Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00092 ATGTCTTTTTTCTGGAATCAGGACGCTTCCTACTCTACTTACACTGATTCACCCGCTACCCAATATGGCGGCGGCTCCTCTTCCTTTGGCGGTAGAACTTCTCCGCCCTCCAATGGCAGCCATTCGAAGTACCGGGGTGTAAGGAGACGGAGCGGGAAATGGGTTTCAGAGATACGGGAGCCGCGTAAAACTACGCGCATTTGGCTCGGGACGTACTCCACGCCGGAGATGGCGGCTGCAGCATATGACGTGGCGGCGCTGGCATTGAAAGGGCAGGAAGCTACGTTGAATTTTCCGAATTCTATTTATTCATATCCCGTTCCGGCTTCTAACTCGGCGAATGATATTCGAGCGGCGGCGGCGAGGGCGGCTGAGAATTTTGCGCCGTCGTCGGATTCCGGGAGTGTGGGTCAATTTGGAAATGATGAGGGGGTGGGTCCTGGATGGGTGGCTGGAGGGGATTACGTGGATATGGAGGCTCAATTGAATATGCCGAATTTTCTGGCAGATATGGCGGAGGGAATGATGGTTAGCCCTCCCAGGATGCAGTACTCCGATTACTCGTCGGCGAATTTCAATGGGGATGAGCTATGGCGATGA 600 54.17 MSFFWNQDASYSTYTDSPATQYGGGSSSFGGRTSPPSNGSHSKYRGVRRRSGKWVSEIREPRKTTRIWLGTYSTPEMAAAAYDVAALALKGQEATLNFPNSIYSYPVPASNSANDIRAAAARAAENFAPSSDSGSVGQFGNDEGVGPGWVAGGDYVDMEAQLNMPNFLADMAEGMMVSPPRMQYSDYSSANFNGDELWR 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1744422 1745021 + BLOR21007 Blo09g00092 64719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00092 199 Gene3D AP2/ERF domain 42 101 IPR036955 GO:0003700|GO:0006355
Blo09g00092 199 SMART rav1_2 43 105 IPR001471 GO:0003700|GO:0006355
Blo09g00092 199 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Blo09g00092 199 ProSiteProfiles AP2/ERF domain profile. 43 99 IPR001471 GO:0003700|GO:0006355
Blo09g00092 199 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Blo09g00092 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 36 198 - -
Blo09g00092 199 MobiDBLite consensus disorder prediction 22 52 - -
Blo09g00092 199 MobiDBLite consensus disorder prediction 22 41 - -
Blo09g00092 199 PRINTS Ethylene responsive element binding protein signature 81 101 IPR001471 GO:0003700|GO:0006355
Blo09g00092 199 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Blo09g00092 199 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677
Blo09g00092 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 36 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00092 Blo-Chr9:1744422 Blo12g00499 Blo-Chr12:22835745 2.84E-45 dispersed
Blo07g00430 Blo-Chr7:8484956 Blo09g00092 Blo-Chr9:1744422 1.76E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12754 PF00847 AP2 7.20E-13 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00092 - - csin:114273073 178.718