Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00319 ATGGATCCGCGTTGTAAGGGGTACTCCTATTCCATCAAAGACATTCAATTCAGCAACCAAGCTTTATTAGTTCATCCCAATCCGAATGCTGTAGTCGGGCCCAGATCTGAAAACGCCCTTTTAGATCATAGATTTGAGGAATTTCATTATGTTCCACCTGATCCCCCGCCTAGCAATATGGTATCTAGTTCGAGTAATATCACCTCATGTTCAAGTGCGAGCCACGGCGAAAATTCACCCGAAGATTGCGATTTTTCCGACGCAATTTTGGGGTACATCAGCCAGATTCTCATGGAAGAAGATATGGAGGAGAAAACTTGTATGCTTCAAGACTCTTTGGATTTTCAAGCCGCTGAGAAATCATTTTATGATGTTCTTGGCGAAAAGTATCCTCCTCTTCACGATCAGAACAGGCCTTACAGTAGTCAATATAATGAAATTTTAGATGATAATTCATTTGGAGATTATTATAATTATCTCACTAATATTTATGGAGAAAATGCTTATTTTGAGAATGATACTCATAATCAATTCCTTGTTGAAGATTTCTCACACATAGATAGCCTACCTTCTTGTGTTATTGATCAGTCAGTATATAGCTCGTCAAATAGTGTCATTAGTAGCATCGACAAGCTTGTGGACTCTTCGAACAGTTCTTTTTCGGTTCCTGAATTTAGTAATGGAAGCCAATCAATATGGCAGTTCAGGAAAGGGGTTGAAGAGGCGAAGAAATTTCTACCAAATGAAAATGGTTTATTTCTCAATCAAGGGCCAGAGGCTGGTGAGGTGGTCGTCAAGGTGGAGACTAGGGAAGGAAATGAGTTGTTGCCGTGTGAATCGAGGGGAAGAAAGAATTCTCTCAAGGAAGATGGAGATTTGGAAGAGAAGAGAAATAATAAACTAGCGGCTATTTTCGCCGACTCGACCTCACGAACTGAGATGTTTGACAATGTCTTACTTTGTAGTGAAGGCGAAGGGATGCGCAAATTGGCAGCCCTTCGCAATTCTTTACAGATGGCGAAACGGAGAAGTTTGGAGCAGAACGGACAATCAAAGGGATATAATGGAGGGAGGGGCCGGGGAAAGAAACAGAACGGGAAGAAGGAGGTGGTGGATTTGAGACTTTTGTTAATTAACTGTGCACAGGCTGTTGCTGCTGATGATCATAGGAATGCAAATGAATTGCTTAGGCAAATTAAGCAGCATTCGTCTCCTTTTGGAGACGGAAACCAAAGGTTAGCCCACTGCTTTGCGGAAGGGCTCGAGGCCCGGTTGGCTGGCATAGGAAGCCAGATATATAAAGGTCTTGTCAATAAGAGGACATCTGCTGCAGATCAGTTGAAAGCTTACCATTTATACCTGGCAGCCTGTCCGTTTCGGAAAATATCGAATTTTACATCCAATAGGACGATAAGGAGTATTGCAGCAAATTCAACTAGACTTCATGTCATAGACTTCGGCATTCTTTATGGATTTCAATGGCCAACCCTCATTCAGAGACTCTCATGGAGAAAAGGCGGTCCTCCGAAGCTTCGAATCACCGGAATCGAGTTTCCCCAGCCAGGCTTTCGACCAGCTGAGCGAGTGGAGGAAACGGGCCGTCGTTTGTCGAATTATGCGGAAAATTTCAAGGTGCCGTTCGAGTACAATCCCGTAGCGAAAAACTGGGAGACTGTTACCATTGATGATCTCAAGATAGAAGGTGACGAAGTATTGGTTGTTAACTGTTTGTACCGAGCGAAGAACTTGCGCGATGAGAGTGTGGCAGTGGAAAGTGCCCGAAATAAGTTTCTTCAAATTGTACGCAAAATAAATCCGAACATCTTCATCTATGGTGCTGTCAATGGATCGTATAATGCCCCCTTCTTCGTTACTCGTTTTCGAGAGGCACTCTTCCACTATTCTGCCATGTTTGACATGCTTGAAACTGTTGTCCCACGGGAGGATGGAGAGAGAATGTTGATCGAGAGAGAAATCTTTGGCCGAGAAGCTTTGAATGTTATTGCATGCGAAGGCTGGGAGAGAGTTGAAAGACCAGAGACCTATAAGCAGTGGCAGGTTCGAATCATGATGGCCGGATTCTTGCAGCTTGAAGTAGACAGAGAGATAATGAAGACTGCAAAGGAGAAAGTAAGGGAAAGTTACCACAAGGATTTTGTAATCGACGAAGATAGCAAATGGATGCTACAGGGATGGAAGGGAAGAACTATATATGCCCTCTCTGCATGGAAACCTGTTTAG 2241 43.42 MDPRCKGYSYSIKDIQFSNQALLVHPNPNAVVGPRSENALLDHRFEEFHYVPPDPPPSNMVSSSSNITSCSSASHGENSPEDCDFSDAILGYISQILMEEDMEEKTCMLQDSLDFQAAEKSFYDVLGEKYPPLHDQNRPYSSQYNEILDDNSFGDYYNYLTNIYGENAYFENDTHNQFLVEDFSHIDSLPSCVIDQSVYSSSNSVISSIDKLVDSSNSSFSVPEFSNGSQSIWQFRKGVEEAKKFLPNENGLFLNQGPEAGEVVVKVETREGNELLPCESRGRKNSLKEDGDLEEKRNNKLAAIFADSTSRTEMFDNVLLCSEGEGMRKLAALRNSLQMAKRRSLEQNGQSKGYNGGRGRGKKQNGKKEVVDLRLLLINCAQAVAADDHRNANELLRQIKQHSSPFGDGNQRLAHCFAEGLEARLAGIGSQIYKGLVNKRTSAADQLKAYHLYLAACPFRKISNFTSNRTIRSIAANSTRLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGFRPAERVEETGRRLSNYAENFKVPFEYNPVAKNWETVTIDDLKIEGDEVLVVNCLYRAKNLRDESVAVESARNKFLQIVRKINPNIFIYGAVNGSYNAPFFVTRFREALFHYSAMFDMLETVVPREDGERMLIEREIFGREALNVIACEGWERVERPETYKQWQVRIMMAGFLQLEVDREIMKTAKEKVRESYHKDFVIDEDSKWMLQGWKGRTIYALSAWKPV 