Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo09g00346 ATGGAGTTGTTACAGTCATTGGACGTTCAGACTCTTCTGGGTTTAGCTCTAGCTCTTCTCGCCATTGGAGCTGGAGCTCTCTATTTCCTTTCCTTTTCCAAGAAATCAACATCTAGAGGCTGCTTAGATCCTGAGAGATTCAAGGAGTTTAAACTTATCAAGCGCGCAAAGCTGAGCCATAATGTGGCAAAATTTACATTTGCTCTTCCAAAACCAACATCGGTTTTGGGTCTTCCCATTGGACAACACTTAAGTTGCAGAGGCAAGGACAGTCAAGGAGAAGAGGTTATTAAACCATATACTCCTACCACTTTGGACTCTGATGTAGGATATTTTGAACTGGTCATAAAAATGTATCCTCAAGGAAGAATGTCACACCATTTTAGAGAGATGCGAGTCGGGGATTATCTTTCTGTCAAGGGACCAAAGGGACGATTCAAGTATCGACCTGGTCAAGTTAGAGCATTTGGAATGCTTGCTGGTGGCTCTGGCATTACACCGATGTTCCAAGTTGCTCGTGCAATACTAGAGAACCCGGCCGACAAAACGAAGGTACACCTCATATATGCCAATGTTACATATGAAGATATTCTTTTGAAGGAAGAGATTGATTTGCTTGCCTCTAGATATCCAGATCGCTTCACGTTGTACTATGTCTTGAATCAGCCTCCCGAGAGTTGGGACGGAGGTGTCGGTTTCGTATCCAAGGAAATGATTCAAACCCACTGCCCTGCACCCGGACCTGATATTCAGACTGCAGACCAGTTGGTGACCTTGAATGTGTGTGGAGAAATAAGTTTCTTTTTTTTTTTCTCTCTCTCTGAAACGTTGATCGGGAGCACACCTATGATATACCTCAACAAAGTTACTGATGGCTGCGTGGCAAATGTTGCAGCAAAACTTGAATCGATGGAACCTTGCCGGAGTGTCAAGGATCGGATTGGTTATAGTATGATAGCTGATGCTGAGGAGAGTGGAGCAATATCCCCTGGAAAAACCATATTAGTCGAACCAACCACTGGAAATACAGGACTTGGTATTGCTTTCATTGCAGCAACTAAAGGTTACAAACTAATAGTAACCATGCCAGCATCCATCAATGTTGAAAGGAGGATCCTATTGCGAGCATTTGGTGCAGATATAATTTTGACTGATCCCGAGAAAGGTTTACAAGGGGCTATTGATAAAGCTGAAGAGATTGTTCATAACACTTCGAATGCTTACATGTTTCAACAGTTTGACAATGTTGCTAATACAAAGATCCACTTTGAAACAACGGGACCAGAGATATGGGAGGATACCATGGGCAATGTTGACATATTTGTTGCTGGGATTGGCACTGGTGGTACAATTACAGGCACTGGGCGATACTTGAACATGATGAACAAAGAAATTAAGATAGTGGGTGTTGAACCTGCAGAGAAAAGTGTAGTCTCAGGAGGAAGTCCAGGTTATGTGCCAAGCATTATGGATGTTAAATTGCTTGATGAGGTGATGAAGGTTACTAATGAAGAAGCTGTTGAAGTGGCCAGGAGATTAGCATTGGAGGAAGGATTACTGGTGGGTATTTCGTCAGGAGCTGCAGCCGCTGCTGCCATTAGTTTAGCAAGAAGACCTGAGAATGCTGGAAAACTTATTGTGGTAGTTGCGCAATCATTACATTGTCGTTTGATGGGTGGGGGTGATAGGCTGCCATGCTAA 1701 43.33 MELLQSLDVQTLLGLALALLAIGAGALYFLSFSKKSTSRGCLDPERFKEFKLIKRAKLSHNVAKFTFALPKPTSVLGLPIGQHLSCRGKDSQGEEVIKPYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRVGDYLSVKGPKGRFKYRPGQVRAFGMLAGGSGITPMFQVARAILENPADKTKVHLIYANVTYEDILLKEEIDLLASRYPDRFTLYYVLNQPPESWDGGVGFVSKEMIQTHCPAPGPDIQTADQLVTLNVCGEISFFFFFSLSETLIGSTPMIYLNKVTDGCVANVAAKLESMEPCRSVKDRIGYSMIADAEESGAISPGKTILVEPTTGNTGLGIAFIAATKGYKLIVTMPASINVERRILLRAFGADIILTDPEKGLQGAIDKAEEIVHNTSNAYMFQQFDNVANTKIHFETTGPEIWEDTMGNVDIFVAGIGTGGTITGTGRYLNMMNKEIKIVGVEPAEKSVVSGGSPGYVPSIMDVKLLDEVMKVTNEEAVEVARRLALEEGLLVGISSGAAAAAAISLARRPENAGKLIVVVAQSLHCRLMGGGDRLPC 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13906357 13923469 - BLOR21261 Blo09g00346 64973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo09g00346 566 CDD CBS_like 279 549 - -
Blo09g00346 566 CDD cyt_b5_reduct_like 50 263 - -
Blo09g00346 566 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Blo09g00346 566 Gene3D - 277 552 IPR036052 -
Blo09g00346 566 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Blo09g00346 566 TIGRFAM cysK: cysteine synthase A 275 556 IPR005859 GO:0004124|GO:0006535
Blo09g00346 566 Gene3D - 140 273 IPR039261 -
Blo09g00346 566 Gene3D Translation factors 40 139 - -
Blo09g00346 566 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491
Blo09g00346 566 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 300 318 IPR001216 GO:0006535
Blo09g00346 566 PANTHER CYSTATHIONINE BETA-SYNTHASE 276 553 - -
Blo09g00346 566 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491
Blo09g00346 566 TIGRFAM cysKM: cysteine synthase 275 553 IPR005856 GO:0004124|GO:0006535
Blo09g00346 566 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 250 IPR039261 -
Blo09g00346 566 PANTHER S-SULFO-L-CYSTEINE SYNTHASE (O-ACETYL-L-SERINE-DEPENDENT), CHLOROPLASTIC 276 553 - -
