Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00106 ATGTTTGGATGGAAAAAGTTCATTGCAGTACTTCAATCTATTTTACATTCTGGGAAGCAACTTCAGGAGCTTCTCACTGAAGATTCAGATGGCGATGATAGTTTGAGAAAGAGTAAAGTTCGCTCCAAGCTATTGAAGAAGTTGATTTCAGCCGCTTCCTCACCCACTATAGTAGGCAATGCTGCCAAATTTTTGTCTACATTAAACAAAGACGCTGCAGATAAAGCAGATTTACCAAACTTGATTATCGCAAACAATGACCAATTTCCTGAGGTTTCCATGGCCAAGAAAGAGGTCCAGTCTGCAAAGGATAAACTGGATTGTCTTATCAGTTTGTATCGCAAGATTCTTCGAATGCAAAGTTTAGAATTCACAACTGTGTCTGGAACCACACATCTAATTGAGTTGCCTTTGGATGTAAAGGTACCTGCAAATTGGGTTAAGGTTAATAGTACCAAAAAAACCATAAGATATCATCCTTCTGAAGTATTGACTGCTTTAGACCAGTTATCTCTTGCAAATGAGAGGCACATGCTGACCTGTCGAGCTACTTGGGATGGCTTTTTAAGTGATTTTGGTAGATATTATACTGAGTTTCGAGTTGCTGTTGAAGCATTGGCTACTTTGGATTGTCTGCATTCACTTGCAATTCTTTCAAGAAATAAGGATTATGTTCGTCCAGAGTTTGTATGCAATGATGAACCTGTTCAGATATATATCCGTTCTGGGCGACATCCTGTGTTAGAAGCTGCATTACAAGACAATTTTGTTCCAAATGACACAAATTTGCATGCGGACAGAGAGCACTGCCAAATTGTCACTGGACCGAATATGGGTGGAAAGAGTTGCTACATTCGTCAAGTTGCCTTGATTGCTATAATGGCTCAGGTTGGTTCATTTGTGCCAGCAGCTTCTGCAAATTTACATGTACTAGATGGCATCTACACCAGAATGGGTTCTTCAGATAGTATTCAACAAGGCAGAAGCACCTTTCTAGAAGAATTGGGCGAAGCTTCACATATTCTACATAATTGTACGGCCAAGTCACTTGTTATCATCGATGAGCTTGGGAGAGGTACAAGTACACACGACGGAGTGGCAATTGCGTATGCAACTTTGCATTATCTCTTAAAGGAGAAAAAATGCTTGGTACTTTTTGTCACCCACTATCCAAATATTGCTGATATAAGAAATGAGTTCTTGGGATCTGTGGAGGCATATCATGTGTCTTATCTAACATCACGTAAGGATTCAAGAATGTTGGATGAATATGATTATGAGGATGTCACATACTTGTATAAGCTTGTCCAGGGTGTCTCAGATCGGAGCTTTGCGTTTAAGGTTGCCCAACTTGCACAGATACCTTTGTCTTGTATCGCTCGAGCTACAACTATGGGGGCATATTTAGAAGCAGGTGTAAACAAGAGAACAGCCAGAAAATTCAGTGAAAACAGATTGAAAACATCAATGGGTGATCAAAATGAAGAAGCCGATTGCCGGGAGAAAGATTCAAATAATCTGAGTCTTATTTATGAGAAATTCTTTTCAACCTTGAAAGATGGTTTAATGATGGATGATCTTGCTCAAAGCTTTGAGCTTTTTAAGCAGGCTAAAAGCATTGCAGTGAACTTCTTAACAGGGGGTCTAGTGCCAACTGTCAGAGAGGTGGCAGGGCAAGCAGACCATCGGTTTTGCATCCGACTCCTGTATGCCAATTTTCAAAAACAATTTAAAGGCAGGTTGTTCAAAGATGCAATGTGGGCTGCATCTAGAACCACAACAGTGAGGCAATTTGAGAGAGAGATAGCCAAGTTATTTTTGCTTGACCCGGCGGCCCACAGCTATCTACGAGAAATAGATGACAGACGTACTTGTACCTGTTACCGGTGGGAGTTGACCGGCATCTCGTGTGTCCATGCAATCTCGGGCATTCACATCACAAGGAGATCTCCTGAGGAATTTGTGCATGCGTACTATCATCGGGAAACATACAAGGTGATGTACTCCCACTTTCTCTGCCCCATCAATGGACCAATCGAGTGGCCTCCTGTGACGAATTTTGATCCAATTATCCCACTGCCATTTAAAAGGCTTCTAGGAAGGACACACAAACGTAGAATATGGGATGTGGACGAGGCCCCAAGCCAAATAGTGCTGATCACAAGACATTTGAACGTCACTTGTGGCCAGTGTGGGCGTCTGGGGCACAATTCCCGCACTTATGATGAGGAAGGCAAGTCAAGTGCAGGGGCCTATAGAGGGAGTGGCAGAGCTAGAGCCAAAGGAGGCAGAGCAAGGTCGGAGGGCACATTTATGGGGTTCAGAGTTCCCAAGACAGTCCCCGAGACAATTCCTGCCCTAGTCCCTCAGACAGTTTTCGACAGAGTTCCTAGGACGCAGGAGTCTGATGCACAAGGTCCACAAACACAAGCGTACACAAGTGTGGACCTTAACCTTCCGTGA 2463 43.08 MFGWKKFIAVLQSILHSGKQLQELLTEDSDGDDSLRKSKVRSKLLKKLISAASSPTIVGNAAKFLSTLNKDAADKADLPNLIIANNDQFPEVSMAKKEVQSAKDKLDCLISLYRKILRMQSLEFTTVSGTTHLIELPLDVKVPANWVKVNSTKKTIRYHPSEVLTALDQLSLANERHMLTCRATWDGFLSDFGRYYTEFRVAVEALATLDCLHSLAILSRNKDYVRPEFVCNDEPVQIYIRSGRHPVLEAALQDNFVPNDTNLHADREHCQIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPAASANLHVLDGIYTRMGSSDSIQQGRSTFLEELGEASHILHNCTAKSLVIIDELGRGTSTHDGVAIAYATLHYLLKEKKCLVLFVTHYPNIADIRNEFLGSVEAYHVSYLTSRKDSRMLDEYDYEDVTYLYKLVQGVSDRSFAFKVAQLAQIPLSCIARATTMGAYLEAGVNKRTARKFSENRLKTSMGDQNEEADCREKDSNNLSLIYEKFFSTLKDGLMMDDLAQSFELFKQAKSIAVNFLTGGLVPTVREVAGQADHRFCIRLLYANFQKQFKGRLFKDAMWAASRTTTVRQFEREIAKLFLLDPAAHSYLREIDDRRTCTCYRWELTGISCVHAISGIHITRRSPEEFVHAYYHRETYKVMYSHFLCPINGPIEWPPVTNFDPIIPLPFKRLLGRTHKRRIWDVDEAPSQIVLITRHLNVTCGQCGRLGHNSRTYDEEGKSSAGAYRGSGRARAKGGRARSEGTFMGFRVPKTVPETIPALVPQTVFDRVPRTQESDAQGPQTQAYTSVDLNLP 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1980361 1994738 - BLOR21021 Blo09g00106 64733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00106 820 MobiDBLite consensus disorder prediction 740 766 - -