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13372989 13375229 - BLOR21234 Blo09g00319 64946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00319 746 MobiDBLite consensus disorder prediction 340 365 - -
Blo09g00319 746 MobiDBLite consensus disorder prediction 340 354 - -
Blo09g00319 746 MobiDBLite consensus disorder prediction 52 80 - -
Blo09g00319 746 PANTHER SCARECROW-LIKE PROTEIN 9 40 745 - -
Blo09g00319 746 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 745 IPR005202 -
Blo09g00319 746 Pfam GRAS domain family 374 744 IPR005202 -
Blo09g00319 746 ProSiteProfiles GRAS family profile. 364 744 IPR005202 -
Blo09g00319 746 MobiDBLite consensus disorder prediction 60 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00319 - - - cit:102622070 933.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00319 Blo-Chr9:13372989 Blo13g01071 Blo-Chr13:32894745 0 dispersed
Blo17g00226 Blo-Chr17:2326381 Blo09g00319 Blo-Chr9:13372989 3.09E-60 dispersed
Blo09g00319 Blo-Chr9:13372989 Blo04g00113 Blo-Chr4:951849 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g744 . . . . Bpe04g01322 . Bma04g01386 . Cmo06g00292 Cmo14g00135 . . . . . . Cpe08g01167 . . . . . . . . . . . . . . . Cone10ag0315 . Cone19ag1332 . . . Cme04g02627 . Blo09g00319 Bda03g01464 . . . . . Sed04g1261 . . Cma06g00294 Cma14g00142 Car06g00255 Car14g00115 Cpe03g00113 . Bhi11g02267 Tan08g2009 Cmetu08g0553 Lac10g3111 . . . Cla10g02012 Cam10g2080 Cec10g2124 Cco10g2105 Clacu10g2088 Cmu10g2833 Cre10g2227 Lsi03g02114 Csa03g03178 Chy04g02153 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo09g00319 . 45 745 GRAS Transcription Factor Family AT2G37650 51.9 1.4e-198 689.9
Blo09g00319 . 289 746 GRAS Transcription Factor Family AT3G46600 50.7 8.3e-125 444.5
Blo16g00358 . 36 452 GRAS Transcription Factor Family AT3G49950 61.7 5.2e-140 494.6
Blo04g00926 . 117 569 GRAS Transcription Factor Family AT4G36710 54.2 5.2e-131 464.9
Blo07g00834 . 55 453 GRAS Transcription Factor Family AT5G41920 65.3 7.9e-141 497.3
Blo10g00907 . 1 169 GRAS Transcription Factor Family AT5G41920 58.2 5.3e-44 175.6
Blo05g00794 . 1 612 GRAS Transcription Factor Family AT5G66770 58.4 1.9e-183 639.4
Blo10g00862 . 18 508 GRAS Transcription Factor Family AT1G50600 58.2 4.6e-165 578.2
Blo02g00135 BCT 92 513 GRAS Transcription Factor Family AT1G50600 63.7 7.8e-157 550.8
Blo15g00454 BCT 88 510 GRAS Transcription Factor Family AT1G50600 60.5 4.7e-146 515.0
Blo13g01002 . 108 546 GRAS Transcription Factor Family AT1G50600 57.3 1.3e-140 496.9
Blo14g00035 . 103 542 GRAS Transcription Factor Family AT1G50600 56.7 6.2e-138 488.0