Blo09g00346 566 Pfam Pyridoxal-phosphate dependent enzyme 276 549 IPR001926 -
Blo09g00346 566 Gene3D - 312 414 IPR036052 -
Blo09g00346 566 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 275 551 IPR036052 -
Blo09g00346 566 PRINTS Cytochrome B5 reductase signature 157 176 - -
Blo09g00346 566 PRINTS Cytochrome B5 reductase signature 76 87 - -
Blo09g00346 566 PRINTS Cytochrome B5 reductase signature 98 105 - -
Blo09g00346 566 PRINTS Cytochrome B5 reductase signature 134 148 - -
Blo09g00346 566 PRINTS Cytochrome B5 reductase signature 195 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo09g00346 K22846 CS26; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144] - tcc:18599769 470.314
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00150 Blo-Chr8:1577237 Blo09g00346 Blo-Chr9:13906357 2.43E-132 dispersed
Blo09g00346 Blo-Chr9:13906357 Blo18g00581 Blo-Chr18:8546534 2.87E-116 dispersed
Blo16g00782 Blo-Chr16:32633650 Blo09g00346 Blo-Chr9:13906357 3.35E-17 dispersed
Blo18g00197 Blo-Chr18:1927631 Blo09g00346 Blo-Chr9:13906357 1.47E-36 dispersed
Blo07g01200 Blo-Chr7:31870643 Blo09g00346 Blo-Chr9:13906357 6.68E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g63 . . . . . . . . . Cmo14g00480 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02154 . Blo09g00346 . . . . . . . . . . . . Car14g00437 . . . . . . . . . Cla10g01590 Cam10g1639 Cec10g1688 Cco10g1652 Clacu10g1654 Cmu10g2409 Cre10g1790 . Csa03g03662 Chy04g01701 .
Vvi13g922 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo09g00346 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo09g00007 . 31 164 NADPH P450 reductases AT5G53560 81.3 2.7e-61 231.5
Blo16g00687 . 1 134 NADPH P450 reductases AT5G53560 69.4 6.0e-53 203.8
Blo02g00229 . 16 121 NADPH P450 reductases AT5G53560 69.8 7.6e-40 160.2
Blo16g00687 . 1 134 NADPH P450 reductases AT5G48810 66.9 2.6e-51 198.4
Blo09g00007 . 31 164 NADPH P450 reductases AT5G48810 62.5 1.8e-47 185.7
Blo07g01073 . 1 138 NADPH P450 reductases AT5G48810 56.7 7.9e-40 160.2
Blo16g00687 . 22 133 NADPH P450 reductases AT2G32720 83.0 3.6e-50 194.5
Blo02g00229 . 16 120 NADPH P450 reductases AT2G32720 84.8 1.7e-47 185.7
Blo09g00007 . 52 163 NADPH P450 reductases AT2G32720 67.9 9.0e-41 163.3
Blo07g01200 . 399 723 NADPH P450 reductases AT5G17770 68.9 1.4e-123 439.5
Blo08g00150 . 8 278 NADPH P450 reductases AT5G17770 76.0 1.8e-120 429.1
Blo09g00346 . 2 251 NADPH P450 reductases AT5G17770 80.0 2.3e-115 412.1
Blo09g00007 . 31 164 NADPH P450 reductases AT5G53560 81.3 2.7e-61 231.5
Blo16g00687 . 1 134 NADPH P450 reductases AT5G53560 69.4 6.0e-53 203.8
Blo02g00229 . 16 121 NADPH P450 reductases AT5G53560 69.8 7.6e-40 160.2
Blo16g00687 . 1 134 NADPH P450 reductases AT5G48810 66.9 2.6e-51 198.4
Blo09g00007 . 31 164 NADPH P450 reductases AT5G48810 62.5 1.8e-47 185.7
Blo07g01073 . 1 138 NADPH P450 reductases AT5G48810 56.7 7.9e-40 160.2
Blo16g00687 . 22 133 NADPH P450 reductases AT2G32720 83.0 3.6e-50 194.5
Blo02g00229 . 16 120 NADPH P450 reductases AT2G32720 84.8 1.7e-47 185.7
Blo09g00007 . 52 163 NADPH P450 reductases AT2G32720 67.9 9.0e-41 163.3
Blo07g01200 . 399 723 NADPH P450 reductases AT5G17770 68.9 1.4e-123 439.5
Blo08g00150 . 8 278 NADPH P450 reductases AT5G17770 76.0 1.8e-120 429.1
Blo09g00346 . 2 251 NADPH P450 reductases AT5G17770 80.0 2.3e-115 412.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo09g00346 Blo_Chr09 FPKM 1.58642 1.852735 6.452219 8.027704 9.922569 9.959094 11.712037 6.947591 8.924138 9.880534