGGCAGAGGCAGTGTTTGCCAGCGAAGTGAACAAGCTCAAAGCCGATCAGTTCAAGCCATCCGAGCAAGTGACTCTCGAGCCATTTGAGCGGGACCACGCATGTGTTATGTCAATTGCAAAATTCAAGGTCTTTAACTCTCCAGATGTGATGAAAACAGAGGAGGGAAACGATTCCCTAGATACTATTATTAGGCAAGCAATTCCAAAAGAACCAGTTCTCTCTTTCTCAAGGCCTGGAGACAGTCCAGTCCAGTGGATTCAGTATCTTCATACTTTAGATCCACAAGAGCTCCCCGGTTGGCCCTTTTTTTCACCTGTGAAGATGCAGATGCAGAAGTGCGACAAATGTTCTAGAGAATTCTGCTCAACAATCAATTATAGAAGACACATACGAGCATATCACCGGTTGAAAAGGCTTGAAAAGGACTTTACAAAGAATCGGGAACTGTTGGCAGCATTCTGGGATAAGCTCTCCTCTGAAGAAGCAAAAGAGGTTTTATCATTCAAGAATGATCTATTTGAGGAAGTTCCTGGATCTGCTATTATCAAGAGTTTAACAGCATTGATTCGGAAACCAGGATTTTCTGGTTTACCTCTTACTTATTTGAAGACTGGTTCTGTCCTTTTGGACATTGTCCAAGGTAGACCTTCAAGGTTTCCAATATTCTCGCAGGAGTTATTTGGTATTCTTGATGATGCAAGCGAAAAGACTTTTCTATGTTGCACTGCTGCGTCAATGCAAAAATATATTTTTGATGGAGAGGCTGCAAAGATTTGTCTGGAAACAAAGAATCTGGTTGCTTGCATGTGCTTCTTGGTCGAGCAGAAATTGGTCAAGGCATGGCTTGCAGATAAAGATGCTGAAGCTTTAAGATGCCAGAAGTTGCTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGCAAGAAGGACCTGGCTGTTACTGTAGAAATAAGAGCTGTGAATGCTAGGTTTATACTTAATCCATTGTTCATTGCTGATAATTTCCCTGATTCTTCTAGACAAGCTGAGCTCTTAGAAAGAAAGAGGCAGAAAAAGCGTAGGCAAAAAGAGCAGAAAGCCAAAGAACAAGGATTGGAGGAATATGTGGATGACGAGGTTATTGACCAAATGTCAGACATCGTGCCATCTGTCGACTTATCCAATCCTACAGTGGATTGTAACATGGAAACCCAAGATCCAGAGATTCTCCCTGATCACATTCCACCATCTTTTGAGGCATGTCAACCCTCGAACACTCCAGAAAATAAAGATTCTGAGTCTCATATGGAGTTTAGTAGTTACCCAGAGCTCAACACAGATCTGAACAATGAACAAAGGAAGACACAGAAAAGTGGTCATAAGCAACTTAATTCCAGATGGCACTTATCGCCAAAATCACAACGGCACATGTCTAACGGTTTTCATTCTGATCAAAATTCTCAAGCATCAAGAATTTTGGTGACGCAAAACCATGGAAGCTCTAGGCAGTTAAAATCTGCATCATTGGTTAATGGAAATAAAGTGTGGAGTCGGAAGCCTAAGCTGGAAAATAATGGTGATAGATGCAAAGTTACAGTACAGAAGGAAGAAGCAACCAACAGGGCAGAGCAGTTTAAGAGCCATGAGGTTTTGATTGGTTCTATATCTGTGACGCTTGGAAGTTGTAGCCATGAGGATGAAAAGTCGACCCTCCAGGAGAAGGCACTCAAATGCGATTCTACGATAAGTGGAACAAATAACGTGACAGTTAAGCTGTGGAGGCCAGTCAGCCGAAACAGTTGCCAAAGATCAGATCAAGTTCAAAATGTTGATGGAGAAAGCGAAGTGGACTTGATTGCACCCAAGGGCAATGACCGCATCTTGCTCGATGAAAACAACAAAGACATATGCGGAAACTCTTCTCCGGCAGAGAGAAGTATTCTGCCGGCTAATGGCTTGCCATTCTCGAGTGACACTGCAAAAGCTTTTCTTGCGCAGAGATGGAAGGAAGCAATGATGGCGGAACACGTTAAATTAGTTCTATCTCCCGTCGAAGAACCTCAAGACTGTGAATTCACATCTCTGCCGTTGAATTTAAACAAATCTAATGATCTTGCCCGTGAAGAGAAGCATTCGGTTGCCTCGAAAATTCTCGGGTCCCGTACAGCCGGAGTGACTAAACCCAAGTTCAGAGCAAAACCGGAGAAGAATATGAAGATAAAGTACATCCCCAAGCAGAGAAGCGATTGTAAGTAA 2985 44.15 GGGGGGFRGGRGDGGRGRGRGFGGGRSGDRGSSMRGRGDSRGRGRGGGRGRGGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPSKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGAHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVMSIAKFKVFNSPDVMKTEEGNDSLDTIIRQAIPKEPVLSFSRPGDSPVQWIQYLHTLDPQELPGWPFFSPVKMQMQKCDKCSREFCSTINYRRHIRAYHRLKRLEKDFTKNRELLAAFWDKLSSEEAKEVLSFKNDLFEEVPGSAIIKSLTALIRKPGFSGLPLTYLKTGSVLLDIVQGRPSRFPIFSQELFGILDDASEKTFLCCTAASMQKYIFDGEAAKICLETKNLVACMCFLVEQKLVKAWLADKDAEALRCQKLLVEEEEAAQKSKKDLAVTVEIRAVNARFILNPLFIADNFPDSSRQAELLERKRQKKRRQKEQKAKEQGLEEYVDDEVIDQMSDIVPSVDLSNPTVDCNMETQDPEILPDHIPPSFEACQPSNTPENKDSESHMEFSSYPELNTDLNNEQRKTQKSGHKQLNSRWHLSPKSQRHMSNGFHSDQNSQASRILVTQNHGSSRQLKSASLVNGNKVWSRKPKLENNGDRCKVTVQKEEATNRAEQFKSHEVLIGSISVTLGSCSHEDEKSTLQEKALKCDSTISGTNNVTVKLWRPVSRNSCQRSDQVQNVDGESEVDLIAPKGNDRILLDENNKDICGNSSPAERSILPANGLPFSSDTAKAFLAQRWKEAMMAEHVKLVLSPVEEPQDCEFTSLPLNLNKSNDLAREEKHSVASKILGSRTAGVTKPKFRAKPEKNMKIKYIPKQRSDCK 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1351318 1361793 + BLOR20989 Blo09g00074 64701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00074 994 ProSitePatterns Fibrillarin signature. 162 176 IPR020813 GO:0003723|GO:0006364|GO:0008168