Blo03g00589 . 201 572 GRAS Transcription Factor Family AT1G50600 62.6 1.4e-134 476.9
Blo01g01323 CCT,ECH 210 579 GRAS Transcription Factor Family AT1G50600 50.8 2.2e-103 373.2
Blo17g00226 CCT,ECH 1 338 GRAS Transcription Factor Family AT1G50600 53.8 3.2e-102 369.4
Blo16g00714 . 33 572 GRAS Transcription Factor Family AT1G14920 65.7 2.9e-199 691.8
Blo01g00753 . 17 559 GRAS Transcription Factor Family AT1G14920 65.0 1.1e-193 673.3
Blo17g00458 . 47 580 GRAS Transcription Factor Family AT1G14920 62.4 3.2e-190 661.8
Blo18g00464 . 46 585 GRAS Transcription Factor Family AT1G14920 60.4 2.7e-181 632.1
Blo10g00896 . 42 437 GRAS Transcription Factor Family AT1G55580 53.6 1.2e-105 380.6
Blo17g00458 . 42 577 GRAS Transcription Factor Family AT1G66350 63.9 1.2e-186 649.8
Blo18g00464 . 41 586 GRAS Transcription Factor Family AT1G66350 61.2 1.1e-179 626.7
Blo16g00714 . 19 573 GRAS Transcription Factor Family AT1G66350 55.9 2.1e-167 585.9
Blo01g00753 . 3 560 GRAS Transcription Factor Family AT1G66350 55.0 3.0e-161 565.5
Blo13g01071 . 237 786 GRAS Transcription Factor Family AT1G07520 51.6 1.0e-151 533.9
Blo02g00135 BCT 5 513 GRAS Transcription Factor Family AT5G48150 62.1 1.7e-177 619.4
Blo15g00454 BCT 5 510 GRAS Transcription Factor Family AT5G48150 61.1 2.1e-172 602.4
Blo10g00862 . 33 508 GRAS Transcription Factor Family AT5G48150 60.6 4.3e-165 578.2
Blo13g01002 . 57 546 GRAS Transcription Factor Family AT5G48150 56.7 3.5e-151 531.9
Blo14g00035 . 12 542 GRAS Transcription Factor Family AT5G48150 52.7 1.6e-143 506.5
Blo03g00589 . 79 572 GRAS Transcription Factor Family AT5G48150 53.9 4.7e-140 495.0
Blo01g01323 CCT,ECH 188 579 GRAS Transcription Factor Family AT5G48150 52.5 4.5e-114 408.7
Blo17g00226 CCT,ECH 1 338 GRAS Transcription Factor Family AT5G48150 57.2 1.9e-109 393.3
Blo16g00714 . 35 577 GRAS Transcription Factor Family AT2G01570 66.3 5.0e-205 711.1
Blo01g00753 . 19 559 GRAS Transcription Factor Family AT2G01570 65.5 8.6e-197 683.7
Blo17g00458 . 49 579 GRAS Transcription Factor Family AT2G01570 63.1 1.4e-191 666.4
Blo18g00464 . 48 583 GRAS Transcription Factor Family AT2G01570 60.0 3.3e-180 628.6
Blo17g00458 . 42 577 GRAS Transcription Factor Family AT1G66350 63.9 1.2e-186 649.8
Blo18g00464 . 41 586 GRAS Transcription Factor Family AT1G66350 61.2 1.1e-179 626.7
Blo16g00714 . 19 573 GRAS Transcription Factor Family AT1G66350 55.9 2.1e-167 585.9
Blo01g00753 . 3 560 GRAS Transcription Factor Family AT1G66350 55.0 3.0e-161 565.5
Blo17g00458 . 49 578 GRAS Transcription Factor Family AT3G03450 63.3 2.4e-185 645.6
Blo18g00464 . 48 583 GRAS Transcription Factor Family AT3G03450 61.7 8.6e-183 637.1
Blo16g00714 . 35 572 GRAS Transcription Factor Family AT3G03450 59.1 4.2e-169 591.7
Blo01g00753 . 19 559 GRAS Transcription Factor Family AT3G03450 57.8 5.3e-164 574.7
