Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00120 ATGGGAAGAGGGAGAGTGGTGTTGGAGAGGATAGAAAACAAAATCAATCGGCAGGTTACCTTCTCAAAGAGAAGAAATGGGTTGCTGAAGAAAGCTTACGAGCTTTCTGTACTTTGTGATGCTGAAGTTGCCGTAATCATCTTCTCCAGCCGTGGTAAACTCTTTGAATTTGGCAGCGCTGACATGAACGCAATCCTTGAGAGGTACAGACATTATTGTTATACTCTACGAGGAACCAATGTTACTGACGATGACACACAGGCAATGTGTCAAGAGGTCTCAAGATTAAAAGTAAAATATGAATCACTTCAATTTTTACAAAGGCAATATCTGGGAGAAGATCTTGCGTCACTAAATCTAAAAGAGTTGCAAGATATAGAGAAAGAGCTTGACAAAACTCTAGCACTAGCCAGGCAGAGAAAGGTATCATTCTACTATTTATTGATAGAAGCAAAAGGATAA 462 39.61 MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSSRGKLFEFGSADMNAILERYRHYCYTLRGTNVTDDDTQAMCQEVSRLKVKYESLQFLQRQYLGEDLASLNLKELQDIEKELDKTLALARQRKVSFYYLLIEAKG 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2848890 2850813 - BLOR21035 Blo09g00120 64747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00120 153 Gene3D - 13 74 IPR036879 GO:0003677|GO:0046983
Blo09g00120 153 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo09g00120 153 Pfam K-box region 83 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo09g00120 153 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 144 - -
Blo09g00120 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo09g00120 153 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Blo09g00120 153 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 144 - -
Blo09g00120 153 Coils Coil 120 140 - -
Blo09g00120 153 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo09g00120 153 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo09g00120 153 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo09g00120 153 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Blo09g00120 153 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo09g00120 153 ProSiteProfiles K-box domain profile. 86 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo09g00120 153 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00120 Blo-Chr9:2848890 Blo11g00805 Blo-Chr11:12765549 1.07E-46 dispersed
Blo01g00342 Blo-Chr1:4055882 Blo09g00120 Blo-Chr9:2848890 6.08E-20 transposed
Blo04g01381 Blo-Chr4:32921379 Blo09g00120 Blo-Chr9:2848890 2.98E-16 transposed
Blo15g00152 Blo-Chr15:1517856 Blo09g00120 Blo-Chr9:2848890 2.93E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12756 PF01486 K-box 6.40E-17 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00120 K09264 - qsu:112034717 205.297