Blo09g00106 820 Gene3D - 224 509 IPR027417 -
Blo09g00106 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 468 IPR027417 -
Blo09g00106 820 SMART 26again6 623 650 IPR006564 GO:0008270
Blo09g00106 820 CDD ABC_MSH3_euk 238 462 - -
Blo09g00106 820 ProSiteProfiles Zinc finger SWIM-type profile. 615 648 IPR007527 GO:0008270
Blo09g00106 820 SUPERFAMILY DNA repair protein MutS, domain III 54 221 IPR036187 -
Blo09g00106 820 Gene3D - 66 192 - -
Blo09g00106 820 ProSitePatterns DNA mismatch repair proteins mutS family signature. 349 365 IPR000432 GO:0005524|GO:0006298|GO:0030983
Blo09g00106 820 MobiDBLite consensus disorder prediction 797 820 - -
Blo09g00106 820 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 5 506 - -
Blo09g00106 820 Pfam MutS domain V 271 467 IPR000432 GO:0005524|GO:0006298|GO:0030983
Blo09g00106 820 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 5 506 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Blo09g00106 820 SMART mutATP5 268 467 IPR000432 GO:0005524|GO:0006298|GO:0030983
Blo09g00106 820 SMART DNAend 5 251 IPR007696 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00106 K08736 MSH3; DNA mismatch repair protein MSH3 - qsu:111999023 717.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01308 Blo-Chr4:28131793 Blo09g00106 Blo-Chr9:1980361 3.81E-80 dispersed
Blo07g00476 Blo-Chr7:10597064 Blo09g00106 Blo-Chr9:1980361 5.09E-17 dispersed
Blo09g00106 Blo-Chr9:1980361 Blo03g00739 Blo-Chr3:31096314 1.40E-102 dispersed
Blo11g00292 Blo-Chr11:2366552 Blo09g00106 Blo-Chr9:1980361 2.01E-17 dispersed
Blo17g00613 Blo-Chr17:12452732 Blo09g00106 Blo-Chr9:1980361 2.95E-17 dispersed
Blo18g00651 Blo-Chr18:11915574 Blo09g00106 Blo-Chr9:1980361 1.54E-62 dispersed
Blo02g00712 Blo-Chr2:22462209 Blo09g00106 Blo-Chr9:1980361 6.64E-15 transposed
Blo03g01538 Blo-Chr3:42663636 Blo09g00106 Blo-Chr9:1980361 5.32E-38 transposed
Blo05g00257 Blo-Chr5:2847497 Blo09g00106 Blo-Chr9:1980361 8.73E-44 transposed
Blo07g00899 Blo-Chr7:27868387 Blo09g00106 Blo-Chr9:1980361 3.09E-37 transposed
Blo08g00283 Blo-Chr8:3834087 Blo09g00106 Blo-Chr9:1980361 9.33E-37 transposed
Blo08g00404 Blo-Chr8:7559169 Blo09g00106 Blo-Chr9:1980361 5.90E-07 transposed
Blo13g00049 Blo-Chr13:741623 Blo09g00106 Blo-Chr9:1980361 7.34E-54 transposed
Blo14g00653 Blo-Chr14:13424671 Blo09g00106 Blo-Chr9:1980361 8.40E-36 transposed
Blo15g00365 Blo-Chr15:4847530 Blo09g00106 Blo-Chr9:1980361 3.63E-43 transposed
Blo16g00336 Blo-Chr16:9498245 Blo09g00106 Blo-Chr9:1980361 3.84E-37 transposed
Blo06g01118 Blo-Chr6:34619444 Blo09g00106 Blo-Chr9:1980361 7.81E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00106 Blo_Chr09 FPKM 0.851485 1.690718 1.041733 1.221037 3.665267 3.135074 3.996793 0.0 0.0 0.180364