Blo17g00458 . 48 578 GRAS Transcription Factor Family AT5G17490 60.0 1.5e-163 573.2
Blo18g00464 . 47 584 GRAS Transcription Factor Family AT5G17490 58.0 5.2e-161 564.7
Blo16g00714 . 31 570 GRAS Transcription Factor Family AT5G17490 53.0 6.6e-148 521.2
Blo01g00753 . 15 559 GRAS Transcription Factor Family AT5G17490 52.3 1.7e-143 506.5
Blo01g01323 CCT,ECH 1 579 GRAS Transcription Factor Family AT1G21450 59.5 1.9e-180 629.4
Blo17g00226 CCT,ECH 1 334 GRAS Transcription Factor Family AT1G21450 73.1 6.1e-142 501.5
Blo02g00135 BCT 138 513 GRAS Transcription Factor Family AT1G21450 51.7 3.5e-113 406.0
Blo15g00454 BCT 136 510 GRAS Transcription Factor Family AT1G21450 51.2 1.4e-109 394.0
Blo03g00589 . 204 572 GRAS Transcription Factor Family AT1G21450 52.4 9.9e-108 387.9
Blo09g00319 . 350 746 GRAS Transcription Factor Family AT5G59450 53.3 3.5e-124 442.6
Blo14g00035 . 1 542 GRAS Transcription Factor Family AT4G17230 60.8 2.3e-177 619.0
Blo13g01002 . 1 546 GRAS Transcription Factor Family AT4G17230 56.8 3.8e-167 585.1
Blo02g00135 BCT 16 513 GRAS Transcription Factor Family AT4G17230 50.3 8.5e-135 477.6
Blo15g00454 BCT 16 510 GRAS Transcription Factor Family AT4G17230 50.5 6.5e-127 451.4
Blo15g00454 BCT 132 510 GRAS Transcription Factor Family AT2G04890 69.4 2.7e-152 535.4
Blo02g00135 BCT 126 513 GRAS Transcription Factor Family AT2G04890 64.9 2.8e-149 525.4
Blo10g00862 . 98 508 GRAS Transcription Factor Family AT2G04890 60.6 2.9e-146 515.4
Blo13g01002 . 166 546 GRAS Transcription Factor Family AT2G04890 61.4 1.2e-128 456.8
Blo03g00589 . 195 572 GRAS Transcription Factor Family AT2G04890 59.0 7.8e-128 454.1
Blo14g00035 . 153 542 GRAS Transcription Factor Family AT2G04890 58.1 8.1e-125 444.1
Blo01g01323 CCT,ECH 210 579 GRAS Transcription Factor Family AT2G04890 50.5 5.1e-103 371.7
Blo17g00226 CCT,ECH 1 338 GRAS Transcription Factor Family AT2G04890 52.9 5.3e-100 361.7
Blo03g00972 . 817 1275 GRAS Transcription Factor Family AT1G50420 65.9 2.8e-169 592.0
Blo04g00411 . 1 464 GRAS Transcription Factor Family AT1G50420 59.0 8.8e-155 543.9
Blo07g00834 . 86 451 GRAS Transcription Factor Family AT3G54220 62.0 5.0e-129 458.8
Blo05g00280 . 147 518 GRAS Transcription Factor Family AT3G54220 51.8 1.2e-106 384.4
Blo10g00907 . 3 165 GRAS Transcription Factor Family AT3G54220 57.6 1.4e-46 184.9
Blo06g00014 . 90 481 GRAS Transcription Factor Family AT4G37650 67.2 9.6e-155 543.9
Blo05g00836 . 1 482 GRAS Transcription Factor Family AT4G37650 54.8 2.6e-152 535.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003169 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 2 1 1 1 1 1 4 1 4 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12767 PF03514 GRAS 1.50E-122 CL0063 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00319 Blo_Chr09 FPKM 10.633499 12.792459 29.075432 27.131145 42.358276 35.524204 42.922199 40.022366 36.975288 41.68713