Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00080 ATGGGTATCGTAAAAACAGTAGTAGGAGTTCTTATATTATTATCGTCGACTACAATAACATCAAATGCTGTCGATTGCTCGACTGTGATGATGCTTCTCTCGATGTGCTCGAATTTCATCACGTACGGGTCTCCGGACCCGTTGCCAGGAACGCCATGTTGTGATGCGATGACAAACTTGAATACTATATCGAGCACGCCTCCGGATGGGAGGAGATCGGTTTGTGCATGCATAATGGGACTCATAACTACTTATAACCCTAATGCCACTGCCATTGCTACTTTGCCAGGGTTTTGTGGAGTTTCCTTTGGCTTTGCTATTGATCCTAATACTGATTGTAGCTTGTAA 348 43.97 MGIVKTVVGVLILLSSTTITSNAVDCSTVMMLLSMCSNFITYGSPDPLPGTPCCDAMTNLNTISSTPPDGRRSVCACIMGLITTYNPNATAIATLPGFCGVSFGFAIDPNTDCSL 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1433723 1434070 + BLOR20995 Blo09g00080 64707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00080 115 CDD nsLTP1 24 114 - -
Blo09g00080 115 SMART aai_6 26 113 IPR016140 -
Blo09g00080 115 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 14-RELATED 5 114 - -
Blo09g00080 115 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Blo09g00080 115 PRINTS Plant phospholipid transfer protein signature 104 115 IPR000528 GO:0006869|GO:0008289
Blo09g00080 115 PRINTS Plant phospholipid transfer protein signature 25 41 IPR000528 GO:0006869|GO:0008289
Blo09g00080 115 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Blo09g00080 115 PANTHER - 5 114 IPR000528 GO:0006869|GO:0008289
Blo09g00080 115 Pfam Probable lipid transfer 21 102 IPR016140 -
Blo09g00080 115 Gene3D - 23 115 IPR036312 -
Blo09g00080 115 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 23 114 IPR036312 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00080 - - - tcc:18605514 162.925
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00080 Blo-Chr9:1433723 Blo14g00023 Blo-Chr14:167150 1.78E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g613 . . . . Bpe03g00136 . . Bma14g02061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo09g00080 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018080 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00080 Blo_Chr09 FPKM 4.797085 4.5912 4.417897 4.241414 8.021239 7.980737 7.22362 5.374452 5.885166 4.993314