Blo09g00074 994 MobiDBLite consensus disorder prediction 633 682 - -
Blo09g00074 994 Gene3D Vaccinia Virus protein VP39 115 291 IPR029063 -
Blo09g00074 994 MobiDBLite consensus disorder prediction 596 617 - -
Blo09g00074 994 ProSitePatterns Zinc finger C2H2 type domain signature. 364 385 IPR013087 -
Blo09g00074 994 Pfam Fibrillarin 64 290 IPR000692 GO:0003723|GO:0006364|GO:0008168
Blo09g00074 994 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 62 287 IPR029063 -
Blo09g00074 994 Gene3D Phosphorylase Kinase; domain 1 59 114 - -
Blo09g00074 994 MobiDBLite consensus disorder prediction 32 46 - -
Blo09g00074 994 PRINTS Fibrillarin signature 217 246 IPR000692 GO:0003723|GO:0006364|GO:0008168
Blo09g00074 994 PRINTS Fibrillarin signature 187 216 IPR000692 GO:0003723|GO:0006364|GO:0008168
Blo09g00074 994 PRINTS Fibrillarin signature 137 158 IPR000692 GO:0003723|GO:0006364|GO:0008168
Blo09g00074 994 PRINTS Fibrillarin signature 269 290 IPR000692 GO:0003723|GO:0006364|GO:0008168
Blo09g00074 994 PRINTS Fibrillarin signature 82 101 IPR000692 GO:0003723|GO:0006364|GO:0008168
Blo09g00074 994 PRINTS Fibrillarin signature 110 129 IPR000692 GO:0003723|GO:0006364|GO:0008168
Blo09g00074 994 PRINTS Fibrillarin signature 162 179 IPR000692 GO:0003723|GO:0006364|GO:0008168
Blo09g00074 994 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 590 991 - -
Blo09g00074 994 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 287 560 - -
Blo09g00074 994 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 78 291 IPR000692 GO:0003723|GO:0006364|GO:0008168
Blo09g00074 994 SMART Fibrillarin_2 64 292 IPR000692 GO:0003723|GO:0006364|GO:0008168
Blo09g00074 994 ProSiteProfiles Zinc finger C2H2 type domain profile. 362 390 IPR013087 -
Blo09g00074 994 Coils Coil 592 615 - -
Blo09g00074 994 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00074 - - - csv:101211090 691.804
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00395 Blo09g00074 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00396 Blo-Chr7:6875537 Blo09g00074 Blo-Chr9:1351318 0 transposed
Blo07g00395 Blo-Chr7:6862230 Blo09g00074 Blo-Chr9:1351318 9.28E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g735 . . Bda05g00085 . Bpe03g00144 . Bma10g01237 Bma14g02052 Cmo16g00115 Cmo18g01289 . . . . Sed07g1007 . Cpe14g00092 Bhi01g01269 Tan01g0216 Cmetu09g1022 . Hepe07g0136 Mch10g1473 . . . . . . . . . . . . Lsi05g01207 . . . Blo07g00395 Blo09g00074 . . . . . . . . . Cma16g00107 Cma18g01262 Car16g00096 Car18g01171 Cpe09g00075 . Bhi12g00810 . . . . . Lcy10g0884 Cla05g00901 Cam05g0985 Cec05g0991 Cco05g0989 Clacu05g0973 Cmu05g0930 Cre05g1015 . Csa03g01736 Chy06g00967 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002978 1 2 2 2 2 1 2 2 2 1 1 2 1 2 2 2 1 3 1 2 2 1 2 2 2 1 3 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12752 PF01269 Fibrillarin 1.30E-107 CL0063 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00074 Blo_Chr09 FPKM 5.523809 2.437485 18.695837 15.962376 4.214847 7.224417 3.639768 1.462959 2.423786 1.094422