Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00173 ATGATGAGACTTCGGACATATTCAGGCCTTAGTTTTATTGCAGCTCTAGTAGTTGTTTACCATGCTTTTAGCAGCAGAGGTCAGTTTTACCCAGCTATGGTTTACCTATCAACCTCCAAGATCAATTTGGTGCTTCTTCTCAACATGGGACTAGTTGTGATGTGCTTGTTATGGAAACTCACAAAAAAGTTATTTCTTGGCTCTCTTCGCGAAGCGGAGATAGAGAGGCTTAATGAGCAGTCATGGAGGGAGCTGATGGAAATCCTTTTTGCAATCACTATTTTCCGGCAAGAGTTTTCTGTTACATTCCTTGCTATGGTCACAGCGCTGTTGTTAATTAAAGCTTTGCATTGGCTGGCTCAGAAAAGGGTTGAGTACATTGAGACCACTCCATCTGTACCCATGTTATCTCACATTCGGATTGTTTCTTTCTTGGGGTTCCTTCTTGTTCTAGATAGCCTTTTTCTCTATATTTCCCTGCTGACCATGATACCGTGGCAGGCTTCAGTATACGTCTTCTTTGCATTCGAGTACATGATTCTGGCAACAACTACTGTGTCTACGTTTGTGAAATATGTTTTCTATGTCAGGGACATGCTTATGGAGGGACAATGGGAAAGGAAGCTTGTATACACATTTTACTTGGAACTTATTCGGGACTTGCTTCACTTGTCTATGTATCTATGCTTCTTCGCGGTGATTTTTGCGTTTTATGGTGTTCCTTTACATTTAATTCGAGAGCTCTACGAGACATTCAGGAATTTTAAGATCCGCATTGCAGATTATGTACGATACCGTAAGATCACTTCAAACATGAATGATCGCTTTCCAGATGCAACAACAGAAGAGCTTAATGAAAGCGATGCCACATGCATTATTTGTCGTGAAGAGATGACAATGGCAAAGAAACTAATTTGTGGACATCTCTTTCATGTCCATTGTCTTCGCTCCTGGTTGGAGCGACAGCATACTTGTCCTACATGCAGAGCACTAGTTGTACCACCTGAAGGAACAAATGTAGTTGCAGATCAACGGGGATCGCAGTCAGATGCTAATCAACAGGCAGGTATAGGAATTTCAAGTGCAACTGAACAGGGTTCCTCTAGTGGTGGTATGGCAGGGGATGACGTAAGCCAACATCAAGCCAGACTCCAAGCTGCGGCCAATGCGGCCTTAATATATGAAAGATCCTACGTTTATCCTTCTCCAAGCACGCTCGTTTGGTCCCCTGGATATGCTGCAGTTCCTCAAATTCAAAGACCATTGCCGGAGTCTTCTAATTCTGAATTAGGTAGCGCTCTTGGTTGGACAGGACAATCACAACATTTTGCAAGTCCTGGTGGCCCTGCATCTTCCTTTCCCCAACTTCCGCGCTCATTTTTTGTTCCTTATCAGCCTTCTGGAGCCACTGTAAATTCTGGAGTAGTGTTGTGTGATGATCCAATGGTAGCGCGATCACAGATTGAAGCTCAAAGAAGATTTCTTGAGCACCAAATTGAGGTGCATGATCCTATAGCACCTCATAATCCGATGCTAACACTAAATCAAAAAATGTCTCTTTTCCATTCAGCTCCATGTTGGCTCACAGATGAGCTCCGTAATTTTGTGTTGCCTCTCCTGGTTGGATGTATAAGGAGAGATTATTATATCGTGCTGGTGATAGGAAGTGGGAGGATCCCCAAGAAACTTGAGTTGGACCCAACTTTGACATATGCATACATGTATTGGGCTGCATCTTTAAGGAGAAAAGAGGATGTCCAAGCAGCACTTGCTGAAATCAACAAAATTCTTGGCTTTAAACTTGCATTGGAATGCTTGGAGCTTTGGTTTTGTTCGTATCTTTCTCTTGAGGACTACAAAGCTGCCATATGTGATTTTCAAACAATTCTCATGCTATCTCTTGCTTATTGA 1911 42.65 MMRLRTYSGLSFIAALVVVYHAFSSRGQFYPAMVYLSTSKINLVLLLNMGLVVMCLLWKLTKKLFLGSLREAEIERLNEQSWRELMEILFAITIFRQEFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHIRIVSFLGFLLVLDSLFLYISLLTMIPWQASVYVFFAFEYMILATTTVSTFVKYVFYVRDMLMEGQWERKLVYTFYLELIRDLLHLSMYLCFFAVIFAFYGVPLHLIRELYETFRNFKIRIADYVRYRKITSNMNDRFPDATTEELNESDATCIICREEMTMAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPEGTNVVADQRGSQSDANQQAGIGISSATEQGSSSGGMAGDDVSQHQARLQAAANAALIYERSYVYPSPSTLVWSPGYAAVPQIQRPLPESSNSELGSALGWTGQSQHFASPGGPASSFPQLPRSFFVPYQPSGATVNSGVVLCDDPMVARSQIEAQRRFLEHQIEVHDPIAPHNPMLTLNQKMSLFHSAPCWLTDELRNFVLPLLVGCIRRDYYIVLVIGSGRIPKKLELDPTLTYAYMYWAASLRRKEDVQAALAEINKILGFKLALECLELWFCSYLSLEDYKAAICDFQTILMLSLAY 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6018777 6031142 + BLOR21088 Blo09g00173 64800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00173 636 CDD RING-H2_synoviolin 288 329 - -
Blo09g00173 636 PANTHER - 1 464 - -
Blo09g00173 636 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Blo09g00173 636 Pfam Ring finger domain 290 329 IPR001841 -
Blo09g00173 636 MobiDBLite consensus disorder prediction 361 375 - -
Blo09g00173 636 MobiDBLite consensus disorder prediction 361 380 - -
Blo09g00173 636 PANTHER RING ZINC FINGER PROTEIN 1 464 - -
Blo09g00173 636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 335 IPR013083 -
Blo09g00173 636 SUPERFAMILY RING/U-box 271 336 - -
Blo09g00173 636 SMART ring_2 291 328 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00173 Blo-Chr9:6018777 Blo10g00013 Blo-Chr10:155253 1.26E-28 dispersed
Blo09g00173 Blo-Chr9:6018777 Blo13g01032 Blo-Chr13:32693202 4.47E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00173 K10601 - qsu:112000395 708.368